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Installation

Requirements

KEGG2SBML 1.5.0 requires the following software:

  1. Perl 5 version 5.8.0 or later

KEGG2SBML requires the following database files:

  1. KEGG Pathway database files available from
  2. LIGAND database files for the following (available from ftp://ftp.genome.jp/pub/kegg/ligand/ and ftp://ftp.genome.jp/pub/kegg/release/):
    1. compound
    2. enzyme
    3. reaction
    4. reaction_mapformula.lst

Academic users may freely download the KEGG data files from the GenomeNet ftp site. Non-academic users are required to obtain a license agreement through the licensor, Pathway Solutions Inc., for downloading the KEGG data. For more information, please refer to http://www.genome.jp/kegg/legal.html

Download and installation

First, download the current release version of KEGG2SBML from SourceForge.net. The current release of KEGG2SBML at the time of this writing is version 1.5.0 (kegg2sbml-1.5.0.tar.gz), released on July 28, 2008.

After you've downloaded KEGG2SBML, extract the archive thus:

tar xvzf kegg2sbml-1.5.0.tar.gz
cd kegg2sbml-1.5.0

Check that your copy of the perl command is located in /usr/bin/perl on your computer. If this is not so, put perl in /usr/bin/perl or else change the path to perl at the top of the bin/kegg2sbml file downloaded in this distribution of KEGG2SBML.

Next, create the Makefile and issue the commands to install KEGG2SBML:

perl Makefile.PL
make
sudo make install  

make install copies the executable Perl script kegg2sbml to /usr/local/bin on your computer and it also installs additional Perl modules used by kegg2sbml into the Perl module directory on your computer system.

Retrieved from "http://sbml.org/Software/KEGG2SBML/Installation"

This page was last modified 14:15, 28 July 2008.



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