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AuthorTopic
Stefan.Hoops


Posts: 170
Registered:
December 2006
Re: Handwritten sbml model. Please look. 07 Mar '07 07:40 Go to previous messageGo to previous message

Hello Delboy,

On Tue, 06 Mar 2007 06:02:21 -0800 (PST)
Delboy <uanman@hotmail.com> wrote:

>
> Hi thanks for the replys everyone.
>
> Hello shoops. That method of removing the reactions all together is
> very interesting, can most models be represented in alternate forms
> like that?

If you are interested in non structured deterministic modelling like
integration or steady state analysis it always suffices to present the
model as ODEs. In your example that is probably your intend, however in
most cases in systems biology it is advantages to look at a reaction
network and let the software tool do the required interpretation.

I created the SBML models with the help of COPASI (www.copasi.org) and
some minor editing. For a complete list of SBML supporting tools
please have a look at www.sbml.org

Thanks,
Stefan


--
Stefan Hoops, Ph.D.
Senior Project Associate
Virginia Bioinformatics Institute - 0477
Virginia Tech
Bioinformatics Facility I
Blacksburg, Va 24061, USA

Phone: (540) 231-1799
Fax: (540) 231-2606
Email: shoops@vbi.vt.edu
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SubjectPosterDate
Read Message   Handwritten sbml model. Please look. Delboy05 Mar '07 04:24
Read Message   Re: Handwritten sbml model. Please look. Herbert Sauro05 Mar '07 11:52
Read Message   Re: Handwritten sbml model. Please look. Frank Bergmann05 Mar '07 12:38
Read Message   Re: Handwritten sbml model. Please look. Stefan.Hoops05 Mar '07 18:22
Read Message   Re: Handwritten sbml model. Please look. Delboy06 Mar '07 02:05
Read Message   Re: Handwritten sbml model. Please look. Rainer Machne07 Mar '07 07:39
Read Message   Re: Handwritten sbml model. Please look.  Stefan.Hoops07 Mar '07 07:40
Read Message   Re: Handwritten sbml model. Please look. Delboy09 Mar '07 02:21
Read Message   Re: Handwritten sbml model. Please look. Herbert Sauro10 Mar '07 16:54
Read Message   Re: Handwritten sbml model. Please look. Delboy15 Mar '07 03:24
Read Message   Re: Handwritten sbml model. Please look. Stefan.Hoops15 Mar '07 05:06
Read Message   Re: Handwritten sbml model. Please look. Sarah Keating15 Mar '07 07:45
Read Message   Re: Handwritten sbml model. Please look. Delboy16 Mar '07 05:38
Read Message   Re: Handwritten sbml model. Please look. Delboy19 Mar '07 10:45
Read Message   Re: Handwritten sbml model. Please look. Stefan.Hoops19 Mar '07 12:18
Read Message   Re: Handwritten sbml model. Please look. Delboy20 Mar '07 02:26
Read Message   Re: Handwritten sbml model. Please look. Stefan.Hoops21 Mar '07 08:38
Read Message   Re: Handwritten sbml model. Please look. Delboy26 Mar '07 01:40
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