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Mike Hucka


Posts: 961
Registered:
October 2003
Re: Multiple kineticLaw Sections Per Reaction 10 Mar '06 11:07 Go to previous messageGo to previous message

denney> I'm wanting to put multiple kineticlaw sections in
denney> each reaction. The reason that I want to do this
denney> is because I have kinetic data on both the on and
denney> off rates of the reactions that I need to model as
denney> separate reactions.

In SBML, they should be put as separate reactions. After
all, these are two reactions. It's just a question of
having one SBML reaction definition per reaction in a model.

denney> I thought that it made sense that if I said that
denney> the reaction was reversible then I could have both
denney> the forward and reverse kinetics within that
denney> reaction.

As SBML stands currently, you have to bring down the
granularity lower, and separate the reactions.

MH

      

SubjectPosterDate
Read Message   Multiple kineticLaw Sections Per Reaction Bill Denney09 Mar '06 10:14
Read Message   Re: Multiple kineticLaw Sections Per Reaction Hiroyuki Kuwahara09 Mar '06 16:18
Read Message   RE: Multiple kineticLaw Sections Per Reaction Herbert Sauro09 Mar '06 17:09
Read Message   RE: Multiple kineticLaw Sections Per Reaction Bill Denney09 Mar '06 18:30
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 01:01
Read Message   RE: Multiple kineticLaw Sections Per Reaction Bill Denney10 Mar '06 04:15
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 09:54
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 10:16
Read Message   Re: Multiple kineticLaw Sections Per Reaction Stefan Hoops10 Mar '06 10:28
Read Message   Re: Multiple kineticLaw Sections Per Reaction Mike Hucka10 Mar '06 11:24
Read Message   Re: Multiple kineticLaw Sections Per Reaction Tomas Radivoyevitch10 Mar '06 05:32
Read Message   Re: Multiple kineticLaw Sections Per Reaction Bill Denney10 Mar '06 10:32
Read Message   RE: Multiple kineticLaw Sections Per Reaction Mike Hucka10 Mar '06 11:02
Read Message   RE: Multiple kineticLaw Sections Per Reaction Herbert Sauro10 Mar '06 09:39
Read Message   RE: Multiple kineticLaw Sections Per Reaction Bill Denney10 Mar '06 10:36
Read Message   RE: Multiple kineticLaw Sections Per Reaction Mike Hucka10 Mar '06 11:10
Read Message   Re: Multiple kineticLaw Sections Per Reaction  Mike Hucka10 Mar '06 11:07
Read Message   RE: Multiple kineticLaw Sections Per Reaction Herbert Sauro10 Mar '06 13:00
Read Message   RE: Multiple kineticLaw Sections Per Reaction Herbert Sauro10 Mar '06 13:03
Read Message   RE: Multiple kineticLaw Sections Per Reaction Darren J Wilkinson10 Mar '06 13:51
Read Message   Re: Multiple kineticLaw Sections Per Reaction Stefan Hoops10 Mar '06 15:04
Read Message   Re: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 16:21
Read Message   Re: Multiple kineticLaw Sections Per Reaction Stefan Hoops13 Mar '06 05:55
Read Message   Re: Multiple kineticLaw Sections Per Reaction Darren J Wilkinson13 Mar '06 12:09
Read Message   Re: Multiple kineticLaw Sections Per Reaction Stefan Hoops14 Mar '06 05:08
Read Message   Re: Multiple kineticLaw Sections Per Reaction Darren J Wilkinson14 Mar '06 11:21
Read Message   response to "fast" attribute action item... Schaff29 Mar '06 08:22
Read Message   response to "fast" attribute action item Schaff29 Mar '06 11:58
Read Message   RE: Multiple kineticLaw Sections Per Reaction Bill Denney10 Mar '06 14:28
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 15:10
Read Message   stochastic/ODE models Eric Mjolsness10 Mar '06 14:44
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere10 Mar '06 14:55
Read Message   RE: Multiple kineticLaw Sections Per Reaction Herbert Sauro10 Mar '06 18:01
Read Message   RE: Multiple kineticLaw Sections Per Reaction Mike Hucka11 Mar '06 00:41
Read Message   RE: Multiple kineticLaw Sections Per Reaction Darren J Wilkinson11 Mar '06 05:29
Read Message   RE: Multiple kineticLaw Sections Per Reaction Bill Denney11 Mar '06 05:37
Read Message   RE: Multiple kineticLaw Sections Per Reaction Nicolas Le Novere11 Mar '06 15:23
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