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Bill Denney


Posts: 32
Registered:
March 2006
Multiple kineticLaw Sections Per Reaction 09 Mar '06 10:14 Go to previous message

I'm wanting to put multiple kineticlaw sections in each reaction. The
reason that I want to do this is because I have kinetic data on both the
on and off rates of the reactions that I need to model as separate
reactions. I thought that it made sense that if I said that the reaction
was reversible then I could have both the forward and reverse kinetics
within that reaction.

Something similar to this seems to have been discussed before:
http://www.sbml.org/forums/index.php?t=tree&goto=2996&rid=0

Is there a better, more accepted way to do this?

Another issue that I've been thinking about is: what is the best way to
store multiple values for the same kinetic rate constants. The reason I
want to do this is that I have tables that list a set of kinetics for
reactions from several groups that may not agree. I would like to store
all these values within my sbml so that my tools can try to enumerate
which kinetics seem to be the most consistent. I could do this within an
annotation, but it seems as though it could be an issue that could more
generally useful to the sbml community.

Bill

--
Emily's Lullaby n. - A tranquilizer dart.
-- Will Miller

      

SubjectPosterDate
Read Message   Multiple kineticLaw Sections Per Reaction  Bill Denney09 Mar '06 10:14
Read Message   Re: Multiple kineticLaw Sections Per Reaction Hiroyuki Kuwahara09 Mar '06 16:18
Read Message   RE: Multiple kineticLaw Sections Per Reaction Herbert Sauro09 Mar '06 17:09
Read Message   RE: Multiple kineticLaw Sections Per Reaction Bill Denney09 Mar '06 18:30
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 01:01
Read Message   RE: Multiple kineticLaw Sections Per Reaction Bill Denney10 Mar '06 04:15
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 09:54
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 10:16
Read Message   Re: Multiple kineticLaw Sections Per Reaction Stefan Hoops10 Mar '06 10:28
Read Message   Re: Multiple kineticLaw Sections Per Reaction Mike Hucka10 Mar '06 11:24
Read Message   Re: Multiple kineticLaw Sections Per Reaction Tomas Radivoyevitch10 Mar '06 05:32
Read Message   Re: Multiple kineticLaw Sections Per Reaction Bill Denney10 Mar '06 10:32
Read Message   RE: Multiple kineticLaw Sections Per Reaction Mike Hucka10 Mar '06 11:02
Read Message   RE: Multiple kineticLaw Sections Per Reaction Herbert Sauro10 Mar '06 09:39
Read Message   RE: Multiple kineticLaw Sections Per Reaction Bill Denney10 Mar '06 10:36
Read Message   RE: Multiple kineticLaw Sections Per Reaction Mike Hucka10 Mar '06 11:10
Read Message   Re: Multiple kineticLaw Sections Per Reaction Mike Hucka10 Mar '06 11:07
Read Message   RE: Multiple kineticLaw Sections Per Reaction Herbert Sauro10 Mar '06 13:00
Read Message   RE: Multiple kineticLaw Sections Per Reaction Herbert Sauro10 Mar '06 13:03
Read Message   RE: Multiple kineticLaw Sections Per Reaction Darren J Wilkinson10 Mar '06 13:51
Read Message   Re: Multiple kineticLaw Sections Per Reaction Stefan Hoops10 Mar '06 15:04
Read Message   Re: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 16:21
Read Message   Re: Multiple kineticLaw Sections Per Reaction Stefan Hoops13 Mar '06 05:55
Read Message   Re: Multiple kineticLaw Sections Per Reaction Darren J Wilkinson13 Mar '06 12:09
Read Message   Re: Multiple kineticLaw Sections Per Reaction Stefan Hoops14 Mar '06 05:08
Read Message   Re: Multiple kineticLaw Sections Per Reaction Darren J Wilkinson14 Mar '06 11:21
Read Message   response to "fast" attribute action item... Schaff29 Mar '06 08:22
Read Message   response to "fast" attribute action item Schaff29 Mar '06 11:58
Read Message   RE: Multiple kineticLaw Sections Per Reaction Bill Denney10 Mar '06 14:28
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 15:10
Read Message   stochastic/ODE models Eric Mjolsness10 Mar '06 14:44
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 14:55
Read Message   RE: Multiple kineticLaw Sections Per Reaction Herbert Sauro10 Mar '06 18:01
Read Message   RE: Multiple kineticLaw Sections Per Reaction Mike Hucka11 Mar '06 00:41
Read Message   RE: Multiple kineticLaw Sections Per Reaction Darren J Wilkinson11 Mar '06 05:29
Read Message   RE: Multiple kineticLaw Sections Per Reaction Bill Denney11 Mar '06 05:37
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere11 Mar '06 15:23
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