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This is really cool Bill!

But what about all the work you did on the octave binding :-)

Sarah


----- Original Message -----
From: "Bill Denney" <denney@seas.upenn.edu>
To: <libsbml-discuss@caltech.edu>
Sent: Saturday, August 19, 2006 12:54 AM
Subject: [libsbml-discuss] Using Matlab Bindings with Octave


> Octave recently added support for mex files, and because of that support,
> I decided to test out the CVS libsbml with the current version of Octave
> (2.9.7, http://www.octave.org/). Everything works fine. I don't know how
> to setup autconf for this, but if you do the following the binding build
> will work:
>
> * Make an executable file in your path called mex that is:
>
> mkoctfile --mex $*
>
> * Put any executable file in the path with the name matlab (autoconf
> checks for matlab, probably to do tests).
>
> If you want to run the tests, you can change to the
> src/bindings/matlab/test directory and run
>
> octave --path .. --eval testBinding
>
> which will result in:
>
> GNU Octave, version 2.9.7 (i486-pc-linux-gnu).
> Copyright (C) 2006 John W. Eaton.
> This is free software; see the source code for copying conditions.
> There is ABSOLUTELY NO WARRANTY; not even for MERCHANTIBILITY or
> FITNESS FOR A PARTICULAR PURPOSE. For details, type `warranty'.
>
> Additional information about Octave is available at http://www.octave.org.
>
> Please contribute if you find this software useful.
> For more information, visit http://www.octave.org/help-wanted.html
>
> Report bugs to <bug@octave.org> (but first, please read
> http://www.octave.org/bugs.html to learn how to write a helpful report).
>
> Testing readFromFile1:
> Number tests: 69
> Number fails: 0
> Pass rate: 100%
>
> Testing readFromFile2:
> Number tests: 81
> Number fails: 0
> Pass rate: 100%
>
> Testing readFromFile3:
> Number tests: 73
> Number fails: 0
> Pass rate: 100%
>
> Testing readFromFile4:
> Number tests: 21
> Number fails: 0
> Pass rate: 100%
>
> Testing readFromFile5:
> Number tests: 64
> Number fails: 0
> Pass rate: 100%
>
> Testing readFromFile6:
> Number tests: 25
> Number fails: 0
> Pass rate: 100%
>
> Testing readFromFile7:
> Number tests: 33
> Number fails: 0
> Pass rate: 100%
>
> Overall tests:
> Number tests: 7
> Number fails: 0
> Pass rate: 100%
>
> Matlab binding successfull
>
> There was one problem that I had, readFromFile6.m had a capitalization
> issue (it will cause problems on any case-sensitive platform) that can be
> fixed with the patch below (or renaming cSymbolTime-reaction-l2.xml to
> csymbolTime-reaction-l2.xml).
>
> Have a good day,
>
> Bill
>
> cvs diff: Diffing .
> Index: testReadFromFile6.m
> ===================================================================
> RCS file:
> /cvsroot/sbml/libsbml/src/bindings/matlab/test/testReadFromFile6.m,v
> retrieving revision 1.1
> diff -u -r1.1 testReadFromFile6.m
> --- testReadFromFile6.m 2 Dec 2005 10:56:11 -0000 1.1
> +++ testReadFromFile6.m 18 Aug 2006 23:49:34 -0000
> @@ -1,6 +1,6 @@
> function y = testReadFromFile6
>
> -filename = fullfile(pwd,'test-data', 'cSymbolTime-reaction-l2.xml');
> +filename = fullfile(pwd,'test-data', 'csymbolTime-reaction-l2.xml');
>
> m = TranslateSBML(filename);
>
> @@ -105,4 +105,4 @@
> else
> y = 0;
> end;
> -
> \ No newline at end of file
> +
> cvs diff: Diffing test-data
>
>
>