Forums

Dear Tommaso,

In the SBML file, would-you have an element functionDefinition with an
id="function_0"?

> Hi community,
> I need of a clarification.
>
> I don't understand the meaning of the following chunk of code.
>
> <kineticLaw>
> <math xmlns="http://www.w3.org/1998/Math/MathML">
> <apply>
> <times />
> <ci>compartment_0</ci>
> <apply>
> <ci>function_0</ci>
> <ci>KCAT</ci>
> <ci>species_0</ci>
> <ci>species_1</ci>
> <ci>Km</ci>
> </apply>
> </apply>
> </math>
> <listOfParameters>
> <parameter id="KCAT" value="3.51" />
> <parameter id="Km" value="289000" />
> </listOfParameters>
> </kineticLaw>
>
> In particular, how can I translate the MathML expression in string?
>
> '(SIZE_OF(compartment_0)*(YYY))'
>
> What in place of "YYY"?
> How to correlate the <ci> elements inside the most internal <apply>?
>
> Many Thanks
> Tommaso
>
> ____________________________________________________________
> To manage your sbml-discuss list subscription, visit
> https://utils.its.caltech.edu/mailman/listinfo/sbml-discuss
>
> For a web interface to the sbml-discuss mailing list, visit
> http://sbml.org/forums/
>
> For questions or feedback about the sbml-discuss list,
> contact sbml-team@caltech.edu.
>


--
Nicolas LE NOVERE, Computational Neurobiology,
EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Tel: +44(0)1223494521, Fax: +44(0)1223494468, Mob: +44(0)7833147074
http://www.ebi.ac.uk/~lenov, AIM:nlenovere, MSN:nlenovere@hotmail.com

____________________________________________________________
To manage your sbml-discuss list subscription, visit
https://utils.its.caltech.edu/mailman/listinfo/sbml-discuss

For a web interface to the sbml-discuss mailing list, visit
http://sbml.org/forums/

For questions or feedback about the sbml-discuss list,
contact sbml-team@caltech.edu.