libSBML C++ API  5.13.0
File List
Here is a list of all files with brief descriptions:
 AlgebraicRule.cppImplementations of AlgebraicRule
 AlgebraicRule.hDefinitions of AlgebraicRule
 AssignmentRule.cppImplementations of AssignmentRule
 AssignmentRule.hDefinitions of AssignmentRule
 Association.cppImplementation of Association, the contents of a GeneAssociation
 Association.hDefinition of Association, the contents of a GeneAssociation
 ASTBase.cpp
 ASTBase.h
 ASTBasePlugin.cpp
 ASTBasePlugin.h
 ASTBinaryFunctionNode.cpp
 ASTBinaryFunctionNode.h
 ASTCiFunctionNode.cpp
 ASTCiFunctionNode.h
 ASTCiNumberNode.cpp
 ASTCiNumberNode.h
 ASTCnBase.cpp
 ASTCnBase.h
 ASTCnExponentialNode.cpp
 ASTCnExponentialNode.h
 ASTCnIntegerNode.cpp
 ASTCnIntegerNode.h
 ASTCnRationalNode.cpp
 ASTCnRationalNode.h
 ASTCnRealNode.cpp
 ASTCnRealNode.h
 ASTConstantNumberNode.cpp
 ASTConstantNumberNode.h
 ASTCSymbol.cpp
 ASTCSymbol.h
 ASTCSymbolAvogadroNode.cpp
 ASTCSymbolAvogadroNode.h
 ASTCSymbolDelayNode.cpp
 ASTCSymbolDelayNode.h
 ASTCSymbolTimeNode.cpp
 ASTCSymbolTimeNode.h
 ASTFunction.cpp
 ASTFunction.h
 ASTFunctionBase.cpp
 ASTFunctionBase.h
 ASTLambdaFunctionNode.cpp
 ASTLambdaFunctionNode.h
 ASTNaryFunctionNode.cpp
 ASTNaryFunctionNode.h
 ASTNode.cppBase Abstract Syntax Tree (AST) class
 ASTNode.hAbstract Syntax Tree (AST) for representing formula trees
 ASTNumber.cpp
 ASTNumber.h
 ASTPiecewiseFunctionNode.cpp
 ASTPiecewiseFunctionNode.h
 ASTQualifierNode.cpp
 ASTQualifierNode.h
 ASTSemanticsNode.cpp
 ASTSemanticsNode.h
 ASTTypes.cpp
 ASTTypes.hAbstract Syntax Tree (AST) class types
 ASTUnaryFunctionNode.cpp
 ASTUnaryFunctionNode.h
 BoundingBox.cppImplementation of BoundingBox for SBML Layout
 BoundingBox.hDefinition of BoundingBox for SBML Layout
 CobraToFbcConverter.cppImplementation of a cobra 2 fbc converter
 CobraToFbcConverter.hDefinition of a cobra 2 fbc converter
 common-documentation.hCommon text fragments used throughout libSBML's code documentation
 common-sbmlerror-codes.h
 common.hCommon functions and macros for C and C++
 Compartment.cppImplementations of Compartment and ListOfCompartments
 Compartment.hDefinitions of Compartment and ListOfCompartments
 CompartmentGlyph.cppImplementation of CompartmentGlyph for SBML Layout
 CompartmentGlyph.hDefinition of CompartmentGlyph for SBML Layout
 CompartmentType.cppImplementation of CompartmentType and ListOfCompartmentTypes
 CompartmentType.hDefinitions of CompartmentType and ListOfCompartmentTypes
 CompBase.cpp
 CompBase.h
 CompConsistencyValidator.cpp
 CompConsistencyValidator.h
 CompExtension.cppImplementation of CompExtension, the core module of comp package
 CompExtension.hDefinition of CompExtension, the core module of comp package
 CompExtensionTypes.hInclude all SBML types of Comp extension in a single header file
 CompFlatteningConverter.cppImplementation of a first flattening converter
 CompFlatteningConverter.hDefinition of a first flattening converter
 compfwd.hSBML Comp C structure declarations
 CompIdentifierConsistencyValidator.cpp
 CompIdentifierConsistencyValidator.h
 CompModelPlugin.cppImplementation of CompModelPlugin, the plugin class of comp package for the SBase element
 CompModelPlugin.hDefinition of CompModelPlugin, the plugin class of comp package for the Model element
 CompSBasePlugin.cppImplementation of CompSBasePlugin, the plugin class of comp package for the SBase element
 CompSBasePlugin.hDefinition of CompSBasePlugin, the plugin class of comp package for the Model element
 CompSBMLDocumentPlugin.cppImplementation of CompSBMLDocumentPlugin, the plugin class of comp package for the SBase element
 CompSBMLDocumentPlugin.hDefinition of CompSBMLDocumentPlugin, the plugin class of comp package for the Model element
 CompSBMLError.hRepresents SBML errors and other diagnostics
 CompSBMLErrorTable.hRepresents SBML errors and other diagnostics
 CompUnitConsistencyValidator.cpp
 CompUnitConsistencyValidator.h
 CompValidator.cpp
 CompValidator.hBase class for SBML CompValidators
 ConsistencyValidator.cpp
 ConsistencyValidator.h
 Constraint.cppImplementations of Constraint and ListOfConstraints
 Constraint.hDefinitions of Constraint and ListOfConstraints
 ConstraintMacros.hDefines the validator constraint "language"
 ConversionOption.cppImplementation of ConversionOption, the class encapsulating conversion options
 ConversionOption.hDefinition of ConversionOption, the class encapsulating conversion options
 ConversionProperties.cppImplemenentation of ConversionProperties, the class encapsulating conversion configuration
 ConversionProperties.hDefinition of ConversionProperties, the class encapsulating conversion configuration
 CubicBezier.cppImplementation of CubicBezier for SBML Layout
 CubicBezier.hDefinition of CubicBezier for SBML Layout
 Curve.cppImplementation of Curve for SBML Layout
 Curve.hDefinition of Curve for SBML Layout
 CVTerm.cppCVTerm I/O
 CVTerm.hDefinition of a CVTerm class for adding annotations to a Model
 Date.cppDate I/O
 Date.hDate I/O
 DefaultTerm.cppImplementation of the DefaultTerm class
 DefaultTerm.hImplementation of the DefaultTerm class
 Delay.cppImplementation of Delay
 Delay.hDefinition of Delay
 Deletion.cppImplementation of Deletion, the SBaseRef derived class of deletions package
 Deletion.hDefinition of Deletion, the SBase derived class of deletions package
 Dimensions.cppImplementation of Dimensions for SBML Layout
 Dimensions.hDefinition of Dimensions for SBML Layout
 ElementFilter.cpp
 ElementFilter.hBase class of element filters
 Event.cppImplementations of Event and ListOfEvents
 Event.hDefinitions of Event and ListOfEvents
 EventAssignment.cppImplementation of EventAssignment
 EventAssignment.hDefinition of EventAssignment and ListOfEventAssignments
 ExpatAttributes.cpp
 ExpatAttributes.h
 ExpatHandler.cpp
 ExpatHandler.h
 ExpatParser.cpp
 ExpatParser.h
 ExpectedAttributes.cppImplementation of ExpectedAttributes, the class allowing the specification of attributes to expect
 ExpectedAttributes.hDefinition of ExpectedAttributes, the class allowing the specification of attributes to expect
 extern.hDefinitions of LIBSBML_EXTERN and related things
 ExternalModelDefinition.cppImplementation of ExternalModelDefinition, the SBase-derived class of the comp package
 ExternalModelDefinition.hDefinition of ExternalModelDefinition, the SBase derived class of the comp package
 FbcAnd.cppImplementation of the FbcAnd class
 FbcAnd.hImplementation of the FbcAnd class
 FbcAssociation.cppImplementation of the FbcAssociation class
 FbcAssociation.hImplementation of the FbcAssociation class
 FbcConsistencyValidator.cpp
 FbcConsistencyValidator.h
 FbcExtension.cppImplementation of FbcExtension, the core module of fbc package
 FbcExtension.hDefinition of FbcExtension, the core module of fbc package
 FbcExtensionTypes.hIncludes all SBML types of the fbc package extension in a single header file
 fbcfwd.hImplementation of the fbcfwd class
 FbcIdentifierConsistencyValidator.cpp
 FbcIdentifierConsistencyValidator.h
 FbcModelPlugin.cppImplementation of FbcModelPlugin, the plugin class of the fbc package for the Model element
 FbcModelPlugin.hDefinition of FbcModelPlugin, the plugin class of fbc package for the Model element
 FbcOr.cppImplementation of the FbcOr class
 FbcOr.hImplementation of the FbcOr class
 FbcReactionPlugin.cppImplementation of the FbcReactionPlugin class
 FbcReactionPlugin.hImplementation of the FbcReactionPlugin class
 FbcSBMLDocumentPlugin.cppImplementation of the FbcSBMLDocumentPlugin class
 FbcSBMLDocumentPlugin.hImplementation of the FbcSBMLDocumentPlugin class
 FbcSBMLError.hRepresents SBML errors and other diagnostics
 FbcSBMLErrorTable.hRepresents SBML errors and other diagnostics
 FbcSpeciesPlugin.cppImplementation of FbcSpeciesPlugin, the plugin class of the fbc package for the Species element
 FbcSpeciesPlugin.hDefinition of FbcSpeciesPlugin, the plugin class of the fbc package for the Species element
 FbcToCobraConverter.cppImplementation of a fbc 2 cobra converter
 FbcToCobraConverter.hDefinition of a fbc 2 cobra converter
 FbcV1ToV2Converter.cppImplementation of a fbc v1 to fbc v2 converter
 FbcV1ToV2Converter.hDefinition of a fbc v1 to fbc v2 converter
 FbcV2ToV1Converter.cppImplementation of a fbc v2 to fbc v1 converter
 FbcV2ToV1Converter.hDefinition of a fbc v2 to fbc v1 converter
 FbcValidator.cppBase class for SBML Validators
 FbcValidator.hBase class for SBML CompValidators
 FluxBound.cppImplementation of FluxBound, the SBase derived class of the fbc package
 FluxBound.hDefinition of FluxBound, the SBase derived class of the fbc package
 FluxObjective.cppImplementation of the FluxObjective class
 FluxObjective.hDefinition of FluxObjective, the SBase derived class of the fbc package
 FormulaFormatter.cFormats an AST formula tree as an SBML formula string
 FormulaFormatter.hFormats an AST formula tree as an SBML formula string
 FormulaParser.cParses an SBML formula string into an AST
 FormulaParser.hParses an SBML formula string into an AST
 FormulaTokenizer.cTokenizes an SBML formula string
 FormulaTokenizer.hTokenizes an SBML formula string
 FunctionDefinition.cppImplementation of FunctionDefinition and ListOfFunctionDefinitions
 FunctionDefinition.hDefinitions of FunctionDefinition and ListOfFunctionDefinitions
 FunctionTerm.cppImplementation of the FunctionTerm class
 FunctionTerm.hImplementation of the FunctionTerm class
 GeneAssociation.cppImplementation of GeneAssociation, the SBase derived class of the fbc package
 GeneAssociation.hDefinition of GeneAssociation, the SBase derived class of the fbc package
 GeneProduct.cppImplementation of the GeneProduct class
 GeneProduct.hImplementation of the GeneProduct class
 GeneProductAssociation.cppImplementation of the GeneProductAssociation class
 GeneProductAssociation.hImplementation of the GeneProductAssociation class
 GeneProductRef.cppImplementation of the GeneProductRef class
 GeneProductRef.hImplementation of the GeneProductRef class
 GeneralGlyph.cppImplementation of GeneralGlyph for SBML Layout
 GeneralGlyph.hDefinition of GeneralGlyph for SBML Layout
 GraphicalObject.cppImplementation of GraphicalObject for SBML Layout
 GraphicalObject.hDefinition of GraphicalObject for SBML Layout
 Group.cppImplementation of the Group class
 Group.hDefinition of the Group class
 GroupsConsistencyValidator.cpp
 GroupsConsistencyValidator.h
 GroupsExtension.cppImplementation of GroupsExtension
 GroupsExtension.hDefinition of GroupsExtension
 GroupsExtensionTypes.hDefinition of GroupsExtensionTypes
 groupsfwd.hDefinition of groupsfwd
 GroupsIdentifierConsistencyValidator.cpp
 GroupsIdentifierConsistencyValidator.h
 GroupsModelPlugin.cppImplementation of the GroupsModelPlugin class
 GroupsModelPlugin.hDefinition of the GroupsModelPlugin class
 GroupsSBMLDocumentPlugin.cppImplementation of the GroupsSBMLDocumentPlugin class
 GroupsSBMLDocumentPlugin.hDefinition of the GroupsSBMLDocumentPlugin class
 GroupsSBMLError.hDefinition of the GroupsSBMLError class
 GroupsSBMLErrorTable.hDefinition of the GroupsSBMLErrorTable class
 GroupsValidator.cppDefinition of GroupsValidator
 GroupsValidator.hDefinition of GroupsValidator
 IdentifierConsistencyValidator.cpp
 IdentifierConsistencyValidator.h
 IdentifierTransformer.cpp
 IdentifierTransformer.h
 IdFilter.cpp
 IdFilter.h
 IdList.cpp
 IdList.h
 InitialAssignment.cppImplementation of InitialAssignment and ListOfInitialAssignments
 InitialAssignment.hDefinitions of InitialAssignment and ListOfInitialAssignments
 Input.cppImplementation of the Input class
 Input.hImplementation of the Input class
 InternalConsistencyValidator.cpp
 InternalConsistencyValidator.h
 ISBMLExtensionNamespaces.cpp
 ISBMLExtensionNamespaces.h
 KineticLaw.cppImplementation of KineticLaw
 KineticLaw.hDefinition of KineticLaw
 L1CompatibilityValidator.cpp
 L1CompatibilityValidator.h
 L2v1CompatibilityValidator.cpp
 L2v1CompatibilityValidator.h
 L2v2CompatibilityValidator.cpp
 L2v2CompatibilityValidator.h
 L2v3CompatibilityValidator.cpp
 L2v3CompatibilityValidator.h
 L2v4CompatibilityValidator.cpp
 L2v4CompatibilityValidator.h
 L3FormulaFormatter.cFormats an AST formula tree as an SBML L3 formula string
 L3FormulaFormatter.hFormats an L3 AST formula tree as an SBML formula string
 L3Parser.cpp
 L3Parser.hDefinition of the level 3 infix-to-mathml parser C functions
 L3ParserSettings.cppDefinition of the level 3 infix-to-mathml parser settings
 L3ParserSettings.hDefinition of the level 3 infix-to-mathml parser settings
 L3v1CompatibilityValidator.cpp
 L3v1CompatibilityValidator.h
 Layout.cppImplementation of Layout for SBML Layout
 Layout.hDefinition of Layout for SBML Layout
 LayoutAnnotation.cppLayout annotation I/O
 LayoutAnnotation.hLayout annotation I/O
 LayoutConsistencyValidator.cpp
 LayoutConsistencyValidator.h
 LayoutExtension.cppImplementation of LayoutExtension, the core module of layout package
 LayoutExtension.hDefinition of LayoutExtension, the core module of layout package
 LayoutExtensionTypes.hInclude all SBML types of layout extension in a single header file
 layoutfwd.hC Structure declarations for SBML Layout
 LayoutIdentifierConsistencyValidator.cpp
 LayoutIdentifierConsistencyValidator.h
 LayoutModelPlugin.cppImplementation of LayoutModelPlugin, the plugin class of layout package for the Model element
 LayoutModelPlugin.hDefinition of LayoutModelPlugin, the plugin class of layout package for Model element
 LayoutSBMLDocumentPlugin.cppImplementation of the LayoutSBMLDocumentPlugin class
 LayoutSBMLDocumentPlugin.hImplementation of the LayoutSBMLDocumentPlugin class
 LayoutSBMLError.hImplementation of the LayoutSBMLError class
 LayoutSBMLErrorTable.h
 LayoutSpeciesReferencePlugin.cppImplementation of LayoutSpeciesReferencePlugin, the plugin object of layout package (Level2) for the SpeciesReference and ModifierSpeciesReference elements
 LayoutSpeciesReferencePlugin.hDefinition of LayoutSpeciesReferencePlugin, the plugin class of layout package (Level2) for the SpeciesReference and ModifierSpeciesReference elements
 LayoutUtilities.cppImplementation of some methods used by many of the layout files
 LayoutUtilities.hDefinition of LayoutUtilities for SBML Layout
 LayoutValidator.cppImplementation of the LayoutValidator class
 LayoutValidator.hImplementation of the LayoutValidator class
 libsbml-config-common.hConfiguration variables
 libsbml-config.hDecides whether to #include Unix or Windows configuration variables
 libsbml-namespace.hDefines C++ namespace of libSBML
 libsbml-package.hDefinitions of the PACKAGE_ variables
 libsbml-version.cppDefine libSBML version numbers for access from client software
 libsbml-version.hDefine libSBML version numbers for access from client software
 LibXMLAttributes.cpp
 LibXMLAttributes.h
 LibXMLHandler.cpp
 LibXMLHandler.h
 LibXMLNamespaces.cppExtracts XML namespace declarations from LibXML prefix/URI pairs
 LibXMLNamespaces.hExtracts XML namespace declarations from LibXML prefix/URI pairs
 LibXMLParser.cpp
 LibXMLParser.h
 LibXMLTranscode.cpp
 LibXMLTranscode.h
 LineSegment.cppImplementation of LineSegment for SBML Layout
 LineSegment.hDefinition of LineSegment for SBML Layout
 List.cppSimple, generic list class
 List.hSimple, generic list utility class
 ListOf.cppWraps List and inherits from SBase
 ListOf.h
 ListOfDeletions.cppImplementation of ListOfDeletions
 ListOfDeletions.hDefinition of ListOfDeletions, the SBase derived class of deletions package
 ListOfExternalModelDefinitions.cppImplementation of ListOfExternalModelDefinitions
 ListOfExternalModelDefinitions.hDefinition of ListOfExternalModelDefinitions, the SBase derived class of externalModelDefinitions package
 ListOfGroups.cppImplementation of the ListOfGroups class
 ListOfGroups.hDefinition of the ListOfGroups class
 ListOfMembers.cppImplementation of the ListOfMembers class
 ListOfMembers.hDefinition of the ListOfMembers class
 ListOfModelDefinitions.cpp
 ListOfModelDefinitions.hDefinition of ListOfModelDefinitions, the SBase derived class of modelDefinitions package
 ListOfPorts.cppImplementation of ListOfPorts
 ListOfPorts.hDefinition of ListOfPorts, the SBase derived class of ports package
 ListOfReplacedElements.cpp
 ListOfReplacedElements.hDefinition of ListOfReplacedElements, the SBase derived class of replacedElements package
 ListOfSubmodels.cppImplementation of ListOfSubmodels
 ListOfSubmodels.hDefinition of ListOfSubmodels, the SBase derived class of submodels package
 LocalParameter.cppImplementations of LocalLocalParameter and ListOfLocalLocalParameters
 LocalParameter.hDefinitions of LocalParameter and ListOfLocalParameters
 MathML.cppUtilities for reading and writing MathML to/from text strings
 MathML.hUtilities for reading and writing MathML to/from text strings
 MathMLConsistencyValidator.cpp
 MathMLConsistencyValidator.h
 Member.cppImplementation of the Member class
 Member.hDefinition of the Member class
 memory.c
 memory.h
 MetaIdFilter.cpp
 MetaIdFilter.h
 Model.cppImplementation of Model
 Model.hDefinition of Model
 ModelCreator.cppModelCreator I/O
 ModelCreator.hModelCreator I/O
 ModelDefinition.cppImplementation of ModelDefinition, the Subelement derived class of modelDefinitions package
 ModelDefinition.hDefinition of ModelDefinition, the SBase derived class of the comp package
 ModelHistory.cppModelHistory I/O
 ModelHistory.hModelHistory I/O
 ModelingPracticeValidator.cpp
 ModelingPracticeValidator.h
 ModifierSpeciesReference.cppImplementation of ModifierSpeciesReference
 ModifierSpeciesReference.hDefinitions of ModifierSpeciesReference
 Objective.cppImplementation of the Objective class
 Objective.hDefinition of Objective, the SBase derived class of the fbc package
 operationReturnValues.cppEnumeration of values returned by operations within libSBML
 operationReturnValues.hEnumeration of values returned by operations within libSBML
 Output.cppImplementation of the Output class
 Output.hImplementation of the Output class
 OverdeterminedValidator.cpp
 OverdeterminedValidator.h
 Parameter.cppImplementations of Parameter and ListOfParameters
 Parameter.hDefinitions of Parameter and ListOfParameters
 Point.cppImplementation of Point for SBML Layout
 Point.hDefinition of Point for SBML Layout
 Port.cppImplementation of Port, the SBase-derived class of the comp package
 Port.hDefinition of Port, the SBase derived class of the comp package
 PrefixTransformer.cpp
 PrefixTransformer.h
 Priority.cppImplementation of Priority
 Priority.hDefinition of Priority
 QualConsistencyValidator.cpp
 QualConsistencyValidator.h
 QualExtension.cppImplementation of QualExtension, the core module of qual package
 QualExtension.hDefinition of QualExtension, the core module of qual package
 QualExtensionTypes.hInclude all SBML types of qual extension in a single header file
 qualfwd.hSBML Qual C structure declarations
 QualIdentifierConsistencyValidator.cpp
 QualIdentifierConsistencyValidator.h
 QualitativeSpecies.cppImplementation of the QualitativeSpecies class
 QualitativeSpecies.hImplementation of the QualitativeSpecies class
 QualMathConsistencyValidator.cpp
 QualMathConsistencyValidator.h
 QualModelPlugin.cppImplementation of QualModelPlugin, the plugin class of qual package for the Model element
 QualModelPlugin.hDefinition of QualModelPlugin, the plugin class of qual package for the Model element
 QualSBMLDocumentPlugin.cppImplementation of QualSBMLDocumentPlugin, the plugin class of qual package for the SBase element
 QualSBMLDocumentPlugin.hImplementation of the QualSBMLDocumentPlugin class
 QualSBMLError.hRepresents SBML errors and other diagnostics
 QualSBMLErrorTable.hRepresents SBML errors and other diagnostics
 QualValidator.cppBase class for SBML Validators
 QualValidator.hImplementation of the QualValidator class
 RateRule.cppImplementations of RateRule
 RateRule.hDefinitions of RateRule
 RDFAnnotation.hRDFAnnotation I/O
 RDFAnnotationParser.cppRDFAnnotation I/O
 RDFAnnotationParser.h
 Reaction.cppImplementations of Reaction and ListOfReactions
 Reaction.hDefinitions of Reaction and ListOfReactions
 ReactionGlyph.cppImplementation of ReactionGlyph for SBML Layout
 ReactionGlyph.hDefinition of ReactionGlyph for SBML Layout
 ReferenceGlyph.cppImplementation of ReferenceGlyph for SBML Layout
 ReferenceGlyph.hDefinition of ReferenceGlyph for SBML Layout
 RegisterConverters.cppRegisters all available converters
 RegisterExtensions.h
 ReplacedBy.cppImplementation of ReplacedBy, the SBaseRef derived class of the comp package
 ReplacedBy.hDefinition of ReplacedBy, the Replacing-derived class of the comp package
 ReplacedElement.cppImplementation of ReplacedElement, the Subelement derived class of replacedElements package
 ReplacedElement.hDefinition of ReplacedElement, the SBase derived class of replacedElements package
 Replacing.cppImplementation of Replacing, the SBaseRef derived class of Replacings package
 Replacing.hDefinition of Replacing, the SBaseRef-derived class of the comp package
 Rule.cppImplementations of Rule and ListOfRules
 Rule.hDefinitions of Rule and ListOfRules
 SBase.cppImplementation of SBase, the base object of all SBML objects
 SBase.hDefinition of SBase, the base object of all SBML objects
 SBaseExtensionPoint.cpp
 SBaseExtensionPoint.hImplementation of SBaseExtensionPoint
 SBasePlugin.cppImplementation of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package
 SBasePlugin.hDefinition of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package
 SBasePluginCreator.hTemplate class for SBasePlugin-based classes
 SBasePluginCreatorBase.cppImplementation of SBasePluginCreatorBase, the base class of SBasePlugin creator classes
 SBasePluginCreatorBase.hDefinition of SBasePluginCreatorBase, the base class of SBasePlugin creator classes
 SBaseRef.cppImplementation of SBaseRef, the SBase-derived class of the comp package
 SBaseRef.hDefinition of SBaseRef, the SBase derived class of the comp package
 SBMLConstructorException.cppImplementation of SBMLConstructorException, the exception class for constructor exceptions
 SBMLConstructorException.hDefinition of SBMLConstructorException, the exception class for constructor exceptions
 SBMLConvert.cppPerforms conversion between SBML levels
 SBMLConverter.cppImplementation of SBMLConverter, the base class of package extensions
 SBMLConverter.hDefinition of SBMLConverter, the base class for SBML conversion
 SBMLConverterRegister.hDefinition of SBMLConverterRegister, a template to register converters
 SBMLConverterRegistry.cpp
 SBMLConverterRegistry.hImplementation of SBMLConverterRegistry, a registry of available converters
 SBMLDocument.cppImplementation of the top-level container for an SBML Model and associated data
 SBMLDocument.hTop-level container for an SBML Model and associated data
 SBMLDocumentPlugin.cppImplementation of SBMLDocumentPlugin, the derived class of SBasePlugin
 SBMLDocumentPlugin.hDefinition of SBMLDocumentPlugin, the derived class of SBasePlugin
 SBMLDocumentPluginNotRequired.cppImplementation of SBMLDocumentPluginNotRequired, the plugin class of layout package for the Model element
 SBMLDocumentPluginNotRequired.hDefinition of SBMLDocumentPluginNotRequired, the plugin class of layout package for the SBMLDocument element, whose 'required' attribute must be 'false'
 SBMLError.cppRepresents SBML errors and other diagnostics
 SBMLError.hRepresents SBML errors and other diagnostics
 SBMLErrorLog.cppStores errors (and messages) encountered while processing SBML
 SBMLErrorLog.hStores errors (and messages) encountered while processing SBML
 SBMLErrorTable.hRepresents SBML errors and other diagnostics
 SBMLExtension.cppImplementation of SBMLExtension, the base class of package extensions
 SBMLExtension.hDefinition of SBMLExtension, the core component of SBML package extension
 SBMLExtensionException.cppSBMLExtensionException class, the exception class for package extension
 SBMLExtensionException.hClass of exceptions thrown in some situations
 SBMLExtensionNamespaces.cppImplementation of C-API for the SBMLExtensionNamespaces class
 SBMLExtensionNamespaces.hClass to store the SBML Level, Version and namespace of a package
 SBMLExtensionRegister.hTemplate class for registering extension packages
 SBMLExtensionRegistry.cppImplementation of SBMLExtensionRegistry, the registry class in which extension packages are registered
 SBMLExtensionRegistry.hThe registry class for tracking package extensions
 SBMLExternalValidator.cpp
 SBMLExternalValidator.h
 SBMLFileResolver.cppImplementation of SBMLFileResolver, the file system based resolver for SBML Documents
 SBMLFileResolver.hA file-based resolver for SBML Documents
 SBMLFunctionDefinitionConverter.cpp
 SBMLFunctionDefinitionConverter.hDefinition of SBMLFunctionDefinitionConverter, a converter replacing function definitions
 sbmlfwd.hForward declarations for all opaque C types
 SBMLIdConverter.cppImplementation of SBMLIdConverter, a converter renaming SIds
 SBMLIdConverter.hDefinition of SBMLIdConverter, a converter renaming SIds
 SBMLInferUnitsConverter.cppImplementation of SBMLInferUnitsConverter
 SBMLInferUnitsConverter.hDefinition of SBMLInferUnitsConverter, infers units for parameters
 SBMLInitialAssignmentConverter.cppImplementation of SBMLInitialAssignmentConverter, a converter inlining initial assignments
 SBMLInitialAssignmentConverter.hDefinition of SBMLInitialAssignmentConverter, a converter inlining function definitions
 SBMLInternalValidator.cppImplementation of SBMLInternalValidator, the validator for all internal validation performed by libSBML
 SBMLInternalValidator.hDefinition of SBMLInternalValidator, the validator for all internal validation performed by libSBML
 SBMLLevel1Version1Converter.cppImplementation of SBMLLevel1Version1Converter
 SBMLLevel1Version1Converter.hDefinition of SBMLLevel1Version1Converter
 SBMLLevelVersionConverter.cppImplementation of SBMLFunctionDefinitionConverter, a converter replacing function definitions
 SBMLLevelVersionConverter.hDefinition of SBMLLevelVersionConverter, the base class for SBML conversion
 SBMLLocalParameterConverter.cppImplementation of SBMLLocalParameterConverter, a converter replacing local parameters with global ones
 SBMLLocalParameterConverter.hDefinition of SBMLLocalParameterConverter, a converter replacing local parameters with global ones
 SBMLNamespaces.cppSBMLNamespaces class to store level/version and namespace
 SBMLNamespaces.hSBMLNamespaces class to store level/version and namespace
 SBMLReactionConverter.cppImplementation of SBMLReactionConverter, a converter changing reactions into rate rules
 SBMLReactionConverter.hDefinition of SBMLReactionConverter, a converter changing reactions into rate rules
 SBMLReader.cppReads an SBML Document into memory
 SBMLReader.hReads an SBML Document into memory
 SBMLResolver.cppImplementation of SBMLResolver, the base class of package extensions
 SBMLResolver.hDefinition of SBMLResolver, the base class for resolving SBML documents
 SBMLResolverRegistry.cpp
 SBMLResolverRegistry.hImplementation of SBMLResolverRegistry, a registry of available resolvers
 SBMLRuleConverter.cpp
 SBMLRuleConverter.hDefinition of SBMLRuleConverter, a converter sorting rules
 SBMLStripPackageConverter.cppImplementation of SBMLStripPackageConverter, the base class of package extensions
 SBMLStripPackageConverter.hDefinition of SBMLStripPackageConverter, the base class for SBML conversion
 SBMLTransforms.cppTransform functions
 SBMLTransforms.h
 SBMLTypeCodes.cppEnumeration to identify SBML objects at runtime
 SBMLTypeCodes.hEnumeration to identify SBML objects at runtime
 SBMLTypes.hInclude all SBML types in a single header file
 SBMLUnitsConverter.cppImplementation of SBMLUnitsConverter, for converting units to SI
 SBMLUnitsConverter.hDefinition of SBMLUnitsConverter, for converting units to SI
 SBMLUri.cppImplementation of SBMLUri, the utility class for handling uris
 SBMLUri.hDefinition of SBMLUri, the utility class for handling URIs
 SBMLValidator.cppImplementation of SBMLValidator, the base class for user callable SBML validators
 SBMLValidator.hDefinition of SBMLValidator, the base class for user callable SBML validators
 SBMLVisitor.cppVisitor Design Pattern for the SBML object tree
 SBMLVisitor.hVisitor Design Pattern for the SBML object tree
 SBMLWriter.cppWrites an SBML Document to file or in-memory string
 SBMLWriter.hWrites an SBML Document to file or in-memory string
 SBO.cppSBO utility functions
 SBO.hSBO utility Function
 SBOConsistencyValidator.cpp
 SBOConsistencyValidator.h
 SimpleSpeciesReference.cppImplementation of SimpleSpeciesReference
 SimpleSpeciesReference.hDefinitions of SimpleSpeciesReference
 Species.cppImplementations of Species and ListOfSpecies
 Species.hDefinitions of Species and ListOfSpecies
 SpeciesGlyph.cppImplementation of SpeciesGlyph for SBML Layout
 SpeciesGlyph.hDefinition of SpeciesGlyph for SBML Layout
 SpeciesReference.cppImplementation of SpeciesReference and ListOfSpeciesReferences
 SpeciesReference.hDefinitions of SpeciesReference and ListOfSpeciesReferences
 SpeciesReferenceGlyph.cppImplementation of SpeciesReferenceGlyph for SBML Layout
 SpeciesReferenceGlyph.hDefinition of SpeciesReferenceGlyph for SBML Layout
 SpeciesReferenceRole.hDefinition of SpeciesReferenceRole enum for SBML Layout
 SpeciesType.cppImplementation of SpeciesType and ListOfSpeciesTypes
 SpeciesType.hDefinitions of SpeciesType and ListOfSpeciesType
 Stack.c
 Stack.h
 StoichiometryMath.cppImplementation of StoichiometryMath
 StoichiometryMath.hDefinition of StoichiometryMath
 StrictUnitConsistencyValidator.cpp
 StrictUnitConsistencyValidator.h
 StringBuffer.c
 StringBuffer.h
 Submodel.cppImplementation of Submodel, the SBase-derived class of the comp package
 Submodel.hDefinition of Submodel, the SBase derived class of the comp package
 SyntaxChecker.cppSyntax checking functions
 SyntaxChecker.hSyntax checking functions
 TextGlyph.cppImplementation of TextGlyph for SBML Layout
 TextGlyph.hDefinition of TextGlyph for SBML Layout
 Transition.cppImplementation of the Transition class
 Transition.hImplementation of the Transition class
 Trigger.cppImplementation of Trigger
 Trigger.hDefinition of Trigger
 Unit.cppImplementations of Unit and ListOfUnits
 Unit.hDefinitions of Unit and ListOfUnits
 UnitConsistencyValidator.cpp
 UnitConsistencyValidator.h
 UnitDefinition.cppImplementations of SBML's UnitDefinition and ListOfUnitDefinitions
 UnitDefinition.hDefinitions of UnitDefinition and ListOfUnitDefinitions
 UnitKind.cSBML UnitKind enumeration
 UnitKind.hDefinition of SBML's UnitKind enumeration
 util.cppUtility functions
 util.hUtility functions
 Validator.cppBase class for SBML Validators
 Validator.hBase class for SBML Validators
 VConstraint.cppBase class for all SBML Validator Constraints
 VConstraint.hBase class for all SBML Validator Constraints
 XercesAttributes.cpp
 XercesAttributes.h
 XercesHandler.cpp
 XercesHandler.h
 XercesNamespaces.cpp
 XercesNamespaces.h
 XercesParser.cpp
 XercesParser.h
 XercesTranscode.cpp
 XercesTranscode.h
 XMLAttributes.cppXMLAttributes are a list of name/value pairs for XMLElements
 XMLAttributes.hXMLAttributes are a list of name/value pairs for XML elements
 XMLBuffer.cpp
 XMLBuffer.h
 XMLConstructorException.cppXMLConstructorException an exception thrown by XML classes
 XMLConstructorException.hXMLConstructorException an exception thrown by XML classes
 XMLError.cppRepresents errors (and messages) encountered during an XML parse
 XMLError.hRepresents errors (and messages) encountered during an XML parse
 XMLErrorLog.cppStores errors (and messages) encountered while processing XML
 XMLErrorLog.hStores errors (and messages) encountered while processing XML
 XMLExtern.hDefines LIBLAX_EXTERN
 XMLFileBuffer.cpp
 XMLFileBuffer.h
 XMLHandler.cpp
 XMLHandler.h
 XMLInputStream.cpp
 XMLInputStream.hXMLInputStream
 XMLLogOverride.cppUtility class implementing a temporary override the severity on error logs
 XMLLogOverride.hUtility class implementing a temporary override the severity on error logs
 XMLMemoryBuffer.cpp
 XMLMemoryBuffer.h
 XMLNamespaces.cppA list of XMLNamespace declarations (URI/prefix pairs)
 XMLNamespaces.hA list of XMLNamespace declarations (URI/prefix pairs)
 XMLNode.cppA node in an XML document tree
 XMLNode.hClass definition of XMLNode, a node in an XML document tree
 XMLOutputStream.cpp
 XMLOutputStream.hXMLOutputStream
 XMLParser.cpp
 XMLParser.h
 XMLToken.cppA unit of XML syntax, either an XML element or text
 XMLToken.hA unit of XML syntax, either an XML element or text
 XMLTokenizer.cpp
 XMLTokenizer.h
 XMLTriple.cppStores an XML namespace triple
 XMLTriple.hStores an XML namespace triple