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This page is an archive of news announcements about SBML, the SBML Project, and the SBML.org site. For news about SBML-relevant activites from the broader user community, please see the SBML Community news page.


MOCCASIN 1.1.2 released

(1 Sep.'17) The new release of MOCCASIN fixes a conversion failure problem.

libSBML 5.15.0 released

(6 Apr.'17) Adds support for SBML Level 3 'multi', new functions to parse math formulas, & other features.

SBML Level 3 'multi'

(21 Mar.'17) The specification for rule-based models in SBML Level 3 has been finalized.

SBML L3V1 Release 2

(2 Jan.'17) The Release 2 of the SBML Level 3 Version 1 specification is now available.

JSBML 1.2

(14 Dec.'16) The new release of JSBML is now available.

Test Suite 3.3.0 alpha

(17 Oct.'16) An alpha 3.3.0 release of the test cases archives for the SBML Test Suite is now available.

libSBML 5.14.0 experimental

(16 Sep.'16) Supports the RC releases of SBML L3V1 R2 and L3V2 R1, plus adds other features & fixes bugs.

libCombine

(16 Sep.'16) A new API library for the COMBINE .omex file format is available.

SBML Level 3 Version 2 draft

(16 Jul.'16) Now available: draft specifications of SBML Level 3 Version 2 and Level 3 Version 1 Release 2 .

SBML Test Suite test cases 3.2.0

(29 Jul.'16) The new relesae of the SBML Test Suite test cases includes the DSMTS, and new syntactic cases.

GSOC students passed midterms

(7 Jul.'16) All 5 SBML-related Google Summer of Code students passed their midterm evaluations.

Online validator updated

(24 May'16) The Online SBML Validator now supports draft Level 3 packages. It is also faster.

libSBML 5.13.0 released

(14 Apr.'16) Adds support for SBML Level 3 Groups, fixes bugs, and more.

SBML Level 3 Groups

(5 Apr.'16) Version 1 of the SBML Level 3 package for Groups has been ratified!

SBML FBC Version 2

(21 Sep.'15) Version 2 of the SBML Level 3 package for Flux Balance Constraints has been ratified!

JSBML 1.1 released

(12 Nov.'15) The new update features many improvements, updates and fixes.

libSBML 5.12.0

(12 Nov.'15) Adds FBC version 2 support, plus bug fixes and more.

JSBML 1.1 beta 1

(15 Oct.'15) The new update features many improvements, updates and fixes.

Site outage Sep. 28

(24 Sep.'15) All of SBML.org and related services will be off-line on Monday Sep. 28.

SBML specifications in JIB

(3 Sep.'15) The Journal of Integrative Bioinformatics published a special issue on standards in systems biology.

SBML Level 2 Version 5

(4 Aug.'15) A new version of SBML Level 2 is now available.

libSBML 5.11.6 exp.

(16 Jul.'15) New release!

libSBML short survey

(16 Jun.'15) Please fill out this short survey about libSBML's language interfaces.

Site outage June 19.

(8 Jun.'15) SBML.org and related services will be unavailable from 16:00–19:00 PST on June 19.

libSBML 5.11.4 exp.

(9 Apr.'15) Offers bindings for PHP, better installation for MATLAB, updates some L3 packages, and more.

libSBML 5.11.2 exp.

(16 Jan.'15) The new release of libSBML supports SBML Level 2 Version 5 RC1, plus offers several bug fixes.

SBML Editor elections

(23 Dec.'14) Elections for a new SBML Editor are ongoing—deadline is Dec. 28.

JSBML 1.0

(11 Dec.'14) The final 1.0 release of JSBML is now available.

SBML L2v5 RC1

(28 Nov.'14) Release candidate 1 of the Level 2 Version 5 specification is now available.

SBML FBC v.2 RC1

(28 Nov.'14) Release candidate 1 of Version 2 of the SBML Flux Balance Constraints specification is now available.

libSBML 5.11 released!

(27 Nov.'14) The new version adds JavaScript support + new features + bug fixes.

Call for SBML Editor nominations

(26 Nov.'14) The nomination phase for a new SBML Editor is now open.

Test suite case update

(22 Oct.'14) A new archive of the SBML Test Suite test cases contains minor updates to two cases.

Tutorials at ICSB 2014

(8 Sep.'14) The SBML Team will participate in the ERASYSAPP & COMBINE tutorials at ICSB 2014.

libSBML 5.10.2 released!

(17 Jul.'14) The new version fixes many bugs and updates SBML L3 package support.

COMBINE 2014

(27 Apr.'14) Registration for the August event in Los Angeles is now open.

libSBML 5.10.0

(10 Apr.'14) The new version of libSBML improves math handling, L3 packages, and more.

JSBML in Google Summer of Code

(7 Mar.'14) The JSBML project is participating in Google Summer of Code this year.

JSBML 1.0 beta 1

(7 Mar.'14) The pure Java JSBML library adds Level 3 package support, fixes and new features.

SBML Test Suite 3.1.1

(6 Mar.'14) This latest release cases fixes a problem with network updates of test cases.

SBML Test Suite tests update

(26 Feb.'14) The latest release of the test cases fixes issues with the SED-ML files provided.

Lists moved to Google Groups

(21 Feb.'14) The main SBML mailing lists have been converted to Google Groups.

libSBML 5.9.2-experimental

(30 Jan.'14) Experimental release 5.9.2 of libSBML is now available.

New SBML Editors

(20 Jan.'14) Brett Olivier and Dagmar Waltemath have been elected SBML Editors for 2014–2016.

HARMONY 2014

(16 Jan.'14) Registration is open for the next HARMONY, to be held April 22-25, 2014, in Manchester, UK.

SBML Test Suite 3.1.0

(11 Dec.'13) A new version of the SBML Test Suite is now available.

Call for SBML Editor nominations

(15 Nov.'13) The nomination phase for two new SBML Editors is now open.

libSBML 5.9 released

(14 Nov.'13) Now bundles the SBML Level 3 Qualitative Models package, plus has many fixes and improvements.

SBML 'comp' Release 3

(14 Nov.'13) Release 3 of the specification for SBML Level 3 Hierarchical Model Composition is now available.

COMBINE 2013

(28 Jul.'13) Registration and a preliminary agenda for the September event are now available.

SBML Test Runner 3.0

(6 Jun.'13) A new version of the standalone Test Runner for the SBML Test Suite is now available.

Site outage June 8

(2 Jun.'13) SBML.org and biomodels.caltech.edu will be off-line due to a power interruption on June 8.

SBML Test Suite cases archive

(17 May '13) An updated set of test cases for the SBML Test Suite is now available.

SBML Qualitative Models spec. released

(17 May '13) The specification for Version 1 of the SBML Level 3 Qualitative Models package is available.

Rel. 2 of SBML Level 3 'comp'

(1 Mar.'13) Release 2 of the specification for SBML Level 3 Hierarchical Model Composition is now available.

LibSBML 5.8.0 released!

(28 Feb.'13) Supports the latest Level 3 fbc specification and includes bug fixes and documentation updates.

HARMONY 2013

(18 Feb.'13) Registration is open for the next HARMONY, to be held May 20-23, 2013, in Connecticut, USA.

SBML Level 3 'fbc'

(14 Feb.'12) Version 1 of the final Level 3 specification for Flux Balance Constraints has been released!

Pubs. that accept SBML

(13 Feb.'13) We have updated the list of publications that are known to support submissions in SBML format.

SBML Test Suite cases updated

(18 Jan.'13) The 2.3 release adds test cases for the SBML Level 3 packages 'comp' and 'fbc'.

SBML Test Suite Database

(16 Jan.'13) The database of public SBML Test Suite results is now open!

libSBML 5.7.0 released!

(14 Jan.'13) Supports the latest Level 3 comp specification, updates other Level 3 package plug-ins, and fixes bugs.

SBML Test Suite updated

(1 Jan.'13) The 2.2 release brings much-improved plots and a few other changes.

SBML Editor elections

(13 Dec.'12) Elections for 2 new SBML Editors for 2013–2015 have begun.

Call for SBML Editor nominations

(20 Nov.'12) The nomination phase for two new SBML Editors is now open.

HARMONY 2013 dates set!

(17 Nov.'12) The next Hackathon on Resources for Modeling in Biology will be held May 20-23, 2013, in Connecticut, USA.

SBML Test Suite updated

(10 Aug.'12) Changes are limited to fixes to documentation errors.

SBML Level 3 'comp'

(9 Oct.'12) The Level 3 specification for Hierarchical Model Composition has entered Release Candidate stage.

SBMLeditor 2.0b1 released

(14 Sep.'12) SBMLeditor, the simple low-level editor for SBML, now supports SBML Level 3 Version 1 Core.

JSBML 0.8 released!

(25 Aug.'12) JSBML 0.8, the pure Java SBML API library, provides new features and many bug fixes.

SBML Test Suite updated

(14 Aug.'12) Changes include new test cases, some tag updates and case corrections, and an updated online interface.

libSBML 5.6.0 released!

(3 Aug.'12) libSBML 5.6.0 adds an R interface, improved Python interface, bug fixes, and more.

COMBINE 2012

(29 Jun.'12) Registration is now open for COMBINE 2012, being held in Toronto, CA, on Aug. 15–19.

libSBML 5.5.0 released!

(12 May.'12) libSBML 5.5.0 fixes an annotation-handling bug and adds new features, including a new math parser.

Order your t-shirts!

(11 Apr.'12) The ordering system for the SBML t-shirts is now open, in time for HARMONY 2012!

libSBML survey

(30 Mar.'12) We need libSBML user's feedback about a new infix formula to MathML parser.

Vote for a t-shirt design!

(16 Mar.'12) Voting is now open for an SBML t-shirt design in time for HARMONY 2012.

libSBML 5.4.1 released!

(24 Feb.'12) libSBML 5.4.1 fixes a few issues discovered in 5.4.0.

libSBML 5.4.1 released!

(24 Feb.'12) libSBML 5.4.1 fixes a few issues discovered in 5.4.0.

libSBML 5.4.0 released!

(15 Feb.'12) libSBML 5.4 fixes some annotation handling and SBML conversion bugs, and adds APIs and docs.

SBMLToolbox 4.1.0

(21 Jan.'12) The latest SBMLToolbox supports the 'fbc' flux balance constraints package for SBML Level 3.

libSBML 5.3.0 released!

(23 Dec.'11) The latest libSBML release adds new features and fixes more bugs.

JSBML 0.8rc1 released

(15 Dec.'11) JSBML is a pure Java library for SBML with an API similar to libSBML's. Release 0.8rc1 is now available.

COMBINE 2012 survey

(22 Nov.'11) We are running a survey to set the dates of COMBINE 2012 in Toronto, Canada.

libSBML 5.2.0 released!

(12 Nov.'11) The latest libSBML release adds new features and fixes more bugs.

Call for SBML Editor nominations

(10 Nov.'11) The nomination phase for one new SBML Editors is now open.

HARMONY 2012 set!

(9 Nov.'11) The next Hackathon on Resources for Modeling in Biology will be held May 21-25, 2012, in Maastricht, NL.

libSBML 5.1.0 beta

(25 Aug.'11) The first beta release of libSBML 5.1.0 is now available.

SBMLToolbox 4.0 released

(19 Jul.'11) The updated SBMLToolbox 4.0 for MATLAB adds fixes and new features (incl. SBML L3v1 Core support).

COMBINE 2011

(14 Jun.'11) Registration is now open for COMBINE 2011, being held in Heidelberg, DE, on Sep. 3–7.

SBML Test Suite updated

(6 Jun.'11) Changes include addition of SBML L3v1 Core test cases, SED-ML files, and updates to the online interface.

libSBML 5.0.0 released!

(13 Apr.'11) The first full release of the package-aware libSBML 5 series.

libSBML 4.3.1 released!

(29 Mar.'11) A minor update to eradicate a few bugs and compatibility issues.

COMBINE 2011 set!

(29 Mar.'11) This year's COMBINE meeting will be held in Heidelberg, Germany, Sep 3–7.

libSBML 4.3.0 released!

(7 Mar.'11) Featuring bug fixes, improvements in behavior, and new standalone Windows binaries for MATLAB and Python.

MathSBML 2.8.0 released

(23 Feb.'11) MathSBML is a Mathematical package for working with SBML. The new version supports Mathematica 8.0.

JSBML 0.8b1 released

(5 Feb.'11) JSBML is a pure Java library for SBML with an API similar to libSBML's. A beta version is now available.

HARMONY 2011

(20 Jan.'11) This year's SBML Hackathon will be held during April 18–22 as part of HARMONY 2011.

New SBML Editors elected

(4 Jan.'11) The votes are in: Sarah Keating and Chris Myers will be new SBML Editors in 2011!

200 tools!

(9 Oct.'10) The count of known SBML-compatible software packages now exceeds 200.

libSBML 4.2.0 released!

(6 Oct.'10) This has additions for the final release of Level 3 Version 1 Core, and bug fixes.

Final Level 3 Version 1 Core specification!

(6 Oct.'10) The final SBML Level 3 Version 1 Core specification is now available.

SBML 10th Anniversary

(1 Oct.'10) On Oct. 9, there will be a mini-symposium to mark the 10th anniversary of SBML. Join us right before ICSB in Edinburgh!

L3V1 errata list updated

(19 Sep.'10) The list of known issues in the SBML Level 3 Version 1 Core candidate specification has been updated.

libSBML 4.1.0 released!

(25 Aug.'10) This major update to libSBML supports SBML Level 3 Version 1 Core, fixes several bugs, and adds new facilities.

COMBINE 2010

(10 Aug.'10) The next SBML Forum Meeting will be integrated into COMBINE 2010, being held in Edinburgh, UK, on Oct. 6–9.

SBMLToolbox 3.1.2!

(27 Apr.'10) Another minor bug-fix release of our free MATLAB toolbox for SBML is now available.

SBMLToolbox 3.1.1!

(12 Apr.'10) A minor bug-fix release of our free MATLAB toolbox for SBML is now available.

Contest winner!

(7 Mar.'10) We have a winner for the SBML L3 Core specification bug-finding contest!

New libSBML matrix

(2 Feb.'10) We've added a page summarizing the differences between the different libSBML branches.

SBMLToolbox 3.1.0 released!

(28 Jan.'10) The new SBMLToolbox, a free MATLAB toolbox, adds features, support SBML L2v4 and fixes bugs.

SBML-BioModels.net Hackathon

(25 Jan.'10) The next Hackathon will be held May 1–4 in Seattle. Please let us know if you're coming.

LibSBML 4.0.1 released!

(21 Jan.'10) This release of the libSBML version 4.0.x series fixes many reported small bugs in 4.0.0.

LibSBML 5 preview!

(18 Jan.'10) A preview version of libSBML version 5, with a plug-in architecture for Level 3 packages, is now available.

Specification contest

(15 Jan.'10) Report bugs in the SBML L3v1C spec. and you may win a $100 gift certificate for Amazon.

New "elaborations" page

(12 Jan.'10) We've started a page for longer "elaborations" of some frequently-asked topics.

SBML Level 3 Version 1 Core released!

(31 Dec.'09) Release 1 Candidate of the SBML Level 3 Version 1 Core specification is now available.

SBML tools list reaches 180!

(23 Dec.'09) The number of tools listed in the SBML Software Guide has reached 180!

New SBML Editors elected

(21 Dec.'09) The votes are in: Jim Schaff and Lucian Smith will be new SBML Editors in 2010!

LibSBML survey results

(7 Dec.'09) The results of the survey about the Windows installers for libSBML are in, and we have a contest winner!

LibSBML Windows survey

(25 Nov.'09) We are running a survey to determine what people want in their Windows installers for libSBML.

SBMLeditor 1.3.4 released

(20 Nov.'09) SBMLeditor is a portable (written in Java), simple, low-level SBML editor. This release supports SBML L2v4 and the latest libSBML.

Review SBML on SourceForge!

(12 Nov.'09) SourceForge.net has a review system for projects. Please use it to vote & comment on the SBML project!

Call for SBML Editor nominations

(10 Nov.'09) The nomination phase for two new SBML Editors is now open.

LibSBML 4.0.0 released!

(26 Aug.'09) LibSBML is an API library for SBML. This release focuses on reducing opportunities for creating invalid SBML.

Draft of Level 3 Core!

(22 Aug.'09) A draft specification of SBML Level 3 Core is now available for public review.

LibSBML 3.4.1 released!

(30 Jul.'09) LibSBML is an API library for SBML. This release contains several small bug fixes.

More errata for L2v4r1

(11 July '09) A few more issues have been noted recently on the SBML Level 2 Version 4 errata list.

SBML Level 3 plans updated

(8 Jul. '09) The SBML Editors have updated the plans for SBML Level 3 Core and are seeking feedback.

SBML FAQ updated

(1 Jul. '09) FAQ item #3.6 now features an expanded explanation of SBML Level 2 annotations.

5000 visits/month

(26 Jun. '09) Our Google Analytics tracker reports sbml.org gets nearly 5000 visitors/month, 50% of them new.

SBML group on LinkedIn

(25 Jun. '09) There is now a group for SBML on LinkedIn.com, for all you LinkedIn members.

SBML tools list reaches 170

(22 Jun. '09) The number of tools listed in the SBML Software Guide has reached 170!

LibSBML 3.4.0 released!

(15 Jun.'09) LibSBML is an API library for SBML. The new release features new object constructors.

SBML FAQ updated

(9 Jun. '09) We've added a new item, #4.20, to the SBML FAQ.

2009 SBML Forum Meeting

(17 May '09) The next SBML Forum Meeting will be held in Stanford, California, USA, Sep. 3–4, as a satellite workshop of ICSB 2009.

Survey deadline extended

(16 May '09) We're conducting a survey to assess development goals for libSBML. Please tell us your thoughts!

LibSBML survey

(12 May '09) We're conducting a survey to assess development goals for libSBML. Please tell us your thoughts!

Errata for L2v4r1

(11 May '09) A few issues have been noted recently on the SBML Level 2 Version 4 errata list.

SBML on Twitter

(9 May '09) SBML has a news feed on Twitter @sbmlnews.

SBML tools list reaches 160

(27 Apr. '09) The number of tools listed in the SBML Software Guide has reached 160!

LibSBML 4.0.0 beta!

(17 Mar.'09) LibSBML is an API library for SBML. Version 4.0.0's API changes make it harder to create invalid SBML.

LibSBML 3.3.2 released!

(3 Mar.'09) LibSBML is an API library for SBML. The new release fixes bugs and a memory leak in 3.3.1.

LibSBML 3.3.1 released!

(3 Feb.'09) LibSBML is an API library for SBML. The new release fixes a few bugs in 3.3.0, including a potential crasher.

LibSBML 3.3.0 released!

(21 Jan.'09) LibSBML is an API library for working with SBML. New features include support for SBML Level 2 Version 4.

SBML report generator available

(20 Jan. '09) SBML.org now partners with the developers of SBML2LaTeX to provide an online service for generating human-readable reports of SBML files.

SBML Level 2 Version 4!

(22 Dec. '08) Release 1 of the SBML Level 2 Version 4 specification is now available. It corrects a few issues in L2V3 and acts on decisions made by the SBML community.

New SBML Editor elected

(19 Dec.'08) The votes are in, and Frank Bergmann will be an SBML Editor starting in 2009. Congrats, Frank!

SBML Hackathon 2009

(13 Dec.'08) The next SBML Hackathon will be held March 26–28, 2009, at the EBI in Hinxton, UK.

LibSBML 3.2.0 released!

(20 Aug.'08) LibSBML is an API library for working with SBML. New features include C# bindings and compressed file support.

KEGG2SBML 1.5.0 released!

(28 Jul. '08) KEGG2SBML converts KEGG pathway database files to SBML.

SBML logo available

(15 Jul. '08) An official logo for showing support of SBML is now available for public use.

2008 SBML Forum Meeting

(27 Jun. '08) The next SBML Forum Meeting will be held in Gothenburg, Sweden, August 27–28, as a satellite workshop of ICSB 2008.

Repository converted to SVN

(26 Jun '08) The SBML project source code repository now uses SVN instead of CVS for version control.

SBML.org problems

(29 May '08) A security break-in on the server, followed by a disk failure, caused SBML.org to be off-line for two days while we rebuilt it.

New SBML FAQ

(7 May '08) A greatly revised and rewritten list of FAQs and answers for SBML is now available.

New mailing list introduced

(6 May '08) A new mailing list, libsbml-development, now exists for discussions of libSBML improvement and development.

libsbml-discuss renamed

(6 May '08) The libsbml-discuss mailing list has been renamed to sbml-interoperability.

Old sbml.org failed

(2 Mar.'08) The old sbml.org server failed, so we had to unveil this new site even though some areas are unfinished.

LibSBML 3.1.1 released!

(25 Feb.'26) The latest version of LibSBML, an embeddable, portable API library for working with SBML content, is now available.

SBML Hackathon 2008

(19 Feb.'08) This year's SBML Hackathon will be April (6)–7–8 at Stellenbosh University.

SBMLToolbox 3.0.0 released!

(8 Jan.'26) The latest version of SBMLToolbox, a package for working with SBML models in MATLAB, is now available.

LibSBML 3.1.0 released!

(8 Jan.'26) The latest version of LibSBML, an embeddable, portable API library for working with SBML content, is now available.

New SBML Editors elected

(8 Jan.'08) The results are in, and our two new SBML Editors for 2008-2010 are Sven Sahle and Darren Wilkinson. Three cheers for them!

Dates of next SBML Hackathon

(7 Jan.'08) The results of the recent survey are in, and the dates of the 2008 SBML Hackathon will be April 7–8, with an optional third day on April 6, in Stellenbosh, South Africa.

New website in development

(30 Dec. '07) You're reading this on a completely new site and server for SBML.org. It's still in development but hopefully the site will be ready for public use very soon.

libSBML 3.0.3 released!

(17 Dec. '07) LibSBML 3.0.3 is now available. LibSBML is an embeddable, portable API library for reading, writing and manipulating files and data streams containing SBML content.

MathSBML 2.7.1 released!

(7 Dec. '07) MathSBML 2.7.1 is now available. MathSBML is an open-source package for working with SBML models in Mathematica.

libSBML 3.0.2 released!

(28 Nov. '07) LibSBML 3.0.2 is now available. LibSBML is an embeddable, portable API library for reading, writing and manipulating files and data streams containing SBML content.

libSBML 3.0.1 released!

(19 Oct. '07) LibSBML 3.0.1 is now available. LibSBML is an embeddable, portable API library for reading, writing and manipulating files and data streams containing SBML content.

SBML Level 2 Version 3 Release 2!

(27 Sep. '07) Release 2 of the SBML Level 2 Version 3 specification is now available. It corrects typos and small errors in Release 2.

libSBML 3.0.0 released!

(31 Aug. '07) LibSBML 3.0.0 is now available. LibSBML is an embeddable, portable API library for reading, writing and manipulating files and data streams containing SBML content.

2007 SBML Forum Meeting

(22 Aug. '07) The next SBML Forum Meeting will be held in Long Beach, California, USA, October 5–6, as a satellite workshop of ICSB 2007.

SBML Level 2 Version 3 released!

(16 Jun. '07) Release 1 of the SBML Level 2 Version 3 specification is now available.

2007 SBML Hackathon Coming Soon

(3 Apr. '07) This year's SBML Hackathon will be held at the University of Newcastle, UK. Please join us and don't forget to register ASAP!

SBML Level 2 Version 3 prerelease

(20 Mar. '07) A public review copy of the SBML Level 2 Version 3 specification is now available. Please send us your comments by Apr. 20.

SBML issue reporting system

(13 Jan. '07) There is now an issue reporting and tracking system available for SBML specifications. Revisions of SBML documents will refer to issues logged in this system.

SBML Level 2 Version 2 released!

(25 Sep. '06) The final version of the SBML Level 2 Version 2 specification is now available!

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