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KEGG2SBML

Version 1.5.0 released 28 July 2008
Akiya Jouraku, Nobuyuki Ohta and Akira Funahashi

KEGG2SBML can convert KEGG (Kyoto Encyclopedia of Genes and Genomes) Pathway database files to SBML using the KEGG LIGAND database. KEGG2SBML's capabilities are currently limited to converting only KEGG Metabolic Pathway files and not other types of KEGG files. It is written in Perl.

KEGG2SBML can convert KEGG Pathway Database Release 46.0 or later. (Past releases of KEGG Pathway Database have not been tested and may not be converted by KEGG2SBML.)

KEGG2SBML can generate SBML Level 1 and Level 2 (Version 1), with or without annotations used by CellDesigner and SBML Level 2 Version 2 and Level 2 Version 3 without annotations.


It has been tested under Linux, FreeBSD and MacOSX, but it should work on other operating systems. Please consult the Installation page for more information about the requirements.

This software was developed thanks to generous funding from the Japan Science and Technology Agency under the ERATO-SORST Kitano Symbiotic Systems Project.

KEGG2SBML was presented in the following conference posters:

  1. Converting KEGG pathway database to SBML, Funahashi, A., Jouraku, A., and Kitano, H.
    8th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2004).
  2. Converting the KEGG pathway database to SBML, Funahashi, A., Jouraku, A., and Kitano, H.
    5th International Conference on Systems Biology (ICSB 2004), October, 2004.


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This page was last modified 01:14, 5 September 2008.



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