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Use something simpler like the systems biology workbench. I've tried the sbtoolbox and encountered similar requirements for installations.

Download sbw from www.sys-bio.org, install with one click. Build your model either by drawing a simple diagram of it and exporting the sbml or write a simple script to describe it, if you need advise on this email me directly.

Herbert Sauro

-- Original Message-----
From: sbml-discuss-bounces@caltech.edu on behalf of Delboy
Sent: Sat 3/10/2007 10:36 AM
To: sbml-discuss@caltech.edu
Cc:
Subject: Re: [sbml-discuss] Handwritten sbml model. Please look.


Hi, i attempted to use Dr. Henning Schmidts sbtoolbox with matlab but encountered a few errors when trying to install.

When trying to install the SBMlTOOLBOX I got the message:

'SBMLToolbox requires the libsbml library files to be on the PATH. Setup can copy these to the system directory C:\WINDOWS\System32'

I clicked yes to perform this but it failed because im using a computer connected to a university network and the access to the C:\ was denied. I think this may be what caused my later problmes. I can maybe try it on my home computer if i can get a copy of matlab.

Anyway i tried it again and chose not to install the library files and just ignored any error messages which popped up. When i installed SBTOOLBOX and attempted to change the PATH information in installSB.m to the directory in which i'd installed SBMLTOOLBOX (H:\SBMLTOOLBOX) and typed installSB into Matlab i got the error - access denied. Again i believe this to be due to the fatc i'm using a network computer.

I also recieved an error converning this piece of code in the installSB.m file:

% add SBML export jars to javaclasspath (static if windows, dynamic if unix)
if isunix,
addJars2DynamicCP
else
addJars2StaticCP <-----this line
end


so i edited it out and that seems to stop the error. :).

However when i went to try and export a SB model to SBML, i got an error telling me:

??? Undefined command/function 'SBexportSBML'

I then read through the tutorial and under the section for exporting it said this functionality had been removed?

I was just wondering if anyone knows a bit more about using this system than i do and could possibily give any tips or information to help me along?

Thanks.

EC
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