SBML Software Matrix

This matrix provides an at-a-glance summary of software known to us to provide some degree of support for reading, writing, or otherwise working with SBML. The columns' meanings are explained below. For a list of longer descriptions grouped into themes, please see our SBML Software Summary page.

Capabilities Frameworks API Dep. Platforms SBML Availabil.
     
acslXtreme W $ $
AVIS various L F F F
BALSA Sigtran
BASIS
BiNoM L, W, M F F
BiNoM Cytoscape Plugin Cytoscape L, W, M F F
BIOCHAM L,W,M F F
BioCharon CHARON
Biological Networks L,W,M F $
ByoDyn Python L,M F F
BioCyc F $
BioGrid
BioModels B F F
BioNetGen L,W,M F F
BioPathwise W $ $
Bio Sketch Pad BioCharon F F
BioSens BSP L,W F F
BioSPICE Dashboard L,W,M
BioSpreadsheet BSP
BioTapestry L,W,M F F
BioUML L,W,M F F
braincirc L F F
BSTLab MATLAB F F
CADLIVE .NET W F F
CellDesigner Java L,W,M F F
Cellerator MMA L,W,M F $
Cell Illustrator L,W,M $ $
CellML2SBML L,W F F
CellNetAnalyzer MATLAB MATLAB L,W,M F $
Cellware L,W,M F $
CL-SBML LISP LISP L F F
CLEML L,W F F
COPASI L,W,M F $
Cyto-Sim L,W,M F F
Cytoscape Java L,W,M F F
DBSolve F F
Dizzy L,W,M F F
E-CELL L,W F F
ecellJ F F
EPE Java L,W, M F F
ESS BSP F F
Fluxor BSP L F F
Genetdes L F $
Gepasi L,W F F
Gillespie2 C++, Python L,W,M F F
GNA L,W,M F $
HSMB BioCharon
HybridSBML BioCharon
iBioSim L,W, M F F
Insilico Discovery L, W, M $ $
JACOBIAN F $
Jarnac SBW SBW W F F
JDesigner SBW SBW W F F
JigCell XPP L,M F F
JSim Java, C L,W,M F F
JWS Online B F F
Karyote* B F F
KEGG2SBML L,W,M F $
Kineticon B F F
Kinsolver* B
libSBML (many) L,W,M F F
MathSBML MMA MMA L,W,M F F
Medicel $ $
MesoRD L,W,M F F
Meta-All Oracle L,W,M F F
Metatool MATLAB, Octave MATLAB or Octave L,W,M F $
MetaFluxNet .NET W F $
MIRIAM
MMT2 L
Modesto L F F
Moleculizer L F F
Monod L,M F F
Narrator L,W,M F F
NetBuilder' Python L,W,M F F
NetPro $ $
Oscill8 W F F
PANTHER Pathway L,W,M F F
PathArt $ $
Pathway Analyser L F F
PathwayLab MATLAB, MMA Visio W $ $
Pathway Tools F $
Pathway Builder BSP L,W,M F F
PATIKAweb B F $
PaVESy L,W,M
PET Perl L,W F F
PhysioLab Modeler
PNK SBW L,W,M F F
PottersWheel MATLAB L,W,M F F
ProcessDB ? ?
ProMoT L F F
PROTON Java, CORBA J2SDK, FastObjects L,W,M (Client), W (Server) F F
pysbml Python Python L F F
PySCeS Python Python L,W,M F F
RANGE R L F F
Reactome B F F
RMBNToolbox MATLAB L,W,M F F
roadRunner SBW L,W,M F F
RSBML R R L,W,M F F
Pathway Solver Pathway Studio F $
SABIO-RK B F $
SBML ODE Solver C L,W,M F F
SBML-PET L,W F F
SBMLeditor L,W,M F F
SBMLR R R L,W,M F F
SBML-SAT MATLAB L,W,M F F
SBMLSim BioCharon F F
SBMLsqueezer Java CellDesigner L, W, M F F
SBMLToolbox MATLAB MATLAB L,W F F
SBO B F F
SBToolbox2 MATLAB MATLAB, SBML Toolbox L,W, M F F
SBW L,W,M F F
SCIpath L,W,M
semanticSBML Python L,W,M F F
Sigmoid* L,W,M F F
SIGNALIGN B
SigPath L F F
SigTran
SIMBA MATLAB W $ $
SimBiology MATLAB L,W,M $ $
Simpathica Octave L,W F F
SimPheny* $ $
SimWiz L,W F F
SloppyCell Python L,W,M F F
SmartCell L,W,M F $
SRS Pathway Editor