In[36]:=

m = SBMLRead["stoic.xml", context None , verbose True, SBMLMassBalan ... #62754; True, verboseMassBalanceEquations True, verboseMassActionEquations True] ;

File Name:stoic.xml\nSBML Level 2 Version 1

Model Name: stoichiometry⎵matrix⎵example\nModel id: stoichiometry⎵matrix⎵example

Function Definitions

----- None -----

Unit Definitions (Excluding Built-in Units)

----- None -----

Compartments

ID Name Dimension Size Units Derived Units Outside Constant
C C 3 ··· volume litre ··· True

Species

ID Name Compartment initialType Value Units of the Species Derived Units of the Species B.C Constant Charge
S1 S1 C initialAmount 1 substance/volume mole/litre False False ···
S2 S2 C initialAmount 1 substance/volume mole/litre False False ···
S3 S3 C initialAmount 1 substance/volume mole/litre False False ···
S4 S4 C initialAmount 1 substance/volume mole/litre False False ···
S5 S5 C initialAmount 1 substance/volume mole/litre False False ···

Global Parameters

----- None -----

Rules

----- None -----

Reactions, global and local contexts suppressed

ID Name Fast Reaction Modifiers Parameters Formula Contribution to ODEs
reaction1 reaction1 False S1 →  S2 ··· ··· ··· ···
reaction2 reaction2 False S2 + 5S3 →  2S2 + 4S3 ··· ··· ··· ···
reaction3 reaction3 False S3 →  S4 ··· ··· ··· ···
reaction4 reaction4 False S4 →  S5 ··· ··· ··· ···

Differential Equations, global context suppressed

----- None -----

Stoichiometry Matrix based on Reaction Stoichiometries

Species reaction1 reaction2 reaction3 reaction4
S1 -1 0 0 0
S2 1 1 0 0
S3 0 -1 -1 0
S4 0 0 1 -1
S5 0 0 0 1

Mass Balance Equations based on Stoichiometry Matrix

Species [Species'[t]]=[Stoichometries][rates]
S1 S1'[t] == -v[1]
S2 S2'[t] == v[1] + v[2]
S3 S3'[t] == -v[2] - v[3]
S4 S4'[t] == v[3] - v[4]
S5 S5'[t] == v[4]

Mass Action Equations based on Stoichiometry Matrix

Species [Species'[t]]=[Stoichometries][mass-action-rates]
S1 S1'[t]==-(S1[t]*v[1])
S2 S2'[t]==S1[t]*v[1] + S2[t]*S3[t]^5*v[2]
S3 S3'[t]==-(S2[t]*S3[t]^5*v[2]) - S3[t]*v[3]
S4 S4'[t]==S3[t]*v[3] - S4[t]*v[4]
S5 S5'[t]==S4[t]*v[4]

Events

----- None -----

Created by Mathematica  (November 15, 2004)