Package libsbml


Classes
class	_object
class	AlgebraicRule
	LibSBML implementation of SBML's AlgebraicRule construct. More...
class	AssignmentRule
	LibSBML implementation of SBML's AssignmentRule construct. More...
class	ASTNode
	A node in the Abstract Syntax Tree (AST) representation of a mathematical expression. More...
class	ASTNodeList
class	Compartment
	LibSBML implementation of SBML's Compartment construct. More...
class	CompartmentType
	LibSBML implementation of SBML's CompartmentType construct. More...
class	Constraint
	LibSBML implementation of SBML's Constraint construct. More...
class	CVTerm
	Representation of MIRIAM-compliant controlled vocabulary annotation. More...
class	CVTermList
class	Date
	Representation of MIRIAM-compliant dates used in ModelHistory. More...
class	DateList
class	Delay
	LibSBML implementation of SBML's Delay construct for Event. More...
class	Event
	LibSBML implementation of SBML's Event construct. More...
class	EventAssignment
	LibSBML implementation of SBML's EventAssignment construct for Event. More...
class	FunctionDefinition
	LibSBML implementation of SBML's FunctionDefinition construct. More...
class	InitialAssignment
	LibSBML implementation of SBML's InitialAssignment construct. More...
class	KineticLaw
	LibSBML implementation of SBML's KineticLaw construct. More...
class	ListOf
	Parent class for the various SBML 'ListOfXYZ' classes. More...
class	ListOfCompartments
	LibSBML implementation of SBML's ListOfCompartments construct. More...
class	ListOfCompartmentTypes
	LibSBML implementation of SBML's ListOfCompartmentTypes construct. More...
class	ListOfConstraints
	LibSBML implementation of SBML's ListOfConstraints construct. More...
class	ListOfEventAssignments
	LibSBML implementation of SBML's ListOfEventAssignments construct. More...
class	ListOfEvents
	LibSBML implementation of SBML's ListOfEvents construct. More...
class	ListOfFunctionDefinitions
	LibSBML implementation of SBML's ListOfFunctionDefinitions construct. More...
class	ListOfInitialAssignments
	LibSBML implementation of SBML's ListOfInitialAssignments construct. More...
class	ListOfParameters
	LibSBML implementation of SBML's ListOfParameters construct. More...
class	ListOfReactions
	LibSBML implementation of SBML's ListOfReactions construct. More...
class	ListOfRules
	LibSBML implementation of SBML's ListOfRules construct. More...
class	ListOfSpecies
	LibSBML implementation of SBML's ListOfSpecies construct. More...
class	ListOfSpeciesReferences
	LibSBML implementation of SBML's ListOfSpeciesReferences construct. More...
class	ListOfSpeciesTypes
	LibSBML implementation of SBML's ListOfSpeciesTypes construct. More...
class	ListOfUnitDefinitions
	LibSBML implementation of SBML's ListOfUnitDefinitions construct. More...
class	ListOfUnits
	LibSBML implementation of SBML's ListOfUnits construct. More...
class	Model
	LibSBML implementation of SBML's Model construct. More...
class	ModelCreator
	Representation of MIRIAM-compliant model creator data used in ModelHistory. More...
class	ModelCreatorList
class	ModelHistory
	Representation of MIRIAM-compliant model history data. More...
class	ModifierSpeciesReference
	LibSBML implementation of SBML's ModifierSpeciesReference construct. More...
class	ostream
	Proxy of C++ std.basic_ostream<(char)> class. More...
class	ostringstream
	Proxy of C++ std.basic_ostringstream<(char)> class. More...
class	Parameter
	LibSBML implementation of SBML's Parameter construct. More...
class	RateRule
	LibSBML implementation of SBML's RateRule construct. More...
class	RDFAnnotationParser
	Read/write/manipulate RDF annotations stored in SBML annotation elements. More...
class	Reaction
	LibSBML implementation of SBML's Reaction construct. More...
class	Rule
	LibSBML implementation of SBML's Rule construct. More...
class	SBase
	LibSBML implementation of SBase, the base class of all SBML objects. More...
class	SBMLDocument
	Container for an SBML document and interface for global operations on SBML documents. More...
class	SBMLError
	Representation of errors, warnings and other diagnostics. More...
class	SBMLErrorLog
	Log of errors and other events encountered during SBML processing. More...
class	SBMLNamespaces
	Class to store SBML level, version and namespace information. More...
class	SBMLReader
	Methods for reading SBML from files and text strings. More...
class	SBMLWriter
	Methods for writing SBML to files and text strings. More...
class	SBO
	Methods for interacting with Systems Biology Ontology (SBO) terms. More...
class	SimpleSpeciesReference
	LibSBML implementation of SBML's SimpleSpeciesReference construct. More...
class	Species
	LibSBML implementation of SBML's Species construct. More...
class	SpeciesReference
	LibSBML implementation of SBML's SpeciesReference construct. More...
class	SpeciesType
	LibSBML implementation of SBML's SpeciesType construct. More...
class	StoichiometryMath
	LibSBML implementation of SBML's StoichiometryMath construct. More...
class	string
	Proxy of C++ std.basic_string<(char)> class. More...
class	SwigPyIterator
	Proxy of C++ swig.SwigPyIterator class. More...
class	SyntaxChecker
	Methods for checking syntax of ids, metaids and units. More...
class	Trigger
	LibSBML implementation of SBML's Trigger construct for Event. More...
class	Unit
	LibSBML implementation of SBML's Unit construct. More...
class	UnitDefinition
	LibSBML implementation of SBML's UnitDefinition construct. More...
class	XMLAttributes
	Representation of attributes on an XML node. More...
class	XMLError
	Representation of errors, warnings and other diagnostics. More...
class	XMLErrorLog
	Log of errors and other events encountered while processing an XML file or data stream. More...
class	XMLNamespaces
	Representation of XML Namespaces. More...
class	XMLNode
	Representation of a node in an XML document tree. More...
class	XMLOutputStream
class	XMLToken
	Representation of a token in an XML stream. More...
class	XMLTriple
	Representation of a qualified XML name. More...
Functions
def	ASTNode_true
def	conditional_abspath
def	endl
def	flush
def	formulaToString
def	getLibSBMLDottedVersion
def	getLibSBMLVersion
def	getLibSBMLVersionString
def	parseFormula
def	RDFAnnotationParser_createAnnotation
def	RDFAnnotationParser_createCVTerms
def	RDFAnnotationParser_createRDFAnnotation
def	RDFAnnotationParser_createRDFDescription
def	RDFAnnotationParser_deleteRDFAnnotation
def	RDFAnnotationParser_parseCVTerms
def	RDFAnnotationParser_parseModelHistory
def	RDFAnnotationParser_parseRDFAnnotation
def	readMathMLFromString
def	readSBML
def	readSBMLFromFile
def	readSBMLFromString
def	SBMLDocument_getDefaultLevel
def	SBMLDocument_getDefaultVersion
def	SBMLNamespaces_getSBMLNamespaceURI
def	SBMLReader_hasBzip2
def	SBMLReader_hasZlib
def	SBMLTypeCode_toString
def	SBMLWriter_hasBzip2
def	SBMLWriter_hasZlib
def	SBO_checkTerm
def	SBO_intToString
def	SBO_isConservationLaw
def	SBO_isContinuousFramework
def	SBO_isDiscreteFramework
def	SBO_isEntity
def	SBO_isEvent
def	SBO_isFunctionalCompartment
def	SBO_isFunctionalEntity
def	SBO_isInteraction
def	SBO_isKineticConstant
def	SBO_isLogicalFramework
def	SBO_isMaterialEntity
def	SBO_isMathematicalExpression
def	SBO_isModellingFramework
def	SBO_isModifier
def	SBO_isObselete
def	SBO_isParticipant
def	SBO_isParticipantRole
def	SBO_isPhysicalParticipant
def	SBO_isProduct
def	SBO_isQuantitativeParameter
def	SBO_isRateLaw
def	SBO_isReactant
def	SBO_isSteadyStateExpression
def	SBO_stringToInt
def	swig_import_helper
def	SyntaxChecker_hasExpectedXHTMLSyntax
def	SyntaxChecker_isValidSBMLSId
def	SyntaxChecker_isValidUnitSId
def	SyntaxChecker_isValidXMLID
def	Unit_areEquivalent
def	Unit_areIdentical
def	Unit_convertToSI
def	Unit_isBuiltIn
def	Unit_isUnitKind
def	Unit_merge
def	Unit_removeScale
def	UnitDefinition_areEquivalent
def	UnitDefinition_areIdentical
def	UnitDefinition_combine
def	UnitDefinition_convertToSI
def	UnitDefinition_printUnits
def	UnitDefinition_reorder
def	UnitDefinition_simplify
def	UnitKind_equals
def	UnitKind_forName
def	UnitKind_isValidUnitKindString
def	UnitKind_toString
def	writeMathMLToString
def	writeSBML
def	writeSBMLToString
def	XMLError_getStandardMessage
def	XMLNode_convertStringToXMLNode
def	XMLNode_convertXMLNodeToString
Variables
tuple	_libsbml = swig_import_helper()
int	_newclass = 0
	AllChecksON = _libsbml.AllChecksON
	AnnotationNotesNotAllowedLevel1 = _libsbml.AnnotationNotesNotAllowedLevel1
	ApplyCiMustBeModelComponent = _libsbml.ApplyCiMustBeModelComponent
	ApplyCiMustBeUserFunction = _libsbml.ApplyCiMustBeUserFunction
	ArgsToEqNeedSameType = _libsbml.ArgsToEqNeedSameType
	AssignmentToConstantEntity = _libsbml.AssignmentToConstantEntity
	AssignRuleCompartmentMismatch = _libsbml.AssignRuleCompartmentMismatch
	AssignRuleParameterMismatch = _libsbml.AssignRuleParameterMismatch
	AssignRuleSpeciesMismatch = _libsbml.AssignRuleSpeciesMismatch
	AST_CONSTANT_E = _libsbml.AST_CONSTANT_E
	AST_CONSTANT_FALSE = _libsbml.AST_CONSTANT_FALSE
	AST_CONSTANT_PI = _libsbml.AST_CONSTANT_PI
	AST_CONSTANT_TRUE = _libsbml.AST_CONSTANT_TRUE
	AST_DIVIDE = _libsbml.AST_DIVIDE
	AST_FUNCTION = _libsbml.AST_FUNCTION
	AST_FUNCTION_ABS = _libsbml.AST_FUNCTION_ABS
	AST_FUNCTION_ARCCOS = _libsbml.AST_FUNCTION_ARCCOS
	AST_FUNCTION_ARCCOSH = _libsbml.AST_FUNCTION_ARCCOSH
	AST_FUNCTION_ARCCOT = _libsbml.AST_FUNCTION_ARCCOT
	AST_FUNCTION_ARCCOTH = _libsbml.AST_FUNCTION_ARCCOTH
	AST_FUNCTION_ARCCSC = _libsbml.AST_FUNCTION_ARCCSC
	AST_FUNCTION_ARCCSCH = _libsbml.AST_FUNCTION_ARCCSCH
	AST_FUNCTION_ARCSEC = _libsbml.AST_FUNCTION_ARCSEC
	AST_FUNCTION_ARCSECH = _libsbml.AST_FUNCTION_ARCSECH
	AST_FUNCTION_ARCSIN = _libsbml.AST_FUNCTION_ARCSIN
	AST_FUNCTION_ARCSINH = _libsbml.AST_FUNCTION_ARCSINH
	AST_FUNCTION_ARCTAN = _libsbml.AST_FUNCTION_ARCTAN
	AST_FUNCTION_ARCTANH = _libsbml.AST_FUNCTION_ARCTANH
	AST_FUNCTION_CEILING = _libsbml.AST_FUNCTION_CEILING
	AST_FUNCTION_COS = _libsbml.AST_FUNCTION_COS
	AST_FUNCTION_COSH = _libsbml.AST_FUNCTION_COSH
	AST_FUNCTION_COT = _libsbml.AST_FUNCTION_COT
	AST_FUNCTION_COTH = _libsbml.AST_FUNCTION_COTH
	AST_FUNCTION_CSC = _libsbml.AST_FUNCTION_CSC
	AST_FUNCTION_CSCH = _libsbml.AST_FUNCTION_CSCH
	AST_FUNCTION_DELAY = _libsbml.AST_FUNCTION_DELAY
	AST_FUNCTION_EXP = _libsbml.AST_FUNCTION_EXP
	AST_FUNCTION_FACTORIAL = _libsbml.AST_FUNCTION_FACTORIAL
	AST_FUNCTION_FLOOR = _libsbml.AST_FUNCTION_FLOOR
	AST_FUNCTION_LN = _libsbml.AST_FUNCTION_LN
	AST_FUNCTION_LOG = _libsbml.AST_FUNCTION_LOG
	AST_FUNCTION_PIECEWISE = _libsbml.AST_FUNCTION_PIECEWISE
	AST_FUNCTION_POWER = _libsbml.AST_FUNCTION_POWER
	AST_FUNCTION_ROOT = _libsbml.AST_FUNCTION_ROOT
	AST_FUNCTION_SEC = _libsbml.AST_FUNCTION_SEC
	AST_FUNCTION_SECH = _libsbml.AST_FUNCTION_SECH
	AST_FUNCTION_SIN = _libsbml.AST_FUNCTION_SIN
	AST_FUNCTION_SINH = _libsbml.AST_FUNCTION_SINH
	AST_FUNCTION_TAN = _libsbml.AST_FUNCTION_TAN
	AST_FUNCTION_TANH = _libsbml.AST_FUNCTION_TANH
	AST_INTEGER = _libsbml.AST_INTEGER
	AST_LAMBDA = _libsbml.AST_LAMBDA
	AST_LOGICAL_AND = _libsbml.AST_LOGICAL_AND
	AST_LOGICAL_NOT = _libsbml.AST_LOGICAL_NOT
	AST_LOGICAL_OR = _libsbml.AST_LOGICAL_OR
	AST_LOGICAL_XOR = _libsbml.AST_LOGICAL_XOR
	AST_MINUS = _libsbml.AST_MINUS
	AST_NAME = _libsbml.AST_NAME
	AST_NAME_TIME = _libsbml.AST_NAME_TIME
	AST_PLUS = _libsbml.AST_PLUS
	AST_POWER = _libsbml.AST_POWER
	AST_RATIONAL = _libsbml.AST_RATIONAL
	AST_REAL = _libsbml.AST_REAL
	AST_REAL_E = _libsbml.AST_REAL_E
	AST_RELATIONAL_EQ = _libsbml.AST_RELATIONAL_EQ
	AST_RELATIONAL_GEQ = _libsbml.AST_RELATIONAL_GEQ
	AST_RELATIONAL_GT = _libsbml.AST_RELATIONAL_GT
	AST_RELATIONAL_LEQ = _libsbml.AST_RELATIONAL_LEQ
	AST_RELATIONAL_LT = _libsbml.AST_RELATIONAL_LT
	AST_RELATIONAL_NEQ = _libsbml.AST_RELATIONAL_NEQ
	AST_TIMES = _libsbml.AST_TIMES
	AST_UNKNOWN = _libsbml.AST_UNKNOWN
	BadCsymbolDefinitionURLValue = _libsbml.BadCsymbolDefinitionURLValue
	BadlyFormedXML = _libsbml.BadlyFormedXML
	BadMathML = _libsbml.BadMathML
	BadMathMLNodeType = _libsbml.BadMathMLNodeType
	BadProcessingInstruction = _libsbml.BadProcessingInstruction
	BadXMLAttribute = _libsbml.BadXMLAttribute
	BadXMLAttributeValue = _libsbml.BadXMLAttributeValue
	BadXMLComment = _libsbml.BadXMLComment
	BadXMLDecl = _libsbml.BadXMLDecl
	BadXMLDeclLocation = _libsbml.BadXMLDeclLocation
	BadXMLDOCTYPE = _libsbml.BadXMLDOCTYPE
	BadXMLDocumentStructure = _libsbml.BadXMLDocumentStructure
	BadXMLIDRef = _libsbml.BadXMLIDRef
	BadXMLIDValue = _libsbml.BadXMLIDValue
	BadXMLPrefix = _libsbml.BadXMLPrefix
	BadXMLPrefixValue = _libsbml.BadXMLPrefixValue
	BIOLOGICAL_QUALIFIER = _libsbml.BIOLOGICAL_QUALIFIER
	BooleanOpsNeedBooleanArgs = _libsbml.BooleanOpsNeedBooleanArgs
	BothAmountAndConcentrationSet = _libsbml.BothAmountAndConcentrationSet
	BothStoichiometryAndMath = _libsbml.BothStoichiometryAndMath
	BQB_ENCODES = _libsbml.BQB_ENCODES
	BQB_HAS_PART = _libsbml.BQB_HAS_PART
	BQB_HAS_VERSION = _libsbml.BQB_HAS_VERSION
	BQB_IS = _libsbml.BQB_IS
	BQB_IS_DESCRIBED_BY = _libsbml.BQB_IS_DESCRIBED_BY
	BQB_IS_ENCODED_BY = _libsbml.BQB_IS_ENCODED_BY
	BQB_IS_HOMOLOG_TO = _libsbml.BQB_IS_HOMOLOG_TO
	BQB_IS_PART_OF = _libsbml.BQB_IS_PART_OF
	BQB_IS_VERSION_OF = _libsbml.BQB_IS_VERSION_OF
	BQB_OCCURS_IN = _libsbml.BQB_OCCURS_IN
	BQB_UNKNOWN = _libsbml.BQB_UNKNOWN
	BQM_IS = _libsbml.BQM_IS
	BQM_IS_DESCRIBED_BY = _libsbml.BQM_IS_DESCRIBED_BY
	BQM_UNKNOWN = _libsbml.BQM_UNKNOWN
	CannotConvertToL1V1 = _libsbml.CannotConvertToL1V1
	CelsiusNoLongerValid = _libsbml.CelsiusNoLongerValid
	cerr = cvar.cerr
	CircularRuleDependency = _libsbml.CircularRuleDependency
	clog = cvar.clog
	CompartmentShouldHaveSize = _libsbml.CompartmentShouldHaveSize
	CompartmentTypeNotValidAttribute = _libsbml.CompartmentTypeNotValidAttribute
	CompartmentTypeNotValidComponent = _libsbml.CompartmentTypeNotValidComponent
	ConstantNotValidAttribute = _libsbml.ConstantNotValidAttribute
	ConstantSpeciesNotValidAttribute = _libsbml.ConstantSpeciesNotValidAttribute
	ConstraintContainsDOCTYPE = _libsbml.ConstraintContainsDOCTYPE
	ConstraintContainsXMLDecl = _libsbml.ConstraintContainsXMLDecl
	ConstraintMathNotBoolean = _libsbml.ConstraintMathNotBoolean
	ConstraintNotInXHTMLNamespace = _libsbml.ConstraintNotInXHTMLNamespace
	ConstraintNotValidComponent = _libsbml.ConstraintNotValidComponent
	cout = cvar.cout
	cvar = _libsbml.cvar
	DelayUnitsNotTime = _libsbml.DelayUnitsNotTime
	DisallowedDefinitionURLUse = _libsbml.DisallowedDefinitionURLUse
	DisallowedMathMLEncodingUse = _libsbml.DisallowedMathMLEncodingUse
	DisallowedMathMLSymbol = _libsbml.DisallowedMathMLSymbol
	DisallowedMathTypeAttributeUse = _libsbml.DisallowedMathTypeAttributeUse
	DisallowedMathTypeAttributeValue = _libsbml.DisallowedMathTypeAttributeValue
	DuplicateAnnotationInvalidInL2v2 = _libsbml.DuplicateAnnotationInvalidInL2v2
	DuplicateAnnotationInvalidInL2v3 = _libsbml.DuplicateAnnotationInvalidInL2v3
	DuplicateAnnotationInvalidInL2v4 = _libsbml.DuplicateAnnotationInvalidInL2v4
	DuplicateAnnotationNamespaces = _libsbml.DuplicateAnnotationNamespaces
	DuplicateComponentId = _libsbml.DuplicateComponentId
	DuplicateLocalParameterId = _libsbml.DuplicateLocalParameterId
	DuplicateMetaId = _libsbml.DuplicateMetaId
	DuplicateUnitDefinitionId = _libsbml.DuplicateUnitDefinitionId
	DuplicateXMLAttribute = _libsbml.DuplicateXMLAttribute
	EmptyListElement = _libsbml.EmptyListElement
	EmptyListInKineticLaw = _libsbml.EmptyListInKineticLaw
	EmptyListInReaction = _libsbml.EmptyListInReaction
	EmptyListOfUnits = _libsbml.EmptyListOfUnits
	EventAndAssignmentRuleForId = _libsbml.EventAndAssignmentRuleForId
	EventAssignCompartmentMismatch = _libsbml.EventAssignCompartmentMismatch
	EventAssignmentForConstantEntity = _libsbml.EventAssignmentForConstantEntity
	EventAssignParameterMismatch = _libsbml.EventAssignParameterMismatch
	EventAssignSpeciesMismatch = _libsbml.EventAssignSpeciesMismatch
	EventNotValidComponent = _libsbml.EventNotValidComponent
	FailedMathMLReadOfDouble = _libsbml.FailedMathMLReadOfDouble
	FailedMathMLReadOfExponential = _libsbml.FailedMathMLReadOfExponential
	FailedMathMLReadOfInteger = _libsbml.FailedMathMLReadOfInteger
	FailedMathMLReadOfRational = _libsbml.FailedMathMLReadOfRational
	FormulaInLevel1KL = _libsbml.FormulaInLevel1KL
	FuncDefNotValidComponent = _libsbml.FuncDefNotValidComponent
	FunctionDefMathNotLambda = _libsbml.FunctionDefMathNotLambda
	GeneralWarningNotSpecified = _libsbml.GeneralWarningNotSpecified
	HasOnlySubsNoSpatialUnits = _libsbml.HasOnlySubsNoSpatialUnits
	HasOnlySubsUnitsNotValidAttribute = _libsbml.HasOnlySubsUnitsNotValidAttribute
	IdCheckOFF = _libsbml.IdCheckOFF
	IdCheckON = _libsbml.IdCheckON
	IdNotValidAttribute = _libsbml.IdNotValidAttribute
	InconsistentArgUnits = _libsbml.InconsistentArgUnits
	InconsistentArgUnitsWarnings = _libsbml.InconsistentArgUnitsWarnings
	InconsistentExponUnitsWarnings = _libsbml.InconsistentExponUnitsWarnings
	InconsistentPowerUnitsWarnings = _libsbml.InconsistentPowerUnitsWarnings
	IncorrectCompartmentSpatialDimensions = _libsbml.IncorrectCompartmentSpatialDimensions
	IncorrectOrderInConstraint = _libsbml.IncorrectOrderInConstraint
	IncorrectOrderInEvent = _libsbml.IncorrectOrderInEvent
	IncorrectOrderInKineticLaw = _libsbml.IncorrectOrderInKineticLaw
	IncorrectOrderInModel = _libsbml.IncorrectOrderInModel
	IncorrectOrderInReaction = _libsbml.IncorrectOrderInReaction
	InitAssignCompartmenMismatch = _libsbml.InitAssignCompartmenMismatch
	InitAssignmentAndRuleForSameId = _libsbml.InitAssignmentAndRuleForSameId
	InitAssignParameterMismatch = _libsbml.InitAssignParameterMismatch
	InitAssignSpeciesMismatch = _libsbml.InitAssignSpeciesMismatch
	InitialAssignNotValidComponent = _libsbml.InitialAssignNotValidComponent
	InternalXMLParserError = _libsbml.InternalXMLParserError
	Invalid1DCompartmentUnits = _libsbml.Invalid1DCompartmentUnits
	Invalid2DCompartmentUnits = _libsbml.Invalid2DCompartmentUnits
	Invalid3DCompartmentUnits = _libsbml.Invalid3DCompartmentUnits
	InvalidAfterXMLContent = _libsbml.InvalidAfterXMLContent
	InvalidApplyCiInLambda = _libsbml.InvalidApplyCiInLambda
	InvalidAreaRedefinition = _libsbml.InvalidAreaRedefinition
	InvalidAssignRuleVariable = _libsbml.InvalidAssignRuleVariable
	InvalidCharInXML = _libsbml.InvalidCharInXML
	InvalidCiInLambda = _libsbml.InvalidCiInLambda
	InvalidCompartmentSBOTerm = _libsbml.InvalidCompartmentSBOTerm
	InvalidCompartmentTypeRef = _libsbml.InvalidCompartmentTypeRef
	InvalidCompartmentTypeSBOTerm = _libsbml.InvalidCompartmentTypeSBOTerm
	InvalidConstraintContent = _libsbml.InvalidConstraintContent
	InvalidConstraintSBOTerm = _libsbml.InvalidConstraintSBOTerm
	InvalidDelaySBOTerm = _libsbml.InvalidDelaySBOTerm
	InvalidEventAssignmentSBOTerm = _libsbml.InvalidEventAssignmentSBOTerm
	InvalidEventAssignmentVariable = _libsbml.InvalidEventAssignmentVariable
	InvalidEventSBOTerm = _libsbml.InvalidEventSBOTerm
	InvalidFunctionDefReturnType = _libsbml.InvalidFunctionDefReturnType
	InvalidFunctionDefSBOTerm = _libsbml.InvalidFunctionDefSBOTerm
	InvalidIdSyntax = _libsbml.InvalidIdSyntax
	InvalidInitAssignSBOTerm = _libsbml.InvalidInitAssignSBOTerm
	InvalidInitAssignSymbol = _libsbml.InvalidInitAssignSymbol
	InvalidKineticLawSBOTerm = _libsbml.InvalidKineticLawSBOTerm
	InvalidL1CompartmentUnits = _libsbml.InvalidL1CompartmentUnits
	InvalidLengthRedefinition = _libsbml.InvalidLengthRedefinition
	InvalidMathElement = _libsbml.InvalidMathElement
	InvalidMetaidSyntax = _libsbml.InvalidMetaidSyntax
	InvalidModelSBOTerm = _libsbml.InvalidModelSBOTerm
	InvalidModifiersList = _libsbml.InvalidModifiersList
	InvalidNamespaceOnSBML = _libsbml.InvalidNamespaceOnSBML
	InvalidNoArgsPassedToFunctionDef = _libsbml.InvalidNoArgsPassedToFunctionDef
	InvalidNotesContent = _libsbml.InvalidNotesContent
	InvalidParameterSBOTerm = _libsbml.InvalidParameterSBOTerm
	InvalidParameterUnits = _libsbml.InvalidParameterUnits
	InvalidRateRuleVariable = _libsbml.InvalidRateRuleVariable
	InvalidReactantsProductsList = _libsbml.InvalidReactantsProductsList
	InvalidReactionSBOTerm = _libsbml.InvalidReactionSBOTerm
	InvalidRuleOrdering = _libsbml.InvalidRuleOrdering
	InvalidRuleSBOTerm = _libsbml.InvalidRuleSBOTerm
	InvalidSBMLLevelVersion = _libsbml.InvalidSBMLLevelVersion
	InvalidSBOTermSyntax = _libsbml.InvalidSBOTermSyntax
	InvalidSpeciesCompartmentRef = _libsbml.InvalidSpeciesCompartmentRef
	InvalidSpeciesReference = _libsbml.InvalidSpeciesReference
	InvalidSpeciesReferenceSBOTerm = _libsbml.InvalidSpeciesReferenceSBOTerm
	InvalidSpeciesSBOTerm = _libsbml.InvalidSpeciesSBOTerm
	InvalidSpeciesSusbstanceUnits = _libsbml.InvalidSpeciesSusbstanceUnits
	InvalidSpeciesTypeRef = _libsbml.InvalidSpeciesTypeRef
	InvalidSpeciesTypeSBOTerm = _libsbml.InvalidSpeciesTypeSBOTerm
	InvalidSubstanceRedefinition = _libsbml.InvalidSubstanceRedefinition
	InvalidTimeRedefinition = _libsbml.InvalidTimeRedefinition
	InvalidTriggerSBOTerm = _libsbml.InvalidTriggerSBOTerm
	InvalidUnitDefId = _libsbml.InvalidUnitDefId
	InvalidUnitIdSyntax = _libsbml.InvalidUnitIdSyntax
	InvalidUnitKind = _libsbml.InvalidUnitKind
	InvalidVolumeRedefinition = _libsbml.InvalidVolumeRedefinition
	InvalidXMLConstruct = _libsbml.InvalidXMLConstruct
	KineticLawNotSubstancePerTime = _libsbml.KineticLawNotSubstancePerTime
	KineticLawParametersAreLocalOnly = _libsbml.KineticLawParametersAreLocalOnly
	L1V1CompartmentVolumeReqd = _libsbml.L1V1CompartmentVolumeReqd
	LambdaOnlyAllowedInFunctionDef = _libsbml.LambdaOnlyAllowedInFunctionDef
	LIBSBML_CAT_GENERAL_CONSISTENCY = _libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY
	LIBSBML_CAT_IDENTIFIER_CONSISTENCY = _libsbml.LIBSBML_CAT_IDENTIFIER_CONSISTENCY
	LIBSBML_CAT_INTERNAL = _libsbml.LIBSBML_CAT_INTERNAL
	LIBSBML_CAT_INTERNAL_CONSISTENCY = _libsbml.LIBSBML_CAT_INTERNAL_CONSISTENCY
	LIBSBML_CAT_MATHML_CONSISTENCY = _libsbml.LIBSBML_CAT_MATHML_CONSISTENCY
	LIBSBML_CAT_MODELING_PRACTICE = _libsbml.LIBSBML_CAT_MODELING_PRACTICE
	LIBSBML_CAT_OVERDETERMINED_MODEL = _libsbml.LIBSBML_CAT_OVERDETERMINED_MODEL
	LIBSBML_CAT_SBML = _libsbml.LIBSBML_CAT_SBML
	LIBSBML_CAT_SBML_L1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L1_COMPAT
	LIBSBML_CAT_SBML_L2V1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V1_COMPAT
	LIBSBML_CAT_SBML_L2V2_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V2_COMPAT
	LIBSBML_CAT_SBML_L2V3_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V3_COMPAT
	LIBSBML_CAT_SBML_L2V4_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V4_COMPAT
	LIBSBML_CAT_SBO_CONSISTENCY = _libsbml.LIBSBML_CAT_SBO_CONSISTENCY
	LIBSBML_CAT_SYSTEM = _libsbml.LIBSBML_CAT_SYSTEM
	LIBSBML_CAT_UNITS_CONSISTENCY = _libsbml.LIBSBML_CAT_UNITS_CONSISTENCY
	LIBSBML_CAT_XML = _libsbml.LIBSBML_CAT_XML
	LIBSBML_DOTTED_VERSION = _libsbml.LIBSBML_DOTTED_VERSION
	LIBSBML_DUPLICATE_OBJECT_ID = _libsbml.LIBSBML_DUPLICATE_OBJECT_ID
	LIBSBML_INDEX_EXCEEDS_SIZE = _libsbml.LIBSBML_INDEX_EXCEEDS_SIZE
	LIBSBML_INVALID_ATTRIBUTE_VALUE = _libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE
	LIBSBML_INVALID_OBJECT = _libsbml.LIBSBML_INVALID_OBJECT
	LIBSBML_INVALID_XML_OPERATION = _libsbml.LIBSBML_INVALID_XML_OPERATION
	LIBSBML_LEVEL_MISMATCH = _libsbml.LIBSBML_LEVEL_MISMATCH
	LIBSBML_OPERATION_FAILED = _libsbml.LIBSBML_OPERATION_FAILED
	LIBSBML_OPERATION_RETURN_VALUES_H = _libsbml.LIBSBML_OPERATION_RETURN_VALUES_H
	LIBSBML_OPERATION_SUCCESS = _libsbml.LIBSBML_OPERATION_SUCCESS
	LIBSBML_SEV_ERROR = _libsbml.LIBSBML_SEV_ERROR
	LIBSBML_SEV_FATAL = _libsbml.LIBSBML_SEV_FATAL
	LIBSBML_SEV_GENERAL_WARNING = _libsbml.LIBSBML_SEV_GENERAL_WARNING
	LIBSBML_SEV_INFO = _libsbml.LIBSBML_SEV_INFO
	LIBSBML_SEV_NOT_APPLICABLE = _libsbml.LIBSBML_SEV_NOT_APPLICABLE
	LIBSBML_SEV_SCHEMA_ERROR = _libsbml.LIBSBML_SEV_SCHEMA_ERROR
	LIBSBML_SEV_WARNING = _libsbml.LIBSBML_SEV_WARNING
	LIBSBML_UNEXPECTED_ATTRIBUTE = _libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE
	LIBSBML_VERSION = _libsbml.LIBSBML_VERSION
	LIBSBML_VERSION_MISMATCH = _libsbml.LIBSBML_VERSION_MISMATCH
	LIBSBML_VERSION_STRING = _libsbml.LIBSBML_VERSION_STRING
	LibSBMLAdditionalCodesLowerBound = _libsbml.LibSBMLAdditionalCodesLowerBound
	LocalParameterShadowsId = _libsbml.LocalParameterShadowsId
	MathCheckOFF = _libsbml.MathCheckOFF
	MathCheckON = _libsbml.MathCheckON
	MathResultMustBeNumeric = _libsbml.MathResultMustBeNumeric
	MetaIdNotValidAttribute = _libsbml.MetaIdNotValidAttribute
	MissingAnnotationNamespace = _libsbml.MissingAnnotationNamespace
	MissingEventAssignment = _libsbml.MissingEventAssignment
	MissingModel = _libsbml.MissingModel
	MissingOrInconsistentLevel = _libsbml.MissingOrInconsistentLevel
	MissingOrInconsistentVersion = _libsbml.MissingOrInconsistentVersion
	MissingSpeciesCompartment = _libsbml.MissingSpeciesCompartment
	MissingTriggerInEvent = _libsbml.MissingTriggerInEvent
	MissingXMLAttributeValue = _libsbml.MissingXMLAttributeValue
	MissingXMLDecl = _libsbml.MissingXMLDecl
	MissingXMLElements = _libsbml.MissingXMLElements
	MissingXMLEncoding = _libsbml.MissingXMLEncoding
	MissingXMLRequiredAttribute = _libsbml.MissingXMLRequiredAttribute
	MODEL_QUALIFIER = _libsbml.MODEL_QUALIFIER
	ModelSBOBranchChangedBeyondL2v2 = _libsbml.ModelSBOBranchChangedBeyondL2v2
	ModelSBOBranchChangedBeyondL2v3 = _libsbml.ModelSBOBranchChangedBeyondL2v3
	ModelSBOBranchChangedInL2v4 = _libsbml.ModelSBOBranchChangedInL2v4
	MultipleAssignmentOrRateRules = _libsbml.MultipleAssignmentOrRateRules
	MultipleEventAssignmentsForId = _libsbml.MultipleEventAssignmentsForId
	MultipleInitAssignments = _libsbml.MultipleInitAssignments
	MultiplierNotValidAttribute = _libsbml.MultiplierNotValidAttribute
	MultSpeciesSameTypeInCompartment = _libsbml.MultSpeciesSameTypeInCompartment
	NameNotValidAttribute = _libsbml.NameNotValidAttribute
	NeedCompartmentIfHaveSpecies = _libsbml.NeedCompartmentIfHaveSpecies
	NoCompartmentTypeInL1 = _libsbml.NoCompartmentTypeInL1
	NoCompartmentTypeInL2v1 = _libsbml.NoCompartmentTypeInL2v1
	NoConcentrationInZeroD = _libsbml.NoConcentrationInZeroD
	NoConstraintsInL1 = _libsbml.NoConstraintsInL1
	NoConstraintsInL2v1 = _libsbml.NoConstraintsInL2v1
	NoDelayedEventAssignmentInL2v1 = _libsbml.NoDelayedEventAssignmentInL2v1
	NoDelayedEventAssignmentInL2v2 = _libsbml.NoDelayedEventAssignmentInL2v2
	NoDelayedEventAssignmentInL2v3 = _libsbml.NoDelayedEventAssignmentInL2v3
	NoEventsInL1 = _libsbml.NoEventsInL1
	NoEventTimeUnitsInL2v3 = _libsbml.NoEventTimeUnitsInL2v3
	NoEventTimeUnitsInL2v4 = _libsbml.NoEventTimeUnitsInL2v4
	NoFancyStoichiometryMathInL1 = _libsbml.NoFancyStoichiometryMathInL1
	NoFunctionDefinitionsInL1 = _libsbml.NoFunctionDefinitionsInL1
	NoIdOnSpeciesReferenceInL2v1 = _libsbml.NoIdOnSpeciesReferenceInL2v1
	NoInitialAssignmentsInL1 = _libsbml.NoInitialAssignmentsInL1
	NoInitialAssignmentsInL2v1 = _libsbml.NoInitialAssignmentsInL2v1
	NoKineticLawSubstanceUnitsInL2v2 = _libsbml.NoKineticLawSubstanceUnitsInL2v2
	NoKineticLawSubstanceUnitsInL2v3 = _libsbml.NoKineticLawSubstanceUnitsInL2v3
	NoKineticLawSubstanceUnitsInL2v4 = _libsbml.NoKineticLawSubstanceUnitsInL2v4
	NoKineticLawTimeUnitsInL2v2 = _libsbml.NoKineticLawTimeUnitsInL2v2
	NoKineticLawTimeUnitsInL2v3 = _libsbml.NoKineticLawTimeUnitsInL2v3
	NoKineticLawTimeUnitsInL2v4 = _libsbml.NoKineticLawTimeUnitsInL2v4
	NonBoundarySpeciesAssignedAndUsed = _libsbml.NonBoundarySpeciesAssignedAndUsed
	NonConstantLocalParameter = _libsbml.NonConstantLocalParameter
	NonConstantSpeciesUsed = _libsbml.NonConstantSpeciesUsed
	NoNon3DComparmentsInL1 = _libsbml.NoNon3DComparmentsInL1
	NoNonIntegerStoichiometryInL1 = _libsbml.NoNonIntegerStoichiometryInL1
	NoReactantsOrProducts = _libsbml.NoReactantsOrProducts
	NoSBOTermsInL1 = _libsbml.NoSBOTermsInL1
	NoSBOTermsInL2v1 = _libsbml.NoSBOTermsInL2v1
	NoSpatialUnitsInZeroD = _libsbml.NoSpatialUnitsInZeroD
	NoSpeciesSpatialSizeUnitsInL1 = _libsbml.NoSpeciesSpatialSizeUnitsInL1
	NoSpeciesSpatialSizeUnitsInL2v3 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v3
	NoSpeciesSpatialSizeUnitsInL2v4 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v4
	NoSpeciesTypeInL2v1 = _libsbml.NoSpeciesTypeInL2v1
	NoSpeciesTypesInL1 = _libsbml.NoSpeciesTypesInL1
	NotesContainsDOCTYPE = _libsbml.NotesContainsDOCTYPE
	NotesContainsXMLDecl = _libsbml.NotesContainsXMLDecl
	NotesNotInXHTMLNamespace = _libsbml.NotesNotInXHTMLNamespace
	NoTimeSymbolInFunctionDef = _libsbml.NoTimeSymbolInFunctionDef
	NotSchemaConformant = _libsbml.NotSchemaConformant
	NotUTF8 = _libsbml.NotUTF8
	NoUnitMultipliersOrOffsetsInL1 = _libsbml.NoUnitMultipliersOrOffsetsInL1
	NoUnitOffsetInL2v2 = _libsbml.NoUnitOffsetInL2v2
	NoUnitOffsetInL2v3 = _libsbml.NoUnitOffsetInL2v3
	NoUnitOffsetInL2v4 = _libsbml.NoUnitOffsetInL2v4
	NumericOpsNeedNumericArgs = _libsbml.NumericOpsNeedNumericArgs
	ObseleteSBOTerm = _libsbml.ObseleteSBOTerm
	OffsetNoLongerValid = _libsbml.OffsetNoLongerValid
	OffsetNotValidAttribute = _libsbml.OffsetNotValidAttribute
	OpsNeedCorrectNumberOfArgs = _libsbml.OpsNeedCorrectNumberOfArgs
	OverdeterCheckOFF = _libsbml.OverdeterCheckOFF
	OverdeterCheckON = _libsbml.OverdeterCheckON
	OverdeterminedSystem = _libsbml.OverdeterminedSystem
	ParameterShouldHaveUnits = _libsbml.ParameterShouldHaveUnits
	PieceNeedsBoolean = _libsbml.PieceNeedsBoolean
	PiecewiseNeedsConsistentTypes = _libsbml.PiecewiseNeedsConsistentTypes
	PracticeCheckOFF = _libsbml.PracticeCheckOFF
	PracticeCheckON = _libsbml.PracticeCheckON
	RateRuleCompartmentMismatch = _libsbml.RateRuleCompartmentMismatch
	RateRuleForConstantEntity = _libsbml.RateRuleForConstantEntity
	RateRuleParameterMismatch = _libsbml.RateRuleParameterMismatch
	RateRuleSpeciesMismatch = _libsbml.RateRuleSpeciesMismatch
	RecursiveCompartmentContainment = _libsbml.RecursiveCompartmentContainment
	RecursiveFunctionDefinition = _libsbml.RecursiveFunctionDefinition
	RepeatedRule10304 = _libsbml.RepeatedRule10304
	RepeatedRule20611 = _libsbml.RepeatedRule20611
	RULE_TYPE_INVALID = _libsbml.RULE_TYPE_INVALID
	RULE_TYPE_RATE = _libsbml.RULE_TYPE_RATE
	RULE_TYPE_SCALAR = _libsbml.RULE_TYPE_SCALAR
	SBML_ALGEBRAIC_RULE = _libsbml.SBML_ALGEBRAIC_RULE
	SBML_ASSIGNMENT_RULE = _libsbml.SBML_ASSIGNMENT_RULE
	SBML_COMPARTMENT = _libsbml.SBML_COMPARTMENT
	SBML_COMPARTMENT_TYPE = _libsbml.SBML_COMPARTMENT_TYPE
	SBML_COMPARTMENT_VOLUME_RULE = _libsbml.SBML_COMPARTMENT_VOLUME_RULE
	SBML_CONSTRAINT = _libsbml.SBML_CONSTRAINT
	SBML_DEFAULT_LEVEL = _libsbml.SBML_DEFAULT_LEVEL
	SBML_DEFAULT_VERSION = _libsbml.SBML_DEFAULT_VERSION
	SBML_DELAY = _libsbml.SBML_DELAY
	SBML_DOCUMENT = _libsbml.SBML_DOCUMENT
	SBML_EVENT = _libsbml.SBML_EVENT
	SBML_EVENT_ASSIGNMENT = _libsbml.SBML_EVENT_ASSIGNMENT
	SBML_FORMULA_UNITS_DATA = _libsbml.SBML_FORMULA_UNITS_DATA
	SBML_FUNCTION_DEFINITION = _libsbml.SBML_FUNCTION_DEFINITION
	SBML_INITIAL_ASSIGNMENT = _libsbml.SBML_INITIAL_ASSIGNMENT
	SBML_KINETIC_LAW = _libsbml.SBML_KINETIC_LAW
	SBML_LIST_FORMULA_UNITS_DATA = _libsbml.SBML_LIST_FORMULA_UNITS_DATA
	SBML_LIST_OF = _libsbml.SBML_LIST_OF
	SBML_LISTOF_COMPARTMENT_TYPES = _libsbml.SBML_LISTOF_COMPARTMENT_TYPES
	SBML_LISTOF_COMPARTMENTS = _libsbml.SBML_LISTOF_COMPARTMENTS
	SBML_LISTOF_CONSTRAINTS = _libsbml.SBML_LISTOF_CONSTRAINTS
	SBML_LISTOF_EVENT_ASSIGNMENTS = _libsbml.SBML_LISTOF_EVENT_ASSIGNMENTS
	SBML_LISTOF_EVENTS = _libsbml.SBML_LISTOF_EVENTS
	SBML_LISTOF_FUNCTION_DEFINITIONS = _libsbml.SBML_LISTOF_FUNCTION_DEFINITIONS
	SBML_LISTOF_INITIAL_ASSIGNMENTS = _libsbml.SBML_LISTOF_INITIAL_ASSIGNMENTS
	SBML_LISTOF_PARAMETERS = _libsbml.SBML_LISTOF_PARAMETERS
	SBML_LISTOF_REACTIONS = _libsbml.SBML_LISTOF_REACTIONS
	SBML_LISTOF_RULES = _libsbml.SBML_LISTOF_RULES
	SBML_LISTOF_SPECIES = _libsbml.SBML_LISTOF_SPECIES
	SBML_LISTOF_SPECIES_REFERENCES = _libsbml.SBML_LISTOF_SPECIES_REFERENCES
	SBML_LISTOF_SPECIES_TYPES = _libsbml.SBML_LISTOF_SPECIES_TYPES
	SBML_LISTOF_UNIT_DEFINITIONS = _libsbml.SBML_LISTOF_UNIT_DEFINITIONS
	SBML_LISTOF_UNITS = _libsbml.SBML_LISTOF_UNITS
	SBML_MODEL = _libsbml.SBML_MODEL
	SBML_MODIFIER_SPECIES_REFERENCE = _libsbml.SBML_MODIFIER_SPECIES_REFERENCE
	SBML_PARAMETER = _libsbml.SBML_PARAMETER
	SBML_PARAMETER_RULE = _libsbml.SBML_PARAMETER_RULE
	SBML_RATE_RULE = _libsbml.SBML_RATE_RULE
	SBML_REACTION = _libsbml.SBML_REACTION
	SBML_RULE = _libsbml.SBML_RULE
	SBML_SPECIES = _libsbml.SBML_SPECIES
	SBML_SPECIES_CONCENTRATION_RULE = _libsbml.SBML_SPECIES_CONCENTRATION_RULE
	SBML_SPECIES_REFERENCE = _libsbml.SBML_SPECIES_REFERENCE
	SBML_SPECIES_TYPE = _libsbml.SBML_SPECIES_TYPE
	SBML_STOICHIOMETRY_MATH = _libsbml.SBML_STOICHIOMETRY_MATH
	SBML_TRIGGER = _libsbml.SBML_TRIGGER
	SBML_UNIT = _libsbml.SBML_UNIT
	SBML_UNIT_DEFINITION = _libsbml.SBML_UNIT_DEFINITION
	SBML_UNKNOWN = _libsbml.SBML_UNKNOWN
	SBML_XMLNS_L1 = _libsbml.SBML_XMLNS_L1
	SBML_XMLNS_L2V1 = _libsbml.SBML_XMLNS_L2V1
	SBML_XMLNS_L2V2 = _libsbml.SBML_XMLNS_L2V2
	SBML_XMLNS_L2V3 = _libsbml.SBML_XMLNS_L2V3
	SBML_XMLNS_L2V4 = _libsbml.SBML_XMLNS_L2V4
	SBMLCheckOFF = _libsbml.SBMLCheckOFF
	SBMLCheckON = _libsbml.SBMLCheckON
	SBMLCodesUpperBound = _libsbml.SBMLCodesUpperBound
	SBMLNamespaceInAnnotation = _libsbml.SBMLNamespaceInAnnotation
	SBOCheckOFF = _libsbml.SBOCheckOFF
	SBOCheckON = _libsbml.SBOCheckON
	SBOTermNotUniversalInL2v2 = _libsbml.SBOTermNotUniversalInL2v2
	SBOTermNotValidAttributeBeforeL2V2 = _libsbml.SBOTermNotValidAttributeBeforeL2V2
	SBOTermNotValidAttributeBeforeL2V3 = _libsbml.SBOTermNotValidAttributeBeforeL2V3
	SpatialSizeUnitsNotValidAttribute = _libsbml.SpatialSizeUnitsNotValidAttribute
	SpatialSizeUnitsRemoved = _libsbml.SpatialSizeUnitsRemoved
	SpatialUnitsInOneD = _libsbml.SpatialUnitsInOneD
	SpatialUnitsInThreeD = _libsbml.SpatialUnitsInThreeD
	SpatialUnitsInTwoD = _libsbml.SpatialUnitsInTwoD
	SpeciesCompartmentRequiredInL1 = _libsbml.SpeciesCompartmentRequiredInL1
	SpeciesTypeNotValidAttribute = _libsbml.SpeciesTypeNotValidAttribute
	SpeciesTypeNotValidComponent = _libsbml.SpeciesTypeNotValidComponent
	StoichiometryMathNotValidComponent = _libsbml.StoichiometryMathNotValidComponent
	StrictSBORequiredInL2v2 = _libsbml.StrictSBORequiredInL2v2
	StrictSBORequiredInL2v3 = _libsbml.StrictSBORequiredInL2v3
	StrictUnitsRequiredInL1 = _libsbml.StrictUnitsRequiredInL1
	StrictUnitsRequiredInL2v1 = _libsbml.StrictUnitsRequiredInL2v1
	StrictUnitsRequiredInL2v2 = _libsbml.StrictUnitsRequiredInL2v2
	StrictUnitsRequiredInL2v3 = _libsbml.StrictUnitsRequiredInL2v3
	SubsUnitsAllowedInKL = _libsbml.SubsUnitsAllowedInKL
	SubsUnitsNoLongerValid = _libsbml.SubsUnitsNoLongerValid
	TimeUnitsAllowedInKL = _libsbml.TimeUnitsAllowedInKL
	TimeUnitsEvent = _libsbml.TimeUnitsEvent
	TimeUnitsNoLongerValid = _libsbml.TimeUnitsNoLongerValid
	TimeUnitsRemoved = _libsbml.TimeUnitsRemoved
	TriggerMathNotBoolean = _libsbml.TriggerMathNotBoolean
	UnclosedXMLToken = _libsbml.UnclosedXMLToken
	UndeclaredSpeciesInStoichMath = _libsbml.UndeclaredSpeciesInStoichMath
	UndeclaredSpeciesRef = _libsbml.UndeclaredSpeciesRef
	UndeclaredUnits = _libsbml.UndeclaredUnits
	UndefinedOutsideCompartment = _libsbml.UndefinedOutsideCompartment
	UndefinedXMLEntity = _libsbml.UndefinedXMLEntity
	UninterpretableXMLContent = _libsbml.UninterpretableXMLContent
	UNIT_KIND_AMPERE = _libsbml.UNIT_KIND_AMPERE
	UNIT_KIND_BECQUEREL = _libsbml.UNIT_KIND_BECQUEREL
	UNIT_KIND_CANDELA = _libsbml.UNIT_KIND_CANDELA
	UNIT_KIND_CELSIUS = _libsbml.UNIT_KIND_CELSIUS
	UNIT_KIND_COULOMB = _libsbml.UNIT_KIND_COULOMB
	UNIT_KIND_DIMENSIONLESS = _libsbml.UNIT_KIND_DIMENSIONLESS
	UNIT_KIND_FARAD = _libsbml.UNIT_KIND_FARAD
	UNIT_KIND_GRAM = _libsbml.UNIT_KIND_GRAM
	UNIT_KIND_GRAY = _libsbml.UNIT_KIND_GRAY
	UNIT_KIND_HENRY = _libsbml.UNIT_KIND_HENRY
	UNIT_KIND_HERTZ = _libsbml.UNIT_KIND_HERTZ
	UNIT_KIND_INVALID = _libsbml.UNIT_KIND_INVALID
	UNIT_KIND_ITEM = _libsbml.UNIT_KIND_ITEM
	UNIT_KIND_JOULE = _libsbml.UNIT_KIND_JOULE
	UNIT_KIND_KATAL = _libsbml.UNIT_KIND_KATAL
	UNIT_KIND_KELVIN = _libsbml.UNIT_KIND_KELVIN
	UNIT_KIND_KILOGRAM = _libsbml.UNIT_KIND_KILOGRAM
	UNIT_KIND_LITER = _libsbml.UNIT_KIND_LITER
	UNIT_KIND_LITRE = _libsbml.UNIT_KIND_LITRE
	UNIT_KIND_LUMEN = _libsbml.UNIT_KIND_LUMEN
	UNIT_KIND_LUX = _libsbml.UNIT_KIND_LUX
	UNIT_KIND_METER = _libsbml.UNIT_KIND_METER
	UNIT_KIND_METRE = _libsbml.UNIT_KIND_METRE
	UNIT_KIND_MOLE = _libsbml.UNIT_KIND_MOLE
	UNIT_KIND_NEWTON = _libsbml.UNIT_KIND_NEWTON
	UNIT_KIND_OHM = _libsbml.UNIT_KIND_OHM
	UNIT_KIND_PASCAL = _libsbml.UNIT_KIND_PASCAL
	UNIT_KIND_RADIAN = _libsbml.UNIT_KIND_RADIAN
	UNIT_KIND_SECOND = _libsbml.UNIT_KIND_SECOND
	UNIT_KIND_SIEMENS = _libsbml.UNIT_KIND_SIEMENS
	UNIT_KIND_SIEVERT = _libsbml.UNIT_KIND_SIEVERT
	UNIT_KIND_STERADIAN = _libsbml.UNIT_KIND_STERADIAN
	UNIT_KIND_TESLA = _libsbml.UNIT_KIND_TESLA
	UNIT_KIND_VOLT = _libsbml.UNIT_KIND_VOLT
	UNIT_KIND_WATT = _libsbml.UNIT_KIND_WATT
	UNIT_KIND_WEBER = _libsbml.UNIT_KIND_WEBER
	UnitsCheckOFF = _libsbml.UnitsCheckOFF
	UnitsCheckON = _libsbml.UnitsCheckON
	UnitsNotValidAttribute = _libsbml.UnitsNotValidAttribute
	UNKNOWN_QUALIFIER = _libsbml.UNKNOWN_QUALIFIER
	UnknownError = _libsbml.UnknownError
	UnrecognisedSBOTerm = _libsbml.UnrecognisedSBOTerm
	UnrecognizedElement = _libsbml.UnrecognizedElement
	UnrecognizedXMLElement = _libsbml.UnrecognizedXMLElement
	UnrecognizedXMLParserCode = _libsbml.UnrecognizedXMLParserCode
	ValuesFromTriggerTimeNeedDelay = _libsbml.ValuesFromTriggerTimeNeedDelay
	VariableNotValidAttribute = _libsbml.VariableNotValidAttribute
	VolumeLitreDefExponentNotOne = _libsbml.VolumeLitreDefExponentNotOne
	VolumeMetreDefExponentNot3 = _libsbml.VolumeMetreDefExponentNot3
	XMLAttributeTypeMismatch = _libsbml.XMLAttributeTypeMismatch
	XMLBadColon = _libsbml.XMLBadColon
	XMLBadNumber = _libsbml.XMLBadNumber
	XMLBadUTF8Content = _libsbml.XMLBadUTF8Content
	XMLContentEmpty = _libsbml.XMLContentEmpty
	XMLEmptyValueNotPermitted = _libsbml.XMLEmptyValueNotPermitted
	XMLErrorCodesUpperBound = _libsbml.XMLErrorCodesUpperBound
	XMLExpectedQuotedString = _libsbml.XMLExpectedQuotedString
	XMLFileOperationError = _libsbml.XMLFileOperationError
	XMLFileUnreadable = _libsbml.XMLFileUnreadable
	XMLFileUnwritable = _libsbml.XMLFileUnwritable
	XMLNetworkAccessError = _libsbml.XMLNetworkAccessError
	XMLOutOfMemory = _libsbml.XMLOutOfMemory
	XMLTagMismatch = _libsbml.XMLTagMismatch
	XMLTranscoderError = _libsbml.XMLTranscoderError
	XMLUnexpectedEOF = _libsbml.XMLUnexpectedEOF
	XMLUnknownError = _libsbml.XMLUnknownError
	ZeroDCompartmentContainment = _libsbml.ZeroDCompartmentContainment
	ZeroDimensionalCompartmentConst = _libsbml.ZeroDimensionalCompartmentConst
	ZeroDimensionalCompartmentSize = _libsbml.ZeroDimensionalCompartmentSize
	ZeroDimensionalCompartmentUnits = _libsbml.ZeroDimensionalCompartmentUnits

Function Documentation

def libsbml.ASTNode_true ( args )

Python method signature(s):

ASTNode_true(ASTNode node)    int

Definition at line 684 of file libsbml.py.

def libsbml.conditional_abspath ( filename )

conditional_abspath (filename) filename

Returns filename with an absolute path prepended, if necessary. Some combinations of platforms and underlying XML parsers *require* an absolute path to a filename while others do not. This function encapsulates the appropriate logic. It is used by readSBML() and SBMLReader.readSBML().

Definition at line 650 of file libsbml.py.

def libsbml.endl ( args )

Python method signature(s):

endl(ostream arg0)    ostream

Definition at line 637 of file libsbml.py.

def libsbml.flush ( args )

Python method signature(s):

flush(ostream arg0)    ostream

Definition at line 642 of file libsbml.py.

def libsbml.formulaToString ( args )

Python method signature(s):

formulaToString(ASTNode_t tree)    char

Converts an ASTNode formula to a text string using a specific syntax for mathematical formulas.

Parameters:

tree

the root of the ASTNode formula expression tree

Returns:: the formula from the given AST as an SBML Level 1 text-string mathematical formula. The caller owns the returned string and is responsible for freeing it when it is no longer needed. NULL is returned if the given argument is NULL.

Definition at line 26880 of file libsbml.py.

def libsbml.getLibSBMLDottedVersion ( )

Python method signature(s):

getLibSBMLDottedVersion()    char

Returns the libSBML version as a string of the form '1.2.3'.

Returns:: the libSBML version as a string of the form '1.2.3'.

Definition at line 707 of file libsbml.py.

def libsbml.getLibSBMLVersion ( )

Python method signature(s):

getLibSBMLVersion()    int

Returns the libSBML version as an integer: version 1.2.3 becomes 10203.

Returns:: the libSBML version as an integer: version 1.2.3 becomes 10203.

Definition at line 692 of file libsbml.py.

def libsbml.getLibSBMLVersionString ( )

Python method signature(s):

getLibSBMLVersionString()    char

Returns the libSBML version as a string: version 1.2.3 becomes '10203'.

Returns:: the libSBML version as a string: version 1.2.3 becomes '10203'.

Definition at line 722 of file libsbml.py.

def libsbml.parseFormula ( args )

Python method signature(s):

parseFormula(char formula)    ASTNode_t

Parses a text-string mathematical formula and returns a representation as an Abstract Syntax Tree.

Parameters:

formula

the string containing the mathematical formula.

Returns:: an ASTNode (the root of the expression tree). If the formula contains a grammatical error, NULL is returned.

Definition at line 26845 of file libsbml.py.

def libsbml.RDFAnnotationParser_createAnnotation ( )

Python method signature(s):

RDFAnnotationParser_createAnnotation()    XMLNode

Creates a blank annotation and returns the XMLNode corresonding to it.

The annotation created by this method is a completely empty SBML <annotation> element. One use for this is to then call createRDFAnnotation() to construct RDF content for this empty annotation.

Returns:: a pointer to an XMLNode for the annotation

See also:: createRDFAnnotation()

Definition at line 33314 of file libsbml.py.

def libsbml.RDFAnnotationParser_createCVTerms ( args )

Python method signature(s):

RDFAnnotationParser_createCVTerms(SBase object)    XMLNode

Takes a list of CVTerms and creates a the RDF 'Description' element.

This essentially takes the given SBML object, reads out the CVTerms attached to it, calls createRDFDescriptiom() to create an RDF 'Description' element to hold the terms and adds each term with appropriate qualifiers.

Parameters:

object

the SBML object to start from

Returns:: the XMLNode tree corresponding to the Description element of an RDF annotation.

Definition at line 33408 of file libsbml.py.

def libsbml.RDFAnnotationParser_createRDFAnnotation ( )

Python method signature(s):

RDFAnnotationParser_createRDFAnnotation()    XMLNode

Creates blank RDF annotation content organized in the form defined in Section 6 of the SBML Level 2 Version 4 specification .

The annotation created by this method has namespace declarations for all the relevant XML namespaces used in RDF annotations and also has an empty RDF element. Note that this is not the containing <annotation> element; the method createAnnotation() is available for that purpose.

Returns:: a pointer to an XMLNode

Definition at line 33336 of file libsbml.py.

def libsbml.RDFAnnotationParser_createRDFDescription ( args )

Python method signature(s):

RDFAnnotationParser_createRDFDescription(SBase object)    XMLNode

Takes an SBML object and creates an XMLNode corresponding to an RDF 'Description' element.

This method is a handy way of creating RDF description objects linked by the appropriate 'metaid' field, for insertion into RDF annotations in a model. (Note that this method does not create a complete annotation; it only creates a description element. For creating empty RDF annotations that can serve as containers for RDF descriptions, see createRDFAnnotation().

Parameters:

object

the object to be annotated

Returns:: a new XMLNode containing the 'rdf:about' structure for an RDF 'Description' element.

See also:: createRDFAnnotation()

Definition at line 33380 of file libsbml.py.

def libsbml.RDFAnnotationParser_deleteRDFAnnotation ( args )

Python method signature(s):

RDFAnnotationParser_deleteRDFAnnotation(XMLNode annotation)    XMLNode

Deletes any RDF annotation found in the given XMLNode tree and returns any remaining annotation content.

The name of the given XMLNode must be 'annotation', or else this method returns NULL.

Parameters:

annotation

the annotation tree within which the RDF annotation is to be found and deleted

Returns:: the XMLNode structure with any RDF annotations deleted

Definition at line 33358 of file libsbml.py.

def libsbml.RDFAnnotationParser_parseCVTerms ( args )

Python method signature(s):

RDFAnnotationParser_parseCVTerms(SBase object)    XMLNode

Takes a list of CVTerms and creates a complete SBML annotation around it.

This essentially takes the given SBML object, calls createCVTerms to read out the CVTerms attached to it, calls createRDFAnnotation() to create an RDF annotation to hold the terms, and finally calls createAnnotation() to wrap the result as an SBML <annotation> element.

Parameters:

object

the SBML object to start from

Returns:: the XMLNode tree corresponding to the annotation.

Definition at line 33431 of file libsbml.py.

def libsbml.RDFAnnotationParser_parseModelHistory ( args )

Python method signature(s):

RDFAnnotationParser_parseModelHistory(Model object)    XMLNode

Takes an SBML Model object, reads off the model history information stored in it, and creates a complete SBML annotation to store that history.

Parameters:

object

a Model

Returns:: the XMLNode corresponding to an annotation containing MIRIAM-compliant model history information in RDF format

Definition at line 33455 of file libsbml.py.

def libsbml.RDFAnnotationParser_parseRDFAnnotation ( args )

Python method signature(s):

parseRDFAnnotation(XMLNode annotation)    ModelHistory
  RDFAnnotationParser_parseRDFAnnotation(XMLNode annotation, CVTermList CVTerms)

Parses an annotation into a ModelHistory class instance.

This is used to take an annotation that has been read into an SBML model, identify the RDF elements representing model history information, and create a list of corresponding CVTerms.

Parameters:

annotation

XMLNode containing the annotation.

Returns:: a pointer to the ModelHistory created.

Definition at line 33475 of file libsbml.py.

def libsbml.readMathMLFromString ( args )

Python method signature(s):

readMathMLFromString(char xml)    ASTNode_t

Reads the MathML from the given XML string, constructs a corresponding abstract syntax tree, and returns a pointer to the root of the tree.

Parameters:

xml

a string containing a full MathML expression

Returns:: the root of an AST corresponding to the given mathematical expression, otherwise NULL is returned if the given string is NULL or invalid.

Definition at line 25373 of file libsbml.py.

def libsbml.readSBML ( args )

Python method signature(s):

readSBML(filename)    SBMLDocument

Reads an SBML document from the given file. If filename does not exist or is not an SBML file, a fatal error will be logged. Errors can be identified by their unique ids, e.g.:

d = readSBML(filename)

if d.getNumErrors() > 0: pm = d.getError(0) if pm.getErrorId() == libsbml.XMLFileUnreadable if pm.getErrorId() == libsbml.XMLTagMismatch:

Definition at line 664 of file libsbml.py.

def libsbml.readSBMLFromFile ( args )

Python method signature(s):

readSBMLFromFile(char filename)    SBMLDocument_t

Reads an SBML document from the given file filename.

If filename does not exist, or it is not an SBML file, an error will be logged in the error log of the SBMLDocument object returned by this method. Calling programs can inspect this error log to determine the nature of the problem. Please refer to the definition of SBMLDocument for more information about the error reporting mechanism.

Returns:: a pointer to the SBMLDocument read.

Definition at line 1027 of file libsbml.py.

def libsbml.readSBMLFromString ( args )

Python method signature(s):

readSBMLFromString(char xml)    SBMLDocument_t

Reads an SBML document from a string assumed to be in XML format.

If the string does not begin with XML declaration,

   <?xml version='1.0' encoding='UTF-8'?>

an XML declaration string will be prepended.

This method will report an error if the given string xml is not SBML. The error will be logged in the error log of the SBMLDocument object returned by this method. Calling programs can inspect this error log to determine the nature of the problem. Please refer to the definition of SBMLDocument for more information about the error reporting mechanism.

Returns:: a pointer to the SBMLDocument read.

Definition at line 1048 of file libsbml.py.

def libsbml.SBMLDocument_getDefaultLevel ( )

Python method signature(s):

SBMLDocument_getDefaultLevel()    unsigned int

The default SBML Level of new SBMLDocument objects.

This 'default level' corresponds to the most recent SBML specification Level available at the time this version of libSBML was released. For this copy of libSBML, the value is 2. The default Level is used by SBMLDocument if no Level is explicitly specified at the time of the construction of an SBMLDocument instance.

Returns:: an integer indicating the most recent SBML specification Level

See also:: getDefaultVersion()

Definition at line 7024 of file libsbml.py.

def libsbml.SBMLDocument_getDefaultVersion ( )

Python method signature(s):

SBMLDocument_getDefaultVersion()    unsigned int

The default Version of new SBMLDocument objects.

This 'default version' corresponds to the most recent SBML Version within the most recent Level of SBML available at the time this version of libSBML was released. For this copy of libSBML, the value is 4. The default Version is used by SBMLDocument if no Version is explicitly specified at the time of the construction of an SBMLDocument instance.

Returns:: an integer indicating the most recent SBML specification Version

See also:: getDefaultLevel()

Definition at line 7047 of file libsbml.py.

def libsbml.SBMLNamespaces_getSBMLNamespaceURI ( args )

Python method signature(s):

SBMLNamespaces_getSBMLNamespaceURI(unsigned int level, unsigned int version)    string

Returns a string representing the SBML XML namespace for the given level and version of SBML.

Parameters:

	level	the SBML level
	version	the SBML version

Returns:: a string representing the SBML namespace that reflects the SBML Level and Version specified.

Definition at line 25352 of file libsbml.py.

def libsbml.SBMLReader_hasBzip2 ( )

Python method signature(s):

SBMLReader_hasBzip2()    bool

Predicate returning true or false depending on whether libSBML is linked with bzip2 at compile time.

Returns:: true if bzip2 is linked, false otherwise.

Definition at line 1010 of file libsbml.py.

def libsbml.SBMLReader_hasZlib ( )

Python method signature(s):

SBMLReader_hasZlib()    bool

Predicate returning true or false depending on whether libSBML is linked with zlib at compile time.

Returns:: true if zlib is linked, false otherwise.

Definition at line 994 of file libsbml.py.

def libsbml.SBMLTypeCode_toString ( args )

Python method signature(s):

SBMLTypeCode_toString(SBMLTypeCode_t tc)    char

This method takes an SBML type code and returns a string representing the code.

This method takes a type code as argument, and returns a string name corresponding to that code. For example, passing it the type code SBML_COMPARTMENT will return the string 'Compartment'.

Returns:: a human readable name for the given SBMLTypeCode_t.

Note:: The caller does not own the returned string and is therefore not allowed to modify it.

Definition at line 1417 of file libsbml.py.

def libsbml.SBMLWriter_hasBzip2 ( )

Python method signature(s):

SBMLWriter_hasBzip2()    bool

Predicate returning true or false depending on whether underlying libSBML is linked with bzip2.

LibSBML supports reading and writing files compressed with either bzip2 or zip/gzip compression. The facility depends on libSBML having been compiled with the necessary support libraries. This method allows a calling program to inquire whether that is the case for the copy of libSBML it is running.

Returns:: true if libSBML is linked with bzip2, false otherwise.

Deprecated:: libSBML internal

Definition at line 1306 of file libsbml.py.

def libsbml.SBMLWriter_hasZlib ( )

Python method signature(s):

SBMLWriter_hasZlib()    bool

Predicate returning true or false depending on whether underlying libSBML is linked with zlib.

LibSBML supports reading and writing files compressed with either bzip2 or zip/gzip compression. The facility depends on libSBML having been compiled with the necessary support libraries. This method allows a calling program to inquire whether that is the case for the copy of libSBML it is running.

Returns:: true if libSBML is linked with zlib, false otherwise.

Definition at line 1284 of file libsbml.py.

def libsbml.SBO_checkTerm ( args )

Python method signature(s):

checkTerm(string sboTerm)    bool
  SBO_checkTerm(int sboTerm)    bool

Checks the format of the given SBO integer portion.

Returns:: true if sboTerm is in the range [0 -- 9999999], false otherwise.

Definition at line 24559 of file libsbml.py.

def libsbml.SBO_intToString ( args )

Python method signature(s):

SBO_intToString(int sboTerm)    string

Returns the integer as a correctly formatted SBO string.

Returns:: the given integer sboTerm as a zero-padded seven digit string.

Note:: If the sboTerm is not in the correct range ([0 -- 9999999]), an empty string is returned.

Definition at line 24524 of file libsbml.py.

def libsbml.SBO_isConservationLaw ( args )

Python method signature(s):

SBO_isConservationLaw(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a ConservationLaw, false otherwise

Definition at line 24419 of file libsbml.py.

def libsbml.SBO_isContinuousFramework ( args )

Python method signature(s):

SBO_isContinuousFramework(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a ContinuousFramework, false otherwise

Definition at line 24464 of file libsbml.py.

def libsbml.SBO_isDiscreteFramework ( args )

Python method signature(s):

SBO_isDiscreteFramework(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a DiscreteFramework, false otherwise

Definition at line 24479 of file libsbml.py.

def libsbml.SBO_isEntity ( args )

Python method signature(s):

SBO_isEntity(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a Entity, false otherwise

Definition at line 24374 of file libsbml.py.

def libsbml.SBO_isEvent ( args )

Python method signature(s):

SBO_isEvent(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a Event, false otherwise

Definition at line 24314 of file libsbml.py.

def libsbml.SBO_isFunctionalCompartment ( args )

Python method signature(s):

SBO_isFunctionalCompartment(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a FunctionalCompartment, false otherwise

Definition at line 24449 of file libsbml.py.

def libsbml.SBO_isFunctionalEntity ( args )

Python method signature(s):

SBO_isFunctionalEntity(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a FunctionalEntity, false otherwise

Definition at line 24389 of file libsbml.py.

def libsbml.SBO_isInteraction ( args )

Python method signature(s):

SBO_isInteraction(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a Interaction, false otherwise

Definition at line 24359 of file libsbml.py.

def libsbml.SBO_isKineticConstant ( args )

Python method signature(s):

SBO_isKineticConstant(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a KineticConstant, false otherwise

Definition at line 24239 of file libsbml.py.

def libsbml.SBO_isLogicalFramework ( args )

Python method signature(s):

SBO_isLogicalFramework(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a LogicalFramework, false otherwise

Definition at line 24494 of file libsbml.py.

def libsbml.SBO_isMaterialEntity ( args )

Python method signature(s):

SBO_isMaterialEntity(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a MaterialEntity, false otherwise

Definition at line 24404 of file libsbml.py.

def libsbml.SBO_isMathematicalExpression ( args )

Python method signature(s):

SBO_isMathematicalExpression(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a MathematicalExpression, false otherwise

Definition at line 24224 of file libsbml.py.

def libsbml.SBO_isModellingFramework ( args )

Python method signature(s):

SBO_isModellingFramework(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a ModellingFramework, false otherwise

Definition at line 24209 of file libsbml.py.

def libsbml.SBO_isModifier ( args )

Python method signature(s):

SBO_isModifier(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a Modifier, false otherwise

Definition at line 24284 of file libsbml.py.

def libsbml.SBO_isObselete ( args )

Python method signature(s):

SBO_isObselete(unsigned int term)    bool

Function for checking whether the SBO term is obselete.

Returns:: true if the term is-a Obsolete, false otherwise

Definition at line 24509 of file libsbml.py.

def libsbml.SBO_isParticipant ( args )

Python method signature(s):

SBO_isParticipant(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a Participant, false otherwise

Definition at line 24344 of file libsbml.py.

def libsbml.SBO_isParticipantRole ( args )

Python method signature(s):

SBO_isParticipantRole(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a ParticipantRole, false otherwise

Definition at line 24194 of file libsbml.py.

def libsbml.SBO_isPhysicalParticipant ( args )

Python method signature(s):

SBO_isPhysicalParticipant(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a PhysicalParticipant, false otherwise

Definition at line 24329 of file libsbml.py.

def libsbml.SBO_isProduct ( args )

Python method signature(s):

SBO_isProduct(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a Product, false otherwise

Definition at line 24269 of file libsbml.py.

def libsbml.SBO_isQuantitativeParameter ( args )

Python method signature(s):

SBO_isQuantitativeParameter(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a QuantitativeParameter, false otherwise

Definition at line 24179 of file libsbml.py.

def libsbml.SBO_isRateLaw ( args )

Python method signature(s):

SBO_isRateLaw(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a RateLaw, false otherwise

Definition at line 24299 of file libsbml.py.

def libsbml.SBO_isReactant ( args )

Python method signature(s):

SBO_isReactant(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a Reactant, false otherwise

Definition at line 24254 of file libsbml.py.

def libsbml.SBO_isSteadyStateExpression ( args )

Python method signature(s):

SBO_isSteadyStateExpression(unsigned int term)    bool

Function for checking the SBO term is from correct part of SBO.

Returns:: true if the term is-a SteadyStateExpression, false otherwise

Definition at line 24434 of file libsbml.py.

def libsbml.SBO_stringToInt ( args )

Python method signature(s):

SBO_stringToInt(string sboTerm)    int

Returns the string as a correctly formatted SBO integer portion.

Returns:: the given string sboTerm as an integer. If the sboTerm is not in the correct format (a zero-padded, seven digit string), -1 is returned.

Definition at line 24542 of file libsbml.py.

def libsbml.swig_import_helper ( )

Definition at line 11 of file libsbml.py.

def libsbml.SyntaxChecker_hasExpectedXHTMLSyntax ( args )

Python method signature(s):

hasExpectedXHTMLSyntax(XMLNode xhtml, SBMLNamespaces sbmlns = None)    bool
  SyntaxChecker_hasExpectedXHTMLSyntax(XMLNode xhtml)    bool

Predicate returning true or false depending on whether the argument XMLNode represents XHTML that conforms to the requirements of the SBML specification.

Parameters:

	xhtml	the XMLNode to be checked for conformance.
	sbmlns	the SBMLNamespaces associated with the object.

Returns:: true if the XMLNode conforms, false otherwise.

Note:: the optional SBMLNamespaces argument can be used to check for the declaration of the XHTML namespace at the top-level within an SBMLDocument.

Definition at line 24785 of file libsbml.py.

def libsbml.SyntaxChecker_isValidSBMLSId ( args )

Python method signature(s):

SyntaxChecker_isValidSBMLSId(string sid)    bool

Predicate returning true or false depending on whether the argument string conforms to the SBML type SId.

Parameters:

sid

string to be checked for conformance

Returns:: true if the string conforms to type SId, false otherwise.

Note:: The literal representation of SBML type SId consists of strings of characters restricted to:

letter ::= 'a'..'z','A'..'Z'
digit ::= '0'..'9'
idChar ::= letter | digit | '_'
SId ::= ( letter | '_' ) idChar*

Definition at line 24708 of file libsbml.py.

def libsbml.SyntaxChecker_isValidUnitSId ( args )

Python method signature(s):

SyntaxChecker_isValidUnitSId(string units)    bool

Predicate returning true or false depending on whether the argument string conforms to the SBML type UnitSId.

Parameters:

units

string to be checked for conformance

Returns:: true if the string conforms to type UnitSId, false otherwise.

Note:: The literal representation of SBML type UniySId consists of strings of characters restricted to:

letter ::= 'a'..'z','A'..'Z'
digit ::= '0'..'9'
idChar ::= letter | digit | '_'
UnitSId ::= ( letter | '_' ) idChar*

Definition at line 24758 of file libsbml.py.

def libsbml.SyntaxChecker_isValidXMLID ( args )

Python method signature(s):

SyntaxChecker_isValidXMLID(string id)    bool

Predicate returning true or false depending on whether the argument string conforms to the XML 1.0 type ID.

Parameters:

id

string to be checked for conformance

Returns:: true if the string conforms to type ID, false otherwise.

Note:: The literal representation of XML 1.0 type ID consists of strings of characters restricted to:

NCNameChar ::= letter | digit | '.' | '-' | '_' | ':' | CombiningChar | Extender
ID ::= ( letter | '_' | ':' ) NCNameChar*

Definition at line 24734 of file libsbml.py.

def libsbml.Unit_areEquivalent ( args )

Python method signature(s):

Unit_areEquivalent(Unit unit1, Unit unit2)    bool

Predicate returning true or false depending on whether Unit objects are equivalent.

Two Unit objects are considered to be equivalent if their 'kind' and 'exponent' attributes are equal. (Contrast this to the method Unit.areIdentical(Unit * unit1, Unit * unit2), which compares Unit objects with respect to all attributes, not just the kind and exponent.)

Parameters:

	unit1	the first Unit object to compare
	unit2	the second Unit object to compare

Returns:: true if the 'kind' and 'exponent' attributes of unit1 are identical to the kind and exponent attributes of unit2, false otherwise.

See also:: areIdentical(Unit * unit1, Unit * unit2)

Definition at line 9184 of file libsbml.py.

def libsbml.Unit_areIdentical ( args )

Python method signature(s):

Unit_areIdentical(Unit unit1, Unit unit2)    bool

Predicate returning true or false depending on whether two Unit objects are identical.

Two Unit objects are considered to be identical if they match in all attributes. (Contrast this to the method Unit.areEquivalent(Unit * unit1, Unit * unit2), which compares Unit objects only with respect to certain attributes.)

Parameters:

	unit1	the first Unit object to compare
	unit2	the second Unit object to compare

Returns:: true if all the attributes of unit1 are identical to the attributes of unit2, false otherwise.

See also:: areEquivalent(Unit * unit1, Unit * unit2)

Definition at line 9157 of file libsbml.py.

def libsbml.Unit_convertToSI ( args )

Python method signature(s):

Unit_convertToSI(Unit unit)    UnitDefinition

Returns a UnitDefinition object which contains the argument Unit converted to the appropriate SI unit.

Parameters:

unit

the Unit object to convert to SI

Returns:: a UnitDefinition object containing the SI unit.

Definition at line 9269 of file libsbml.py.

def libsbml.Unit_isBuiltIn ( args )

Python method signature(s):

Unit_isBuiltIn(string name, unsigned int level)    bool

Predicate to test whether a given string is the name of a predefined SBML unit.

Parameters:

	name	a string to be tested against the predefined unit names
	level	the Level of SBML for which the determination should be made. This is necessary because there are a few small differences in allowed units between SBML Level 1 and Level 2.

Returns:: true if name is one of the five SBML predefined unit identifiers ('substance', 'volume', 'area', 'length' or 'time'), false otherwise.

Note:: The predefined unit identifiers 'length' and 'area' were added in Level 2 Version 1

Definition at line 9093 of file libsbml.py.

def libsbml.Unit_isUnitKind ( args )

Python method signature(s):

Unit_isUnitKind(string name, unsigned int level, unsigned int version)    bool

Predicate to test whether a given string is the name of a valid base unit in SBML (such as 'gram' or 'mole').

This method exists because prior to SBML Level 2 Version 3, an enumeration called UnitKind was defined by SBML. This enumeration was removed in SBML Level 2 Version 3 and its values were folded into the space of values of a type called UnitSId. This method therefore has less significance in SBML Level 2 Version 3 and Level 2 Version 4, but remains for backward compatibility and support for reading models in older Versions of Level 2.

Parameters:

	name	a string to be tested
	level	an unsigned int representing the SBML specification Level
	version	an unsigned int representing the SBML specification Version

Returns:: true if name is a valid UnitKind, false otherwise

Note:: The allowed unit names differ between SBML Levels 1 and 2 and again slightly between Level 2 Versions 1 and 2.

Definition at line 9120 of file libsbml.py.

def libsbml.Unit_merge ( args )

Python method signature(s):

Unit_merge(Unit unit1, Unit unit2)

Merges two Unit objects with the same 'kind' attribute value into a single Unit.

For example, the following,

  <unit kind='metre' exponent='2'/>
  <unit kind='metre' exponent='1'/>

would be merged to become

  <unit kind='metre' exponent='3'/>

Parameters:

	unit1	the first Unit object; the result of the operation is left as a new version of this unit, modified in-place.
	unit2	the second Unit object to merge with the first

Definition at line 9240 of file libsbml.py.

def libsbml.Unit_removeScale ( args )

Python method signature(s):

Unit_removeScale(Unit unit)    int

Manipulates the attributes of the Unit to express the unit with the value of the scale attribute reduced to zero.

For example, 1 millimetre can be expressed as a Unit with kind='metre' multiplier='1' scale='-3' exponent='1'. It can also be expressed as a Unit with kind='metre' multiplier='0.001' scale='0' exponent='1'.

Parameters:

unit

the Unit object to manipulate.

Returns:

integer value indicating success/failure of the function. The possible values returned by this function are:

LIBSBML_OPERATION_SUCCESS

Definition at line 9213 of file libsbml.py.

def libsbml.UnitDefinition_areEquivalent ( args )

Python method signature(s):

UnitDefinition_areEquivalent(UnitDefinition ud1, UnitDefinition ud2)    bool

Predicate returning true or false depending on whether two UnitDefinition objects are equivalent.

For the purposes of performing this comparison, two UnitDefinition objects are considered equivalent when they contain equivalent list of Unit objects. Unit objects are in turn considered equivalent if they satisfy the predicate Unit.areEquivalent(). The predicate tests a subset of the objects's attributes.

Parameters:

	ud1	the first UnitDefinition object to compare
	ud2	the second UnitDefinition object to compare

Returns:: true if all the Unit objects in ud1 are equivalent to the Unit objects in ud2, false otherwise.

See also:: areIdentical(const UnitDefinition * ud1, const UnitDefinition * ud2)
Unit.areEquivalent(Unit * unit1, Unit * unit2)

Definition at line 10505 of file libsbml.py.

def libsbml.UnitDefinition_areIdentical ( args )

Python method signature(s):

UnitDefinition_areIdentical(UnitDefinition ud1, UnitDefinition ud2)    bool

Predicate returning true or false depending on whether two UnitDefinition objects are identical.

For the purposes of performing this comparison, two UnitDefinition objects are considered identical when they contain identical lists of Unit objects. Pairs of Unit objects in the lists are in turn considered identical if they satisfy the predicate Unit.areIdentical(). The predicate compares every attribute of the Unit objects.

Parameters:

	ud1	the first UnitDefinition object to compare
	ud2	the second UnitDefinition object to compare

Returns:: true if all the Unit objects in ud1 are identical to the Unit objects of ud2, false otherwise.

See also:: areEquivalent(const UnitDefinition * ud1, const UnitDefinition * ud2)
Unit.areIdentical(Unit * unit1, Unit * unit2)

Definition at line 10475 of file libsbml.py.

def libsbml.UnitDefinition_combine ( args )

Python method signature(s):

UnitDefinition_combine(UnitDefinition ud1, UnitDefinition ud2)    UnitDefinition

Combines two UnitDefinition objects into a single UnitDefinition object which expresses the product of the units of the two UnitDefinition's.

Parameters:

	ud1	the first UnitDefinition object
	ud2	the second UnitDefinition object

Returns:: a UnitDefinition which represents the product of the units of the two argument UnitDefinitions.

Definition at line 10535 of file libsbml.py.

def libsbml.UnitDefinition_convertToSI ( args )

Python method signature(s):

UnitDefinition_convertToSI(UnitDefinition arg0)    UnitDefinition

Convert a given UnitDefinition into a new UnitDefinition object that uses SI units.

Parameters:

ud

the UnitDefinition object to convert to SI

Returns:: a new UnitDefinition object representing the results of the conversion.

Definition at line 10456 of file libsbml.py.

def libsbml.UnitDefinition_printUnits ( args )

Python method signature(s):

printUnits(UnitDefinition ud, bool compact = False)    string
  UnitDefinition_printUnits(UnitDefinition ud)    string

Returns a string that expresses the unit definition represented by this UnitDefinition object.

For example printUnits applied to

  <unitDefinition>
   <listOfUnits>
     <unit kind='metre' exponent='1'/>
     <unit kind='second' exponent='-2'/>
   </listOfUnits>
  <unitDefinition>

will return the string 'metre (exponent = 1, multiplier = 1, scale = 0) second (exponent = -2, multiplier = 1, scale = 0)' or, if compact = true, the string '(1 metre)^1 (1 second)^-2' This may be useful for printing unit information to human users, or in debugging, or other situations.

Parameters:

	ud	the UnitDefinition object
	compact	boolean indicating whether the compact form should be used (defaults to false)

Returns:: a string expressing the unit definition

Definition at line 10556 of file libsbml.py.

def libsbml.UnitDefinition_reorder ( args )

Python method signature(s):

UnitDefinition_reorder(UnitDefinition ud)

Orders alphabetically the Unit objects within the ListOfUnits of a UnitDefinition.

Parameters:

ud

the UnitDefinition object whose units are to be reordered.

Definition at line 10440 of file libsbml.py.

def libsbml.UnitDefinition_simplify ( args )

Python method signature(s):

UnitDefinition_simplify(UnitDefinition ud)

Simplifies the UnitDefinition so that any Unit objects occurring within the ListOfUnits occurs only once.

For example, the following definition,

  <unitDefinition>
   <listOfUnits>
     <unit kind='metre' exponent='1'/>
     <unit kind='metre' exponent='2'/>
   </listOfUnits>
  <unitDefinition>

will be simplified to

  <unitDefinition>
    <listOfUnits>
      <unit kind='metre' exponent='3'/>
    </listOfUnits>
  <unitDefinition>

Parameters:

ud

the UnitDefinition object to be simplified.

Definition at line 10406 of file libsbml.py.

def libsbml.UnitKind_equals ( args )

Python method signature(s):

UnitKind_equals(UnitKind_t uk1, UnitKind_t uk2)    int

Tests for logical equality between two given UnitKind_t values.

This function behaves exactly like C's == operator, except for the following two cases:

UNIT_KIND_LITER == UNIT_KIND_LITRE
UNIT_KIND_METER == UNIT_KIND_METRE

C equality comparison would yield false (because each of the above is a distinct enumeration value), but UnitKind_equals() returns true.

Parameters:

	uk1	a UnitKind_t enumeration value
	uk2	the UnitKind_t enumeration value to compare to `uk1`

Returns:: nonzero (for true) if uk1 is logically equivalent to uk2, zero (0) otherwise.

Note:: For more information about the UnitKind_t enumeration, please refer to the class documentation for Unit.

Definition at line 7785 of file libsbml.py.

def libsbml.UnitKind_forName ( args )

Python method signature(s):

UnitKind_forName(char name)    UnitKind_t

Converts a string to its corresponding UnitKind_t enumeration value.

Parameters:

name

a string, the name of a predefined base unit in SBML

Returns:: a value from UnitKind_t corresponding to the given name (determined in a case-insensitive manner).

Note:: For more information about the UnitKind_t enumeration, please refer to the class documentation for Unit.

Definition at line 7816 of file libsbml.py.

def libsbml.UnitKind_isValidUnitKindString ( args )

Python method signature(s):

UnitKind_isValidUnitKindString(char string, unsigned int level, unsigned int version)    int

Predicate for testing whether a given string corresponds to a predefined UnitKind_t enumeration value.

Returns:: nonzero (for true) if string is the name of a valid UnitKind_t enumeration value, zero (0) otherwise.

Note:: For more information about the UnitKind_t enumeration, please refer to the class documentation for Unit.

Definition at line 7860 of file libsbml.py.

def libsbml.UnitKind_toString ( args )

Python method signature(s):

UnitKind_toString(UnitKind_t uk)    char

Converts a UnitKind_t enumeration value to a text string equivalent.

Parameters:

uk

the UnitKind_t value to convert

Returns:: the name of the given UnitKind.

Note:: The string returned is a static data value. The caller does not own the returned string and is therefore not allowed to modify it.
For more information about the UnitKind_t enumeration, please refer to the class documentation for Unit.

Definition at line 7837 of file libsbml.py.

def libsbml.writeMathMLToString ( args )

Python method signature(s):

writeMathMLToString(ASTNode_t node)    char

Writes the given ASTNode (and its children) to a string as MathML, and returns the string.

Parameters:

node

the root of an AST to write out to the stream.

Returns:: a string containing the written-out MathML representation of the given AST

Note:: The string is owned by the caller and should be freed (with free()) when no longer needed. NULL is returned if the given argument is NULL.

Definition at line 25393 of file libsbml.py.

def libsbml.writeSBML ( args )

Python method signature(s):

writeSBML(SBMLDocument_t d, char filename)    int

Writes the given SBML document to filename. This convenience function is functionally equivalent to:

SBMLWriter_writeSBML(SBMLWriter_create(), d, filename);

Returns:: non-zero on success and zero if the filename could not be opened for writing.

Definition at line 1330 of file libsbml.py.

def libsbml.writeSBMLToString ( args )

Python method signature(s):

writeSBMLToString(SBMLDocument_t d)    char

Writes the given SBML document to an in-memory string and returns a pointer to it. The string is owned by the caller and should be freed (with free()) when no longer needed. This convenience function is functionally equivalent to:

SBMLWriter_writeSBMLToString(SBMLWriter_create(), d);

Returns:: the string on success and NULL if one of the underlying parser components fail (rare).

Definition at line 1349 of file libsbml.py.

def libsbml.XMLError_getStandardMessage ( args )

Python method signature(s):

XMLError_getStandardMessage(int code)    string

Returns a copy of the message string associated with the given predefined XMLError code.

Parameters:

code

the error code whose message is sought; it must be a predefined value from

Definition at line 30306 of file libsbml.py.

def libsbml.XMLNode_convertStringToXMLNode ( args )

Python method signature(s):

convertStringToXMLNode(string xmlstr, XMLNamespaces xmlns = None)    XMLNode
  XMLNode_convertStringToXMLNode(string xmlstr)    XMLNode

Returns an XMLNode which is derived from a string containing XML content.

The XML namespace must be defined using argument xmlns if the corresponding XML namespace attribute is not part of the string of the first argument.

Parameters:

	xmlstr	string to be converted to a XML node.
	xmlns	XMLNamespaces the namespaces to set (default value is NULL).

Note:: The caller owns the returned XMLNode and is reponsible for deleting it. The returned XMLNode object is a dummy root (container) XMLNode if the top-level element in the given XML string is NOT html, body, annotation, notes. In the dummy root node, each top-level element in the given XML string is contained as a child XMLNode. XMLToken.isEOF() can be used to identify if the returned XMLNode object is a dummy node.

Returns:: a XMLNode which is converted from string xmlstr. NULL is returned if the conversion failed.

The native C++ implementation of this method defines a default argument value. In the documentation generated for different libSBML language bindings, you may or may not see corresponding arguments in the method declarations. For example, in Java, a default argument is handled by declaring two separate methods, with one of them having the argument and the other one lacking the argument. However, the libSBML documentation will be identical for both methods. Consequently, if you are reading this and do not see an argument even though one is described, please look for descriptions of other variants of this method near where this one appears in the documentation.

Definition at line 29035 of file libsbml.py.

def libsbml.XMLNode_convertXMLNodeToString ( args )

Python method signature(s):

XMLNode_convertXMLNodeToString(XMLNode node)    string

Returns a string representation of a given XMLNode.

Parameters:

node

the XMLNode to be represented as a string

Returns:: a string-form representation of node

Definition at line 29018 of file libsbml.py.

Variable Documentation

tuple libsbml._libsbml = swig_import_helper()

Definition at line 26 of file libsbml.py.

int libsbml._newclass = 0

Definition at line 67 of file libsbml.py.

libsbml.AllChecksON = _libsbml.AllChecksON

Definition at line 6072 of file libsbml.py.

libsbml.AnnotationNotesNotAllowedLevel1 = _libsbml.AnnotationNotesNotAllowedLevel1

Definition at line 30613 of file libsbml.py.

libsbml.ApplyCiMustBeModelComponent = _libsbml.ApplyCiMustBeModelComponent

Definition at line 30554 of file libsbml.py.

libsbml.ApplyCiMustBeUserFunction = _libsbml.ApplyCiMustBeUserFunction

Definition at line 30553 of file libsbml.py.

libsbml.ArgsToEqNeedSameType = _libsbml.ArgsToEqNeedSameType

Definition at line 30550 of file libsbml.py.

libsbml.AssignmentToConstantEntity = _libsbml.AssignmentToConstantEntity

Definition at line 30666 of file libsbml.py.

libsbml.AssignRuleCompartmentMismatch = _libsbml.AssignRuleCompartmentMismatch

Definition at line 30574 of file libsbml.py.

libsbml.AssignRuleParameterMismatch = _libsbml.AssignRuleParameterMismatch

Definition at line 30576 of file libsbml.py.

libsbml.AssignRuleSpeciesMismatch = _libsbml.AssignRuleSpeciesMismatch

Definition at line 30575 of file libsbml.py.

libsbml.AST_CONSTANT_E = _libsbml.AST_CONSTANT_E

Definition at line 25426 of file libsbml.py.

libsbml.AST_CONSTANT_FALSE = _libsbml.AST_CONSTANT_FALSE

Definition at line 25427 of file libsbml.py.

libsbml.AST_CONSTANT_PI = _libsbml.AST_CONSTANT_PI

Definition at line 25428 of file libsbml.py.

libsbml.AST_CONSTANT_TRUE = _libsbml.AST_CONSTANT_TRUE

Definition at line 25429 of file libsbml.py.

libsbml.AST_DIVIDE = _libsbml.AST_DIVIDE

Definition at line 25418 of file libsbml.py.

libsbml.AST_FUNCTION = _libsbml.AST_FUNCTION

Definition at line 25431 of file libsbml.py.

libsbml.AST_FUNCTION_ABS = _libsbml.AST_FUNCTION_ABS

Definition at line 25432 of file libsbml.py.

libsbml.AST_FUNCTION_ARCCOS = _libsbml.AST_FUNCTION_ARCCOS

Definition at line 25433 of file libsbml.py.

libsbml.AST_FUNCTION_ARCCOSH = _libsbml.AST_FUNCTION_ARCCOSH

Definition at line 25434 of file libsbml.py.

libsbml.AST_FUNCTION_ARCCOT = _libsbml.AST_FUNCTION_ARCCOT

Definition at line 25435 of file libsbml.py.

libsbml.AST_FUNCTION_ARCCOTH = _libsbml.AST_FUNCTION_ARCCOTH

Definition at line 25436 of file libsbml.py.

libsbml.AST_FUNCTION_ARCCSC = _libsbml.AST_FUNCTION_ARCCSC

Definition at line 25437 of file libsbml.py.

libsbml.AST_FUNCTION_ARCCSCH = _libsbml.AST_FUNCTION_ARCCSCH

Definition at line 25438 of file libsbml.py.

libsbml.AST_FUNCTION_ARCSEC = _libsbml.AST_FUNCTION_ARCSEC

Definition at line 25439 of file libsbml.py.

libsbml.AST_FUNCTION_ARCSECH = _libsbml.AST_FUNCTION_ARCSECH

Definition at line 25440 of file libsbml.py.

libsbml.AST_FUNCTION_ARCSIN = _libsbml.AST_FUNCTION_ARCSIN

Definition at line 25441 of file libsbml.py.

libsbml.AST_FUNCTION_ARCSINH = _libsbml.AST_FUNCTION_ARCSINH

Definition at line 25442 of file libsbml.py.

libsbml.AST_FUNCTION_ARCTAN = _libsbml.AST_FUNCTION_ARCTAN

Definition at line 25443 of file libsbml.py.

libsbml.AST_FUNCTION_ARCTANH = _libsbml.AST_FUNCTION_ARCTANH

Definition at line 25444 of file libsbml.py.

libsbml.AST_FUNCTION_CEILING = _libsbml.AST_FUNCTION_CEILING

Definition at line 25445 of file libsbml.py.

libsbml.AST_FUNCTION_COS = _libsbml.AST_FUNCTION_COS

Definition at line 25446 of file libsbml.py.

libsbml.AST_FUNCTION_COSH = _libsbml.AST_FUNCTION_COSH

Definition at line 25447 of file libsbml.py.

libsbml.AST_FUNCTION_COT = _libsbml.AST_FUNCTION_COT

Definition at line 25448 of file libsbml.py.

libsbml.AST_FUNCTION_COTH = _libsbml.AST_FUNCTION_COTH

Definition at line 25449 of file libsbml.py.

libsbml.AST_FUNCTION_CSC = _libsbml.AST_FUNCTION_CSC

Definition at line 25450 of file libsbml.py.

libsbml.AST_FUNCTION_CSCH = _libsbml.AST_FUNCTION_CSCH

Definition at line 25451 of file libsbml.py.

libsbml.AST_FUNCTION_DELAY = _libsbml.AST_FUNCTION_DELAY

Definition at line 25452 of file libsbml.py.

libsbml.AST_FUNCTION_EXP = _libsbml.AST_FUNCTION_EXP

Definition at line 25453 of file libsbml.py.

libsbml.AST_FUNCTION_FACTORIAL = _libsbml.AST_FUNCTION_FACTORIAL

Definition at line 25454 of file libsbml.py.

libsbml.AST_FUNCTION_FLOOR = _libsbml.AST_FUNCTION_FLOOR

Definition at line 25455 of file libsbml.py.

libsbml.AST_FUNCTION_LN = _libsbml.AST_FUNCTION_LN

Definition at line 25456 of file libsbml.py.

libsbml.AST_FUNCTION_LOG = _libsbml.AST_FUNCTION_LOG

Definition at line 25457 of file libsbml.py.

libsbml.AST_FUNCTION_PIECEWISE = _libsbml.AST_FUNCTION_PIECEWISE

Definition at line 25458 of file libsbml.py.

libsbml.AST_FUNCTION_POWER = _libsbml.AST_FUNCTION_POWER

Definition at line 25459 of file libsbml.py.

libsbml.AST_FUNCTION_ROOT = _libsbml.AST_FUNCTION_ROOT

Definition at line 25460 of file libsbml.py.

libsbml.AST_FUNCTION_SEC = _libsbml.AST_FUNCTION_SEC

Definition at line 25461 of file libsbml.py.

libsbml.AST_FUNCTION_SECH = _libsbml.AST_FUNCTION_SECH

Definition at line 25462 of file libsbml.py.

libsbml.AST_FUNCTION_SIN = _libsbml.AST_FUNCTION_SIN

Definition at line 25463 of file libsbml.py.

libsbml.AST_FUNCTION_SINH = _libsbml.AST_FUNCTION_SINH

Definition at line 25464 of file libsbml.py.

libsbml.AST_FUNCTION_TAN = _libsbml.AST_FUNCTION_TAN

Definition at line 25465 of file libsbml.py.

libsbml.AST_FUNCTION_TANH = _libsbml.AST_FUNCTION_TANH

Definition at line 25466 of file libsbml.py.

libsbml.AST_INTEGER = _libsbml.AST_INTEGER

Definition at line 25420 of file libsbml.py.

libsbml.AST_LAMBDA = _libsbml.AST_LAMBDA

Definition at line 25430 of file libsbml.py.

libsbml.AST_LOGICAL_AND = _libsbml.AST_LOGICAL_AND

Definition at line 25467 of file libsbml.py.

libsbml.AST_LOGICAL_NOT = _libsbml.AST_LOGICAL_NOT

Definition at line 25468 of file libsbml.py.

libsbml.AST_LOGICAL_OR = _libsbml.AST_LOGICAL_OR

Definition at line 25469 of file libsbml.py.

libsbml.AST_LOGICAL_XOR = _libsbml.AST_LOGICAL_XOR

Definition at line 25470 of file libsbml.py.

libsbml.AST_MINUS = _libsbml.AST_MINUS

Definition at line 25416 of file libsbml.py.

libsbml.AST_NAME = _libsbml.AST_NAME

Definition at line 25424 of file libsbml.py.

libsbml.AST_NAME_TIME = _libsbml.AST_NAME_TIME

Definition at line 25425 of file libsbml.py.

libsbml.AST_PLUS = _libsbml.AST_PLUS

Definition at line 25415 of file libsbml.py.

libsbml.AST_POWER = _libsbml.AST_POWER

Definition at line 25419 of file libsbml.py.

libsbml.AST_RATIONAL = _libsbml.AST_RATIONAL

Definition at line 25423 of file libsbml.py.

libsbml.AST_REAL = _libsbml.AST_REAL

Definition at line 25421 of file libsbml.py.

libsbml.AST_REAL_E = _libsbml.AST_REAL_E

Definition at line 25422 of file libsbml.py.

libsbml.AST_RELATIONAL_EQ = _libsbml.AST_RELATIONAL_EQ

Definition at line 25471 of file libsbml.py.

libsbml.AST_RELATIONAL_GEQ = _libsbml.AST_RELATIONAL_GEQ

Definition at line 25472 of file libsbml.py.

libsbml.AST_RELATIONAL_GT = _libsbml.AST_RELATIONAL_GT

Definition at line 25473 of file libsbml.py.

libsbml.AST_RELATIONAL_LEQ = _libsbml.AST_RELATIONAL_LEQ

Definition at line 25474 of file libsbml.py.

libsbml.AST_RELATIONAL_LT = _libsbml.AST_RELATIONAL_LT

Definition at line 25475 of file libsbml.py.

libsbml.AST_RELATIONAL_NEQ = _libsbml.AST_RELATIONAL_NEQ

Definition at line 25476 of file libsbml.py.

libsbml.AST_TIMES = _libsbml.AST_TIMES

Definition at line 25417 of file libsbml.py.

libsbml.AST_UNKNOWN = _libsbml.AST_UNKNOWN

Definition at line 25477 of file libsbml.py.

libsbml.BadCsymbolDefinitionURLValue = _libsbml.BadCsymbolDefinitionURLValue

Definition at line 30544 of file libsbml.py.

libsbml.BadlyFormedXML = _libsbml.BadlyFormedXML

Definition at line 29454 of file libsbml.py.

libsbml.BadMathML = _libsbml.BadMathML

Definition at line 30759 of file libsbml.py.

libsbml.BadMathMLNodeType = _libsbml.BadMathMLNodeType

Definition at line 30764 of file libsbml.py.

libsbml.BadProcessingInstruction = _libsbml.BadProcessingInstruction

Definition at line 29460 of file libsbml.py.

libsbml.BadXMLAttribute = _libsbml.BadXMLAttribute

Definition at line 29468 of file libsbml.py.

libsbml.BadXMLAttributeValue = _libsbml.BadXMLAttributeValue

Definition at line 29467 of file libsbml.py.

libsbml.BadXMLComment = _libsbml.BadXMLComment

Definition at line 29470 of file libsbml.py.

libsbml.BadXMLDecl = _libsbml.BadXMLDecl

Definition at line 29451 of file libsbml.py.

libsbml.BadXMLDeclLocation = _libsbml.BadXMLDeclLocation

Definition at line 29471 of file libsbml.py.

libsbml.BadXMLDOCTYPE = _libsbml.BadXMLDOCTYPE

Definition at line 29452 of file libsbml.py.

libsbml.BadXMLDocumentStructure = _libsbml.BadXMLDocumentStructure

Definition at line 29476 of file libsbml.py.

libsbml.BadXMLIDRef = _libsbml.BadXMLIDRef

Definition at line 29474 of file libsbml.py.

libsbml.BadXMLIDValue = _libsbml.BadXMLIDValue

Definition at line 29473 of file libsbml.py.

libsbml.BadXMLPrefix = _libsbml.BadXMLPrefix

Definition at line 29461 of file libsbml.py.

libsbml.BadXMLPrefixValue = _libsbml.BadXMLPrefixValue

Definition at line 29462 of file libsbml.py.

libsbml.BIOLOGICAL_QUALIFIER = _libsbml.BIOLOGICAL_QUALIFIER

Definition at line 31418 of file libsbml.py.

libsbml.BooleanOpsNeedBooleanArgs = _libsbml.BooleanOpsNeedBooleanArgs

Definition at line 30548 of file libsbml.py.

libsbml.BothAmountAndConcentrationSet = _libsbml.BothAmountAndConcentrationSet

Definition at line 30653 of file libsbml.py.

libsbml.BothStoichiometryAndMath = _libsbml.BothStoichiometryAndMath

Definition at line 30683 of file libsbml.py.

libsbml.BQB_ENCODES = _libsbml.BQB_ENCODES

Definition at line 31431 of file libsbml.py.

libsbml.BQB_HAS_PART = _libsbml.BQB_HAS_PART

Definition at line 31424 of file libsbml.py.

libsbml.BQB_HAS_VERSION = _libsbml.BQB_HAS_VERSION

Definition at line 31427 of file libsbml.py.

libsbml.BQB_IS = _libsbml.BQB_IS

Definition at line 31423 of file libsbml.py.

libsbml.BQB_IS_DESCRIBED_BY = _libsbml.BQB_IS_DESCRIBED_BY

Definition at line 31429 of file libsbml.py.

libsbml.BQB_IS_ENCODED_BY = _libsbml.BQB_IS_ENCODED_BY

Definition at line 31430 of file libsbml.py.

libsbml.BQB_IS_HOMOLOG_TO = _libsbml.BQB_IS_HOMOLOG_TO

Definition at line 31428 of file libsbml.py.

libsbml.BQB_IS_PART_OF = _libsbml.BQB_IS_PART_OF

Definition at line 31425 of file libsbml.py.

libsbml.BQB_IS_VERSION_OF = _libsbml.BQB_IS_VERSION_OF

Definition at line 31426 of file libsbml.py.

libsbml.BQB_OCCURS_IN = _libsbml.BQB_OCCURS_IN

Definition at line 31432 of file libsbml.py.

libsbml.BQB_UNKNOWN = _libsbml.BQB_UNKNOWN

Definition at line 31433 of file libsbml.py.

libsbml.BQM_IS = _libsbml.BQM_IS

Definition at line 31420 of file libsbml.py.

libsbml.BQM_IS_DESCRIBED_BY = _libsbml.BQM_IS_DESCRIBED_BY

Definition at line 31421 of file libsbml.py.

libsbml.BQM_UNKNOWN = _libsbml.BQM_UNKNOWN

Definition at line 31422 of file libsbml.py.

libsbml.CannotConvertToL1V1 = _libsbml.CannotConvertToL1V1

Definition at line 30704 of file libsbml.py.

libsbml.CelsiusNoLongerValid = _libsbml.CelsiusNoLongerValid

Definition at line 30634 of file libsbml.py.

libsbml.cerr = cvar.cerr

Definition at line 991 of file libsbml.py.

libsbml.CircularRuleDependency = _libsbml.CircularRuleDependency

Definition at line 30669 of file libsbml.py.

libsbml.clog = cvar.clog

Definition at line 992 of file libsbml.py.

libsbml.CompartmentShouldHaveSize = _libsbml.CompartmentShouldHaveSize

Definition at line 30700 of file libsbml.py.

libsbml.CompartmentTypeNotValidAttribute = _libsbml.CompartmentTypeNotValidAttribute

Definition at line 30773 of file libsbml.py.

libsbml.CompartmentTypeNotValidComponent = _libsbml.CompartmentTypeNotValidComponent

Definition at line 30779 of file libsbml.py.

libsbml.ConstantNotValidAttribute = _libsbml.ConstantNotValidAttribute

Definition at line 30774 of file libsbml.py.

libsbml.ConstantSpeciesNotValidAttribute = _libsbml.ConstantSpeciesNotValidAttribute

Definition at line 30787 of file libsbml.py.

libsbml.ConstraintContainsDOCTYPE = _libsbml.ConstraintContainsDOCTYPE

Definition at line 30674 of file libsbml.py.

libsbml.ConstraintContainsXMLDecl = _libsbml.ConstraintContainsXMLDecl

Definition at line 30673 of file libsbml.py.

libsbml.ConstraintMathNotBoolean = _libsbml.ConstraintMathNotBoolean

Definition at line 30670 of file libsbml.py.

libsbml.ConstraintNotInXHTMLNamespace = _libsbml.ConstraintNotInXHTMLNamespace

Definition at line 30672 of file libsbml.py.

libsbml.ConstraintNotValidComponent = _libsbml.ConstraintNotValidComponent

Definition at line 30780 of file libsbml.py.

libsbml.cout = cvar.cout

Definition at line 990 of file libsbml.py.

libsbml.cvar = _libsbml.cvar

Definition at line 582 of file libsbml.py.

libsbml.DelayUnitsNotTime = _libsbml.DelayUnitsNotTime

Definition at line 30584 of file libsbml.py.

libsbml.DisallowedDefinitionURLUse = _libsbml.DisallowedDefinitionURLUse

Definition at line 30543 of file libsbml.py.

libsbml.DisallowedMathMLEncodingUse = _libsbml.DisallowedMathMLEncodingUse

Definition at line 30542 of file libsbml.py.

libsbml.DisallowedMathMLSymbol = _libsbml.DisallowedMathMLSymbol

Definition at line 30541 of file libsbml.py.

libsbml.DisallowedMathTypeAttributeUse = _libsbml.DisallowedMathTypeAttributeUse

Definition at line 30545 of file libsbml.py.

libsbml.DisallowedMathTypeAttributeValue = _libsbml.DisallowedMathTypeAttributeValue

Definition at line 30546 of file libsbml.py.

libsbml.DuplicateAnnotationInvalidInL2v2 = _libsbml.DuplicateAnnotationInvalidInL2v2

Definition at line 30735 of file libsbml.py.

libsbml.DuplicateAnnotationInvalidInL2v3 = _libsbml.DuplicateAnnotationInvalidInL2v3

Definition at line 30745 of file libsbml.py.

libsbml.DuplicateAnnotationInvalidInL2v4 = _libsbml.DuplicateAnnotationInvalidInL2v4

Definition at line 30752 of file libsbml.py.

libsbml.DuplicateAnnotationNamespaces = _libsbml.DuplicateAnnotationNamespaces

Definition at line 30571 of file libsbml.py.

libsbml.DuplicateComponentId = _libsbml.DuplicateComponentId

Definition at line 30559 of file libsbml.py.

libsbml.DuplicateLocalParameterId = _libsbml.DuplicateLocalParameterId

Definition at line 30561 of file libsbml.py.

libsbml.DuplicateMetaId = _libsbml.DuplicateMetaId

Definition at line 30565 of file libsbml.py.

libsbml.DuplicateUnitDefinitionId = _libsbml.DuplicateUnitDefinitionId

Definition at line 30560 of file libsbml.py.

libsbml.DuplicateXMLAttribute = _libsbml.DuplicateXMLAttribute

Definition at line 29458 of file libsbml.py.

libsbml.EmptyListElement = _libsbml.EmptyListElement

Definition at line 30616 of file libsbml.py.

libsbml.EmptyListInKineticLaw = _libsbml.EmptyListInKineticLaw

Definition at line 30686 of file libsbml.py.

libsbml.EmptyListInReaction = _libsbml.EmptyListInReaction

Definition at line 30678 of file libsbml.py.

libsbml.EmptyListOfUnits = _libsbml.EmptyListOfUnits

Definition at line 30631 of file libsbml.py.

libsbml.EventAndAssignmentRuleForId = _libsbml.EventAndAssignmentRuleForId

Definition at line 30564 of file libsbml.py.

libsbml.EventAssignCompartmentMismatch = _libsbml.EventAssignCompartmentMismatch

Definition at line 30585 of file libsbml.py.

libsbml.EventAssignmentForConstantEntity = _libsbml.EventAssignmentForConstantEntity

Definition at line 30698 of file libsbml.py.

libsbml.EventAssignParameterMismatch = _libsbml.EventAssignParameterMismatch

Definition at line 30587 of file libsbml.py.

libsbml.EventAssignSpeciesMismatch = _libsbml.EventAssignSpeciesMismatch

Definition at line 30586 of file libsbml.py.

libsbml.EventNotValidComponent = _libsbml.EventNotValidComponent

Definition at line 30781 of file libsbml.py.

libsbml.FailedMathMLReadOfDouble = _libsbml.FailedMathMLReadOfDouble

Definition at line 30760 of file libsbml.py.

libsbml.FailedMathMLReadOfExponential = _libsbml.FailedMathMLReadOfExponential

Definition at line 30762 of file libsbml.py.

libsbml.FailedMathMLReadOfInteger = _libsbml.FailedMathMLReadOfInteger

Definition at line 30761 of file libsbml.py.

libsbml.FailedMathMLReadOfRational = _libsbml.FailedMathMLReadOfRational

Definition at line 30763 of file libsbml.py.

libsbml.FormulaInLevel1KL = _libsbml.FormulaInLevel1KL

Definition at line 30757 of file libsbml.py.

libsbml.FuncDefNotValidComponent = _libsbml.FuncDefNotValidComponent

Definition at line 30783 of file libsbml.py.

libsbml.FunctionDefMathNotLambda = _libsbml.FunctionDefMathNotLambda

Definition at line 30618 of file libsbml.py.

libsbml.GeneralWarningNotSpecified = _libsbml.GeneralWarningNotSpecified

Definition at line 30699 of file libsbml.py.

libsbml.HasOnlySubsNoSpatialUnits = _libsbml.HasOnlySubsNoSpatialUnits

Definition at line 30646 of file libsbml.py.

libsbml.HasOnlySubsUnitsNotValidAttribute = _libsbml.HasOnlySubsUnitsNotValidAttribute

Definition at line 30790 of file libsbml.py.

libsbml.IdCheckOFF = _libsbml.IdCheckOFF

Definition at line 6059 of file libsbml.py.

libsbml.IdCheckON = _libsbml.IdCheckON

Definition at line 6058 of file libsbml.py.

libsbml.IdNotValidAttribute = _libsbml.IdNotValidAttribute

Definition at line 30791 of file libsbml.py.

libsbml.InconsistentArgUnits = _libsbml.InconsistentArgUnits

Definition at line 30573 of file libsbml.py.

libsbml.InconsistentArgUnitsWarnings = _libsbml.InconsistentArgUnitsWarnings

Definition at line 30766 of file libsbml.py.

libsbml.InconsistentExponUnitsWarnings = _libsbml.InconsistentExponUnitsWarnings

Definition at line 30768 of file libsbml.py.

libsbml.InconsistentPowerUnitsWarnings = _libsbml.InconsistentPowerUnitsWarnings

Definition at line 30767 of file libsbml.py.

libsbml.IncorrectCompartmentSpatialDimensions = _libsbml.IncorrectCompartmentSpatialDimensions

Definition at line 30772 of file libsbml.py.

libsbml.IncorrectOrderInConstraint = _libsbml.IncorrectOrderInConstraint

Definition at line 30671 of file libsbml.py.

libsbml.IncorrectOrderInEvent = _libsbml.IncorrectOrderInEvent

Definition at line 30695 of file libsbml.py.

libsbml.IncorrectOrderInKineticLaw = _libsbml.IncorrectOrderInKineticLaw

Definition at line 30685 of file libsbml.py.

libsbml.IncorrectOrderInModel = _libsbml.IncorrectOrderInModel

Definition at line 30615 of file libsbml.py.

libsbml.IncorrectOrderInReaction = _libsbml.IncorrectOrderInReaction

Definition at line 30677 of file libsbml.py.

libsbml.InitAssignCompartmenMismatch = _libsbml.InitAssignCompartmenMismatch

Definition at line 30577 of file libsbml.py.

libsbml.InitAssignmentAndRuleForSameId = _libsbml.InitAssignmentAndRuleForSameId

Definition at line 30663 of file libsbml.py.

libsbml.InitAssignParameterMismatch = _libsbml.InitAssignParameterMismatch

Definition at line 30579 of file libsbml.py.

libsbml.InitAssignSpeciesMismatch = _libsbml.InitAssignSpeciesMismatch

Definition at line 30578 of file libsbml.py.

libsbml.InitialAssignNotValidComponent = _libsbml.InitialAssignNotValidComponent

Definition at line 30784 of file libsbml.py.

libsbml.InternalXMLParserError = _libsbml.InternalXMLParserError

Definition at line 29446 of file libsbml.py.

libsbml.Invalid1DCompartmentUnits = _libsbml.Invalid1DCompartmentUnits

Definition at line 30641 of file libsbml.py.

libsbml.Invalid2DCompartmentUnits = _libsbml.Invalid2DCompartmentUnits

Definition at line 30642 of file libsbml.py.

libsbml.Invalid3DCompartmentUnits = _libsbml.Invalid3DCompartmentUnits

Definition at line 30643 of file libsbml.py.

libsbml.InvalidAfterXMLContent = _libsbml.InvalidAfterXMLContent

Definition at line 29477 of file libsbml.py.

libsbml.InvalidApplyCiInLambda = _libsbml.InvalidApplyCiInLambda

Definition at line 30619 of file libsbml.py.

libsbml.InvalidAreaRedefinition = _libsbml.InvalidAreaRedefinition

Definition at line 30626 of file libsbml.py.

libsbml.InvalidAssignRuleVariable = _libsbml.InvalidAssignRuleVariable

Definition at line 30664 of file libsbml.py.

libsbml.InvalidCharInXML = _libsbml.InvalidCharInXML

Definition at line 29453 of file libsbml.py.

libsbml.InvalidCiInLambda = _libsbml.InvalidCiInLambda

Definition at line 30621 of file libsbml.py.

libsbml.InvalidCompartmentSBOTerm = _libsbml.InvalidCompartmentSBOTerm

Definition at line 30600 of file libsbml.py.

libsbml.InvalidCompartmentTypeRef = _libsbml.InvalidCompartmentTypeRef

Definition at line 30644 of file libsbml.py.

libsbml.InvalidCompartmentTypeSBOTerm = _libsbml.InvalidCompartmentTypeSBOTerm

Definition at line 30602 of file libsbml.py.

libsbml.InvalidConstraintContent = _libsbml.InvalidConstraintContent

Definition at line 30675 of file libsbml.py.

libsbml.InvalidConstraintSBOTerm = _libsbml.InvalidConstraintSBOTerm

Definition at line 30594 of file libsbml.py.

libsbml.InvalidDelaySBOTerm = _libsbml.InvalidDelaySBOTerm

Definition at line 30605 of file libsbml.py.

libsbml.InvalidEventAssignmentSBOTerm = _libsbml.InvalidEventAssignmentSBOTerm

Definition at line 30599 of file libsbml.py.

libsbml.InvalidEventAssignmentVariable = _libsbml.InvalidEventAssignmentVariable

Definition at line 30697 of file libsbml.py.

libsbml.InvalidEventSBOTerm = _libsbml.InvalidEventSBOTerm

Definition at line 30598 of file libsbml.py.

libsbml.InvalidFunctionDefReturnType = _libsbml.InvalidFunctionDefReturnType

Definition at line 30622 of file libsbml.py.

libsbml.InvalidFunctionDefSBOTerm = _libsbml.InvalidFunctionDefSBOTerm

Definition at line 30590 of file libsbml.py.

libsbml.InvalidIdSyntax = _libsbml.InvalidIdSyntax

Definition at line 30568 of file libsbml.py.

libsbml.InvalidInitAssignSBOTerm = _libsbml.InvalidInitAssignSBOTerm

Definition at line 30592 of file libsbml.py.

libsbml.InvalidInitAssignSymbol = _libsbml.InvalidInitAssignSymbol

Definition at line 30661 of file libsbml.py.

libsbml.InvalidKineticLawSBOTerm = _libsbml.InvalidKineticLawSBOTerm

Definition at line 30597 of file libsbml.py.

libsbml.InvalidL1CompartmentUnits = _libsbml.InvalidL1CompartmentUnits

Definition at line 30777 of file libsbml.py.

libsbml.InvalidLengthRedefinition = _libsbml.InvalidLengthRedefinition

Definition at line 30625 of file libsbml.py.

libsbml.InvalidMathElement = _libsbml.InvalidMathElement

Definition at line 30540 of file libsbml.py.

libsbml.InvalidMetaidSyntax = _libsbml.InvalidMetaidSyntax

Definition at line 30567 of file libsbml.py.

libsbml.InvalidModelSBOTerm = _libsbml.InvalidModelSBOTerm

Definition at line 30589 of file libsbml.py.

libsbml.InvalidModifiersList = _libsbml.InvalidModifiersList

Definition at line 30680 of file libsbml.py.

libsbml.InvalidNamespaceOnSBML = _libsbml.InvalidNamespaceOnSBML

Definition at line 30610 of file libsbml.py.

libsbml.InvalidNoArgsPassedToFunctionDef = _libsbml.InvalidNoArgsPassedToFunctionDef

Definition at line 30558 of file libsbml.py.

libsbml.InvalidNotesContent = _libsbml.InvalidNotesContent

Definition at line 30609 of file libsbml.py.

libsbml.InvalidParameterSBOTerm = _libsbml.InvalidParameterSBOTerm

Definition at line 30591 of file libsbml.py.

libsbml.InvalidParameterUnits = _libsbml.InvalidParameterUnits

Definition at line 30660 of file libsbml.py.

libsbml.InvalidRateRuleVariable = _libsbml.InvalidRateRuleVariable

Definition at line 30665 of file libsbml.py.

libsbml.InvalidReactantsProductsList = _libsbml.InvalidReactantsProductsList

Definition at line 30679 of file libsbml.py.

libsbml.InvalidReactionSBOTerm = _libsbml.InvalidReactionSBOTerm

Definition at line 30595 of file libsbml.py.

libsbml.InvalidRuleOrdering = _libsbml.InvalidRuleOrdering

Definition at line 30754 of file libsbml.py.

libsbml.InvalidRuleSBOTerm = _libsbml.InvalidRuleSBOTerm

Definition at line 30593 of file libsbml.py.

libsbml.InvalidSBMLLevelVersion = _libsbml.InvalidSBMLLevelVersion

Definition at line 30753 of file libsbml.py.

libsbml.InvalidSBOTermSyntax = _libsbml.InvalidSBOTermSyntax

Definition at line 30566 of file libsbml.py.

libsbml.InvalidSpeciesCompartmentRef = _libsbml.InvalidSpeciesCompartmentRef

Definition at line 30645 of file libsbml.py.

libsbml.InvalidSpeciesReference = _libsbml.InvalidSpeciesReference

Definition at line 30681 of file libsbml.py.

libsbml.InvalidSpeciesReferenceSBOTerm = _libsbml.InvalidSpeciesReferenceSBOTerm

Definition at line 30596 of file libsbml.py.

libsbml.InvalidSpeciesSBOTerm = _libsbml.InvalidSpeciesSBOTerm

Definition at line 30601 of file libsbml.py.

libsbml.InvalidSpeciesSusbstanceUnits = _libsbml.InvalidSpeciesSusbstanceUnits

Definition at line 30652 of file libsbml.py.

libsbml.InvalidSpeciesTypeRef = _libsbml.InvalidSpeciesTypeRef

Definition at line 30656 of file libsbml.py.

libsbml.InvalidSpeciesTypeSBOTerm = _libsbml.InvalidSpeciesTypeSBOTerm

Definition at line 30603 of file libsbml.py.

libsbml.InvalidSubstanceRedefinition = _libsbml.InvalidSubstanceRedefinition

Definition at line 30624 of file libsbml.py.

libsbml.InvalidTimeRedefinition = _libsbml.InvalidTimeRedefinition

Definition at line 30627 of file libsbml.py.

libsbml.InvalidTriggerSBOTerm = _libsbml.InvalidTriggerSBOTerm

Definition at line 30604 of file libsbml.py.

libsbml.InvalidUnitDefId = _libsbml.InvalidUnitDefId

Definition at line 30623 of file libsbml.py.

libsbml.InvalidUnitIdSyntax = _libsbml.InvalidUnitIdSyntax

Definition at line 30569 of file libsbml.py.

libsbml.InvalidUnitKind = _libsbml.InvalidUnitKind

Definition at line 30632 of file libsbml.py.

libsbml.InvalidVolumeRedefinition = _libsbml.InvalidVolumeRedefinition

Definition at line 30628 of file libsbml.py.

libsbml.InvalidXMLConstruct = _libsbml.InvalidXMLConstruct

Definition at line 29456 of file libsbml.py.

libsbml.KineticLawNotSubstancePerTime = _libsbml.KineticLawNotSubstancePerTime

Definition at line 30583 of file libsbml.py.

libsbml.KineticLawParametersAreLocalOnly = _libsbml.KineticLawParametersAreLocalOnly

Definition at line 30555 of file libsbml.py.

libsbml.L1V1CompartmentVolumeReqd = _libsbml.L1V1CompartmentVolumeReqd

Definition at line 30778 of file libsbml.py.

libsbml.LambdaOnlyAllowedInFunctionDef = _libsbml.LambdaOnlyAllowedInFunctionDef

Definition at line 30547 of file libsbml.py.

libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY = _libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY

Definition at line 30802 of file libsbml.py.

libsbml.LIBSBML_CAT_IDENTIFIER_CONSISTENCY = _libsbml.LIBSBML_CAT_IDENTIFIER_CONSISTENCY

Definition at line 30803 of file libsbml.py.

libsbml.LIBSBML_CAT_INTERNAL = _libsbml.LIBSBML_CAT_INTERNAL

Definition at line 29485 of file libsbml.py.

libsbml.LIBSBML_CAT_INTERNAL_CONSISTENCY = _libsbml.LIBSBML_CAT_INTERNAL_CONSISTENCY

Definition at line 30810 of file libsbml.py.

libsbml.LIBSBML_CAT_MATHML_CONSISTENCY = _libsbml.LIBSBML_CAT_MATHML_CONSISTENCY

Definition at line 30805 of file libsbml.py.

libsbml.LIBSBML_CAT_MODELING_PRACTICE = _libsbml.LIBSBML_CAT_MODELING_PRACTICE

Definition at line 30809 of file libsbml.py.

libsbml.LIBSBML_CAT_OVERDETERMINED_MODEL = _libsbml.LIBSBML_CAT_OVERDETERMINED_MODEL

Definition at line 30807 of file libsbml.py.

libsbml.LIBSBML_CAT_SBML = _libsbml.LIBSBML_CAT_SBML

Definition at line 30798 of file libsbml.py.

libsbml.LIBSBML_CAT_SBML_L1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L1_COMPAT

Definition at line 30799 of file libsbml.py.

libsbml.LIBSBML_CAT_SBML_L2V1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V1_COMPAT

Definition at line 30800 of file libsbml.py.

libsbml.LIBSBML_CAT_SBML_L2V2_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V2_COMPAT

Definition at line 30801 of file libsbml.py.

libsbml.LIBSBML_CAT_SBML_L2V3_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V3_COMPAT

Definition at line 30808 of file libsbml.py.

libsbml.LIBSBML_CAT_SBML_L2V4_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V4_COMPAT

Definition at line 30811 of file libsbml.py.

libsbml.LIBSBML_CAT_SBO_CONSISTENCY = _libsbml.LIBSBML_CAT_SBO_CONSISTENCY

Definition at line 30806 of file libsbml.py.

libsbml.LIBSBML_CAT_SYSTEM = _libsbml.LIBSBML_CAT_SYSTEM

Definition at line 29486 of file libsbml.py.

libsbml.LIBSBML_CAT_UNITS_CONSISTENCY = _libsbml.LIBSBML_CAT_UNITS_CONSISTENCY

Definition at line 30804 of file libsbml.py.

libsbml.LIBSBML_CAT_XML = _libsbml.LIBSBML_CAT_XML

Definition at line 29487 of file libsbml.py.

libsbml.LIBSBML_DOTTED_VERSION = _libsbml.LIBSBML_DOTTED_VERSION

Definition at line 688 of file libsbml.py.

libsbml.LIBSBML_DUPLICATE_OBJECT_ID = _libsbml.LIBSBML_DUPLICATE_OBJECT_ID

Definition at line 743 of file libsbml.py.

libsbml.LIBSBML_INDEX_EXCEEDS_SIZE = _libsbml.LIBSBML_INDEX_EXCEEDS_SIZE

Definition at line 738 of file libsbml.py.

libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE = _libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE

Definition at line 741 of file libsbml.py.

libsbml.LIBSBML_INVALID_OBJECT = _libsbml.LIBSBML_INVALID_OBJECT

Definition at line 742 of file libsbml.py.

libsbml.LIBSBML_INVALID_XML_OPERATION = _libsbml.LIBSBML_INVALID_XML_OPERATION

Definition at line 746 of file libsbml.py.

libsbml.LIBSBML_LEVEL_MISMATCH = _libsbml.LIBSBML_LEVEL_MISMATCH

Definition at line 744 of file libsbml.py.

libsbml.LIBSBML_OPERATION_FAILED = _libsbml.LIBSBML_OPERATION_FAILED

Definition at line 740 of file libsbml.py.

libsbml.LIBSBML_OPERATION_RETURN_VALUES_H = _libsbml.LIBSBML_OPERATION_RETURN_VALUES_H

Definition at line 736 of file libsbml.py.

libsbml.LIBSBML_OPERATION_SUCCESS = _libsbml.LIBSBML_OPERATION_SUCCESS

Definition at line 737 of file libsbml.py.

libsbml.LIBSBML_SEV_ERROR = _libsbml.LIBSBML_SEV_ERROR

Definition at line 29490 of file libsbml.py.

libsbml.LIBSBML_SEV_FATAL = _libsbml.LIBSBML_SEV_FATAL

Definition at line 29491 of file libsbml.py.

libsbml.LIBSBML_SEV_GENERAL_WARNING = _libsbml.LIBSBML_SEV_GENERAL_WARNING

Definition at line 30813 of file libsbml.py.

libsbml.LIBSBML_SEV_INFO = _libsbml.LIBSBML_SEV_INFO

Definition at line 29488 of file libsbml.py.

libsbml.LIBSBML_SEV_NOT_APPLICABLE = _libsbml.LIBSBML_SEV_NOT_APPLICABLE

Definition at line 30814 of file libsbml.py.

libsbml.LIBSBML_SEV_SCHEMA_ERROR = _libsbml.LIBSBML_SEV_SCHEMA_ERROR

Definition at line 30812 of file libsbml.py.

libsbml.LIBSBML_SEV_WARNING = _libsbml.LIBSBML_SEV_WARNING

Definition at line 29489 of file libsbml.py.

libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE = _libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE

Definition at line 739 of file libsbml.py.

libsbml.LIBSBML_VERSION = _libsbml.LIBSBML_VERSION

Definition at line 689 of file libsbml.py.

libsbml.LIBSBML_VERSION_MISMATCH = _libsbml.LIBSBML_VERSION_MISMATCH

Definition at line 745 of file libsbml.py.

libsbml.LIBSBML_VERSION_STRING = _libsbml.LIBSBML_VERSION_STRING

Definition at line 690 of file libsbml.py.

libsbml.LibSBMLAdditionalCodesLowerBound = _libsbml.LibSBMLAdditionalCodesLowerBound

Definition at line 30703 of file libsbml.py.

libsbml.LocalParameterShadowsId = _libsbml.LocalParameterShadowsId

Definition at line 30702 of file libsbml.py.

libsbml.MathCheckOFF = _libsbml.MathCheckOFF

Definition at line 6065 of file libsbml.py.

libsbml.MathCheckON = _libsbml.MathCheckON

Definition at line 6064 of file libsbml.py.

libsbml.MathResultMustBeNumeric = _libsbml.MathResultMustBeNumeric

Definition at line 30556 of file libsbml.py.

libsbml.MetaIdNotValidAttribute = _libsbml.MetaIdNotValidAttribute

Definition at line 30775 of file libsbml.py.

libsbml.MissingAnnotationNamespace = _libsbml.MissingAnnotationNamespace

Definition at line 30570 of file libsbml.py.

libsbml.MissingEventAssignment = _libsbml.MissingEventAssignment

Definition at line 30693 of file libsbml.py.

libsbml.MissingModel = _libsbml.MissingModel

Definition at line 30614 of file libsbml.py.

libsbml.MissingOrInconsistentLevel = _libsbml.MissingOrInconsistentLevel

Definition at line 30611 of file libsbml.py.

libsbml.MissingOrInconsistentVersion = _libsbml.MissingOrInconsistentVersion

Definition at line 30612 of file libsbml.py.

libsbml.MissingSpeciesCompartment = _libsbml.MissingSpeciesCompartment

Definition at line 30658 of file libsbml.py.

libsbml.MissingTriggerInEvent = _libsbml.MissingTriggerInEvent

Definition at line 30691 of file libsbml.py.

libsbml.MissingXMLAttributeValue = _libsbml.MissingXMLAttributeValue

Definition at line 29466 of file libsbml.py.

libsbml.MissingXMLDecl = _libsbml.MissingXMLDecl

Definition at line 29449 of file libsbml.py.

libsbml.MissingXMLElements = _libsbml.MissingXMLElements

Definition at line 29482 of file libsbml.py.

libsbml.MissingXMLEncoding = _libsbml.MissingXMLEncoding

Definition at line 29450 of file libsbml.py.

libsbml.MissingXMLRequiredAttribute = _libsbml.MissingXMLRequiredAttribute

Definition at line 29463 of file libsbml.py.

libsbml.MODEL_QUALIFIER = _libsbml.MODEL_QUALIFIER

Definition at line 31417 of file libsbml.py.

libsbml.ModelSBOBranchChangedBeyondL2v2 = _libsbml.ModelSBOBranchChangedBeyondL2v2

Definition at line 30732 of file libsbml.py.

libsbml.ModelSBOBranchChangedBeyondL2v3 = _libsbml.ModelSBOBranchChangedBeyondL2v3

Definition at line 30742 of file libsbml.py.

libsbml.ModelSBOBranchChangedInL2v4 = _libsbml.ModelSBOBranchChangedInL2v4

Definition at line 30751 of file libsbml.py.

libsbml.MultipleAssignmentOrRateRules = _libsbml.MultipleAssignmentOrRateRules

Definition at line 30562 of file libsbml.py.

libsbml.MultipleEventAssignmentsForId = _libsbml.MultipleEventAssignmentsForId

Definition at line 30563 of file libsbml.py.

libsbml.MultipleInitAssignments = _libsbml.MultipleInitAssignments

Definition at line 30662 of file libsbml.py.

libsbml.MultiplierNotValidAttribute = _libsbml.MultiplierNotValidAttribute

Definition at line 30795 of file libsbml.py.

libsbml.MultSpeciesSameTypeInCompartment = _libsbml.MultSpeciesSameTypeInCompartment

Definition at line 30657 of file libsbml.py.

libsbml.NameNotValidAttribute = _libsbml.NameNotValidAttribute

Definition at line 30792 of file libsbml.py.

libsbml.NeedCompartmentIfHaveSpecies = _libsbml.NeedCompartmentIfHaveSpecies

Definition at line 30617 of file libsbml.py.

libsbml.NoCompartmentTypeInL1 = _libsbml.NoCompartmentTypeInL1

Definition at line 30710 of file libsbml.py.

libsbml.NoCompartmentTypeInL2v1 = _libsbml.NoCompartmentTypeInL2v1

Definition at line 30722 of file libsbml.py.

libsbml.NoConcentrationInZeroD = _libsbml.NoConcentrationInZeroD

Definition at line 30648 of file libsbml.py.

libsbml.NoConstraintsInL1 = _libsbml.NoConstraintsInL1

Definition at line 30707 of file libsbml.py.

libsbml.NoConstraintsInL2v1 = _libsbml.NoConstraintsInL2v1

Definition at line 30719 of file libsbml.py.

libsbml.NoDelayedEventAssignmentInL2v1 = _libsbml.NoDelayedEventAssignmentInL2v1

Definition at line 30725 of file libsbml.py.

libsbml.NoDelayedEventAssignmentInL2v2 = _libsbml.NoDelayedEventAssignmentInL2v2

Definition at line 30731 of file libsbml.py.

libsbml.NoDelayedEventAssignmentInL2v3 = _libsbml.NoDelayedEventAssignmentInL2v3

Definition at line 30741 of file libsbml.py.

libsbml.NoEventsInL1 = _libsbml.NoEventsInL1

Definition at line 30705 of file libsbml.py.

libsbml.NoEventTimeUnitsInL2v3 = _libsbml.NoEventTimeUnitsInL2v3

Definition at line 30740 of file libsbml.py.

libsbml.NoEventTimeUnitsInL2v4 = _libsbml.NoEventTimeUnitsInL2v4

Definition at line 30750 of file libsbml.py.

libsbml.NoFancyStoichiometryMathInL1 = _libsbml.NoFancyStoichiometryMathInL1

Definition at line 30712 of file libsbml.py.

libsbml.NoFunctionDefinitionsInL1 = _libsbml.NoFunctionDefinitionsInL1

Definition at line 30706 of file libsbml.py.

libsbml.NoIdOnSpeciesReferenceInL2v1 = _libsbml.NoIdOnSpeciesReferenceInL2v1

Definition at line 30724 of file libsbml.py.

libsbml.NoInitialAssignmentsInL1 = _libsbml.NoInitialAssignmentsInL1

Definition at line 30708 of file libsbml.py.

libsbml.NoInitialAssignmentsInL2v1 = _libsbml.NoInitialAssignmentsInL2v1

Definition at line 30720 of file libsbml.py.

libsbml.NoKineticLawSubstanceUnitsInL2v2 = _libsbml.NoKineticLawSubstanceUnitsInL2v2

Definition at line 30730 of file libsbml.py.

libsbml.NoKineticLawSubstanceUnitsInL2v3 = _libsbml.NoKineticLawSubstanceUnitsInL2v3

Definition at line 30738 of file libsbml.py.

libsbml.NoKineticLawSubstanceUnitsInL2v4 = _libsbml.NoKineticLawSubstanceUnitsInL2v4

Definition at line 30748 of file libsbml.py.

libsbml.NoKineticLawTimeUnitsInL2v2 = _libsbml.NoKineticLawTimeUnitsInL2v2

Definition at line 30729 of file libsbml.py.

libsbml.NoKineticLawTimeUnitsInL2v3 = _libsbml.NoKineticLawTimeUnitsInL2v3

Definition at line 30737 of file libsbml.py.

libsbml.NoKineticLawTimeUnitsInL2v4 = _libsbml.NoKineticLawTimeUnitsInL2v4

Definition at line 30747 of file libsbml.py.

libsbml.NonBoundarySpeciesAssignedAndUsed = _libsbml.NonBoundarySpeciesAssignedAndUsed

Definition at line 30654 of file libsbml.py.

libsbml.NonConstantLocalParameter = _libsbml.NonConstantLocalParameter

Definition at line 30687 of file libsbml.py.

libsbml.NonConstantSpeciesUsed = _libsbml.NonConstantSpeciesUsed

Definition at line 30655 of file libsbml.py.

libsbml.NoNon3DComparmentsInL1 = _libsbml.NoNon3DComparmentsInL1

Definition at line 30711 of file libsbml.py.

libsbml.NoNonIntegerStoichiometryInL1 = _libsbml.NoNonIntegerStoichiometryInL1

Definition at line 30713 of file libsbml.py.

libsbml.NoReactantsOrProducts = _libsbml.NoReactantsOrProducts

Definition at line 30676 of file libsbml.py.

libsbml.NoSBOTermsInL1 = _libsbml.NoSBOTermsInL1

Definition at line 30717 of file libsbml.py.

libsbml.NoSBOTermsInL2v1 = _libsbml.NoSBOTermsInL2v1

Definition at line 30723 of file libsbml.py.

libsbml.NoSpatialUnitsInZeroD = _libsbml.NoSpatialUnitsInZeroD

Definition at line 30647 of file libsbml.py.

libsbml.NoSpeciesSpatialSizeUnitsInL1 = _libsbml.NoSpeciesSpatialSizeUnitsInL1

Definition at line 30716 of file libsbml.py.

libsbml.NoSpeciesSpatialSizeUnitsInL2v3 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v3

Definition at line 30739 of file libsbml.py.

libsbml.NoSpeciesSpatialSizeUnitsInL2v4 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v4

Definition at line 30749 of file libsbml.py.

libsbml.NoSpeciesTypeInL2v1 = _libsbml.NoSpeciesTypeInL2v1

Definition at line 30721 of file libsbml.py.

libsbml.NoSpeciesTypesInL1 = _libsbml.NoSpeciesTypesInL1

Definition at line 30709 of file libsbml.py.

libsbml.NotesContainsDOCTYPE = _libsbml.NotesContainsDOCTYPE

Definition at line 30608 of file libsbml.py.

libsbml.NotesContainsXMLDecl = _libsbml.NotesContainsXMLDecl

Definition at line 30607 of file libsbml.py.

libsbml.NotesNotInXHTMLNamespace = _libsbml.NotesNotInXHTMLNamespace

Definition at line 30606 of file libsbml.py.

libsbml.NoTimeSymbolInFunctionDef = _libsbml.NoTimeSymbolInFunctionDef

Definition at line 30765 of file libsbml.py.

libsbml.NotSchemaConformant = _libsbml.NotSchemaConformant

Definition at line 30539 of file libsbml.py.

libsbml.NotUTF8 = _libsbml.NotUTF8

Definition at line 30537 of file libsbml.py.

libsbml.NoUnitMultipliersOrOffsetsInL1 = _libsbml.NoUnitMultipliersOrOffsetsInL1

Definition at line 30714 of file libsbml.py.

libsbml.NoUnitOffsetInL2v2 = _libsbml.NoUnitOffsetInL2v2

Definition at line 30728 of file libsbml.py.

libsbml.NoUnitOffsetInL2v3 = _libsbml.NoUnitOffsetInL2v3

Definition at line 30736 of file libsbml.py.

libsbml.NoUnitOffsetInL2v4 = _libsbml.NoUnitOffsetInL2v4

Definition at line 30746 of file libsbml.py.

libsbml.NumericOpsNeedNumericArgs = _libsbml.NumericOpsNeedNumericArgs

Definition at line 30549 of file libsbml.py.

libsbml.ObseleteSBOTerm = _libsbml.ObseleteSBOTerm

Definition at line 30771 of file libsbml.py.

libsbml.OffsetNoLongerValid = _libsbml.OffsetNoLongerValid

Definition at line 30633 of file libsbml.py.

libsbml.OffsetNotValidAttribute = _libsbml.OffsetNotValidAttribute

Definition at line 30796 of file libsbml.py.

libsbml.OpsNeedCorrectNumberOfArgs = _libsbml.OpsNeedCorrectNumberOfArgs

Definition at line 30557 of file libsbml.py.

libsbml.OverdeterCheckOFF = _libsbml.OverdeterCheckOFF

Definition at line 6069 of file libsbml.py.

libsbml.OverdeterCheckON = _libsbml.OverdeterCheckON

Definition at line 6068 of file libsbml.py.

libsbml.OverdeterminedSystem = _libsbml.OverdeterminedSystem

Definition at line 30588 of file libsbml.py.

libsbml.ParameterShouldHaveUnits = _libsbml.ParameterShouldHaveUnits

Definition at line 30701 of file libsbml.py.

libsbml.PieceNeedsBoolean = _libsbml.PieceNeedsBoolean

Definition at line 30552 of file libsbml.py.

libsbml.PiecewiseNeedsConsistentTypes = _libsbml.PiecewiseNeedsConsistentTypes

Definition at line 30551 of file libsbml.py.

libsbml.PracticeCheckOFF = _libsbml.PracticeCheckOFF

Definition at line 6071 of file libsbml.py.

libsbml.PracticeCheckON = _libsbml.PracticeCheckON

Definition at line 6070 of file libsbml.py.

libsbml.RateRuleCompartmentMismatch = _libsbml.RateRuleCompartmentMismatch

Definition at line 30580 of file libsbml.py.

libsbml.RateRuleForConstantEntity = _libsbml.RateRuleForConstantEntity

Definition at line 30667 of file libsbml.py.

libsbml.RateRuleParameterMismatch = _libsbml.RateRuleParameterMismatch

Definition at line 30582 of file libsbml.py.

libsbml.RateRuleSpeciesMismatch = _libsbml.RateRuleSpeciesMismatch

Definition at line 30581 of file libsbml.py.

libsbml.RecursiveCompartmentContainment = _libsbml.RecursiveCompartmentContainment

Definition at line 30639 of file libsbml.py.

libsbml.RecursiveFunctionDefinition = _libsbml.RecursiveFunctionDefinition

Definition at line 30620 of file libsbml.py.

libsbml.RepeatedRule10304 = _libsbml.RepeatedRule10304

Definition at line 30668 of file libsbml.py.

libsbml.RepeatedRule20611 = _libsbml.RepeatedRule20611

Definition at line 30682 of file libsbml.py.

libsbml.RULE_TYPE_INVALID = _libsbml.RULE_TYPE_INVALID

Definition at line 16210 of file libsbml.py.

libsbml.RULE_TYPE_RATE = _libsbml.RULE_TYPE_RATE

Definition at line 16208 of file libsbml.py.

libsbml.RULE_TYPE_SCALAR = _libsbml.RULE_TYPE_SCALAR

Definition at line 16209 of file libsbml.py.

libsbml.SBML_ALGEBRAIC_RULE = _libsbml.SBML_ALGEBRAIC_RULE

Definition at line 1390 of file libsbml.py.

libsbml.SBML_ASSIGNMENT_RULE = _libsbml.SBML_ASSIGNMENT_RULE

Definition at line 1391 of file libsbml.py.

libsbml.SBML_COMPARTMENT = _libsbml.SBML_COMPARTMENT

Definition at line 1370 of file libsbml.py.

libsbml.SBML_COMPARTMENT_TYPE = _libsbml.SBML_COMPARTMENT_TYPE

Definition at line 1371 of file libsbml.py.

libsbml.SBML_COMPARTMENT_VOLUME_RULE = _libsbml.SBML_COMPARTMENT_VOLUME_RULE

Definition at line 1394 of file libsbml.py.

libsbml.SBML_CONSTRAINT = _libsbml.SBML_CONSTRAINT

Definition at line 1372 of file libsbml.py.

libsbml.SBML_DEFAULT_LEVEL = _libsbml.SBML_DEFAULT_LEVEL

Definition at line 25166 of file libsbml.py.

libsbml.SBML_DEFAULT_VERSION = _libsbml.SBML_DEFAULT_VERSION

Definition at line 25167 of file libsbml.py.

libsbml.SBML_DELAY = _libsbml.SBML_DELAY

Definition at line 1397 of file libsbml.py.

libsbml.SBML_DOCUMENT = _libsbml.SBML_DOCUMENT

Definition at line 1373 of file libsbml.py.

libsbml.SBML_EVENT = _libsbml.SBML_EVENT

Definition at line 1374 of file libsbml.py.

libsbml.SBML_EVENT_ASSIGNMENT = _libsbml.SBML_EVENT_ASSIGNMENT

Definition at line 1375 of file libsbml.py.

libsbml.SBML_FORMULA_UNITS_DATA = _libsbml.SBML_FORMULA_UNITS_DATA

Definition at line 1399 of file libsbml.py.

libsbml.SBML_FUNCTION_DEFINITION = _libsbml.SBML_FUNCTION_DEFINITION

Definition at line 1376 of file libsbml.py.

libsbml.SBML_INITIAL_ASSIGNMENT = _libsbml.SBML_INITIAL_ASSIGNMENT

Definition at line 1377 of file libsbml.py.

libsbml.SBML_KINETIC_LAW = _libsbml.SBML_KINETIC_LAW

Definition at line 1378 of file libsbml.py.

libsbml.SBML_LIST_FORMULA_UNITS_DATA = _libsbml.SBML_LIST_FORMULA_UNITS_DATA

Definition at line 1400 of file libsbml.py.

libsbml.SBML_LIST_OF = _libsbml.SBML_LIST_OF

Definition at line 1379 of file libsbml.py.

libsbml.SBML_LISTOF_COMPARTMENT_TYPES = _libsbml.SBML_LISTOF_COMPARTMENT_TYPES

Definition at line 1402 of file libsbml.py.

libsbml.SBML_LISTOF_COMPARTMENTS = _libsbml.SBML_LISTOF_COMPARTMENTS

Definition at line 1401 of file libsbml.py.

libsbml.SBML_LISTOF_CONSTRAINTS = _libsbml.SBML_LISTOF_CONSTRAINTS

Definition at line 1403 of file libsbml.py.

libsbml.SBML_LISTOF_EVENT_ASSIGNMENTS = _libsbml.SBML_LISTOF_EVENT_ASSIGNMENTS

Definition at line 1405 of file libsbml.py.

libsbml.SBML_LISTOF_EVENTS = _libsbml.SBML_LISTOF_EVENTS

Definition at line 1404 of file libsbml.py.

libsbml.SBML_LISTOF_FUNCTION_DEFINITIONS = _libsbml.SBML_LISTOF_FUNCTION_DEFINITIONS

Definition at line 1406 of file libsbml.py.

libsbml.SBML_LISTOF_INITIAL_ASSIGNMENTS = _libsbml.SBML_LISTOF_INITIAL_ASSIGNMENTS

Definition at line 1407 of file libsbml.py.

libsbml.SBML_LISTOF_PARAMETERS = _libsbml.SBML_LISTOF_PARAMETERS

Definition at line 1408 of file libsbml.py.

libsbml.SBML_LISTOF_REACTIONS = _libsbml.SBML_LISTOF_REACTIONS

Definition at line 1409 of file libsbml.py.

libsbml.SBML_LISTOF_RULES = _libsbml.SBML_LISTOF_RULES

Definition at line 1410 of file libsbml.py.

libsbml.SBML_LISTOF_SPECIES = _libsbml.SBML_LISTOF_SPECIES

Definition at line 1411 of file libsbml.py.

libsbml.SBML_LISTOF_SPECIES_REFERENCES = _libsbml.SBML_LISTOF_SPECIES_REFERENCES

Definition at line 1412 of file libsbml.py.

libsbml.SBML_LISTOF_SPECIES_TYPES = _libsbml.SBML_LISTOF_SPECIES_TYPES

Definition at line 1413 of file libsbml.py.

libsbml.SBML_LISTOF_UNIT_DEFINITIONS = _libsbml.SBML_LISTOF_UNIT_DEFINITIONS

Definition at line 1414 of file libsbml.py.

libsbml.SBML_LISTOF_UNITS = _libsbml.SBML_LISTOF_UNITS

Definition at line 1415 of file libsbml.py.

libsbml.SBML_MODEL = _libsbml.SBML_MODEL

Definition at line 1380 of file libsbml.py.

libsbml.SBML_MODIFIER_SPECIES_REFERENCE = _libsbml.SBML_MODIFIER_SPECIES_REFERENCE

Definition at line 1387 of file libsbml.py.

libsbml.SBML_PARAMETER = _libsbml.SBML_PARAMETER

Definition at line 1381 of file libsbml.py.

libsbml.SBML_PARAMETER_RULE = _libsbml.SBML_PARAMETER_RULE

Definition at line 1395 of file libsbml.py.

libsbml.SBML_RATE_RULE = _libsbml.SBML_RATE_RULE

Definition at line 1392 of file libsbml.py.

libsbml.SBML_REACTION = _libsbml.SBML_REACTION

Definition at line 1382 of file libsbml.py.

libsbml.SBML_RULE = _libsbml.SBML_RULE

Definition at line 1383 of file libsbml.py.

libsbml.SBML_SPECIES = _libsbml.SBML_SPECIES

Definition at line 1384 of file libsbml.py.

libsbml.SBML_SPECIES_CONCENTRATION_RULE = _libsbml.SBML_SPECIES_CONCENTRATION_RULE

Definition at line 1393 of file libsbml.py.

libsbml.SBML_SPECIES_REFERENCE = _libsbml.SBML_SPECIES_REFERENCE

Definition at line 1385 of file libsbml.py.

libsbml.SBML_SPECIES_TYPE = _libsbml.SBML_SPECIES_TYPE

Definition at line 1386 of file libsbml.py.

libsbml.SBML_STOICHIOMETRY_MATH = _libsbml.SBML_STOICHIOMETRY_MATH

Definition at line 1398 of file libsbml.py.

libsbml.SBML_TRIGGER = _libsbml.SBML_TRIGGER

Definition at line 1396 of file libsbml.py.

libsbml.SBML_UNIT = _libsbml.SBML_UNIT

Definition at line 1389 of file libsbml.py.

libsbml.SBML_UNIT_DEFINITION = _libsbml.SBML_UNIT_DEFINITION

Definition at line 1388 of file libsbml.py.

libsbml.SBML_UNKNOWN = _libsbml.SBML_UNKNOWN

Definition at line 1369 of file libsbml.py.

libsbml.SBML_XMLNS_L1 = _libsbml.SBML_XMLNS_L1

Definition at line 25168 of file libsbml.py.

libsbml.SBML_XMLNS_L2V1 = _libsbml.SBML_XMLNS_L2V1

Definition at line 25169 of file libsbml.py.

libsbml.SBML_XMLNS_L2V2 = _libsbml.SBML_XMLNS_L2V2

Definition at line 25170 of file libsbml.py.

libsbml.SBML_XMLNS_L2V3 = _libsbml.SBML_XMLNS_L2V3

Definition at line 25171 of file libsbml.py.

libsbml.SBML_XMLNS_L2V4 = _libsbml.SBML_XMLNS_L2V4

Definition at line 25172 of file libsbml.py.

libsbml.SBMLCheckOFF = _libsbml.SBMLCheckOFF

Definition at line 6061 of file libsbml.py.

libsbml.SBMLCheckON = _libsbml.SBMLCheckON

Definition at line 6060 of file libsbml.py.

libsbml.SBMLCodesUpperBound = _libsbml.SBMLCodesUpperBound

Definition at line 30797 of file libsbml.py.

libsbml.SBMLNamespaceInAnnotation = _libsbml.SBMLNamespaceInAnnotation

Definition at line 30572 of file libsbml.py.

libsbml.SBOCheckOFF = _libsbml.SBOCheckOFF

Definition at line 6063 of file libsbml.py.

libsbml.SBOCheckON = _libsbml.SBOCheckON

Definition at line 6062 of file libsbml.py.

libsbml.SBOTermNotUniversalInL2v2 = _libsbml.SBOTermNotUniversalInL2v2

Definition at line 30727 of file libsbml.py.

libsbml.SBOTermNotValidAttributeBeforeL2V2 = _libsbml.SBOTermNotValidAttributeBeforeL2V2

Definition at line 30782 of file libsbml.py.

libsbml.SBOTermNotValidAttributeBeforeL2V3 = _libsbml.SBOTermNotValidAttributeBeforeL2V3

Definition at line 30776 of file libsbml.py.

libsbml.SpatialSizeUnitsNotValidAttribute = _libsbml.SpatialSizeUnitsNotValidAttribute

Definition at line 30788 of file libsbml.py.

libsbml.SpatialSizeUnitsRemoved = _libsbml.SpatialSizeUnitsRemoved

Definition at line 30659 of file libsbml.py.

libsbml.SpatialUnitsInOneD = _libsbml.SpatialUnitsInOneD

Definition at line 30649 of file libsbml.py.

libsbml.SpatialUnitsInThreeD = _libsbml.SpatialUnitsInThreeD

Definition at line 30651 of file libsbml.py.

libsbml.SpatialUnitsInTwoD = _libsbml.SpatialUnitsInTwoD

Definition at line 30650 of file libsbml.py.

libsbml.SpeciesCompartmentRequiredInL1 = _libsbml.SpeciesCompartmentRequiredInL1

Definition at line 30715 of file libsbml.py.

libsbml.SpeciesTypeNotValidAttribute = _libsbml.SpeciesTypeNotValidAttribute

Definition at line 30789 of file libsbml.py.

libsbml.SpeciesTypeNotValidComponent = _libsbml.SpeciesTypeNotValidComponent

Definition at line 30793 of file libsbml.py.

libsbml.StoichiometryMathNotValidComponent = _libsbml.StoichiometryMathNotValidComponent

Definition at line 30794 of file libsbml.py.

libsbml.StrictSBORequiredInL2v2 = _libsbml.StrictSBORequiredInL2v2

Definition at line 30734 of file libsbml.py.

libsbml.StrictSBORequiredInL2v3 = _libsbml.StrictSBORequiredInL2v3

Definition at line 30744 of file libsbml.py.

libsbml.StrictUnitsRequiredInL1 = _libsbml.StrictUnitsRequiredInL1

Definition at line 30718 of file libsbml.py.

libsbml.StrictUnitsRequiredInL2v1 = _libsbml.StrictUnitsRequiredInL2v1

Definition at line 30726 of file libsbml.py.

libsbml.StrictUnitsRequiredInL2v2 = _libsbml.StrictUnitsRequiredInL2v2

Definition at line 30733 of file libsbml.py.

libsbml.StrictUnitsRequiredInL2v3 = _libsbml.StrictUnitsRequiredInL2v3

Definition at line 30743 of file libsbml.py.

libsbml.SubsUnitsAllowedInKL = _libsbml.SubsUnitsAllowedInKL

Definition at line 30755 of file libsbml.py.

libsbml.SubsUnitsNoLongerValid = _libsbml.SubsUnitsNoLongerValid

Definition at line 30688 of file libsbml.py.

libsbml.TimeUnitsAllowedInKL = _libsbml.TimeUnitsAllowedInKL

Definition at line 30756 of file libsbml.py.

libsbml.TimeUnitsEvent = _libsbml.TimeUnitsEvent

Definition at line 30694 of file libsbml.py.

libsbml.TimeUnitsNoLongerValid = _libsbml.TimeUnitsNoLongerValid

Definition at line 30689 of file libsbml.py.

libsbml.TimeUnitsRemoved = _libsbml.TimeUnitsRemoved

Definition at line 30758 of file libsbml.py.

libsbml.TriggerMathNotBoolean = _libsbml.TriggerMathNotBoolean

Definition at line 30692 of file libsbml.py.

libsbml.UnclosedXMLToken = _libsbml.UnclosedXMLToken

Definition at line 29455 of file libsbml.py.

libsbml.UndeclaredSpeciesInStoichMath = _libsbml.UndeclaredSpeciesInStoichMath

Definition at line 30690 of file libsbml.py.

libsbml.UndeclaredSpeciesRef = _libsbml.UndeclaredSpeciesRef

Definition at line 30684 of file libsbml.py.

libsbml.UndeclaredUnits = _libsbml.UndeclaredUnits

Definition at line 30769 of file libsbml.py.

libsbml.UndefinedOutsideCompartment = _libsbml.UndefinedOutsideCompartment

Definition at line 30638 of file libsbml.py.

libsbml.UndefinedXMLEntity = _libsbml.UndefinedXMLEntity

Definition at line 29459 of file libsbml.py.

libsbml.UninterpretableXMLContent = _libsbml.UninterpretableXMLContent

Definition at line 29475 of file libsbml.py.

libsbml.UNIT_KIND_AMPERE = _libsbml.UNIT_KIND_AMPERE

Definition at line 7748 of file libsbml.py.

libsbml.UNIT_KIND_BECQUEREL = _libsbml.UNIT_KIND_BECQUEREL

Definition at line 7749 of file libsbml.py.

libsbml.UNIT_KIND_CANDELA = _libsbml.UNIT_KIND_CANDELA

Definition at line 7750 of file libsbml.py.

libsbml.UNIT_KIND_CELSIUS = _libsbml.UNIT_KIND_CELSIUS

Definition at line 7751 of file libsbml.py.

libsbml.UNIT_KIND_COULOMB = _libsbml.UNIT_KIND_COULOMB

Definition at line 7752 of file libsbml.py.

libsbml.UNIT_KIND_DIMENSIONLESS = _libsbml.UNIT_KIND_DIMENSIONLESS

Definition at line 7753 of file libsbml.py.

libsbml.UNIT_KIND_FARAD = _libsbml.UNIT_KIND_FARAD

Definition at line 7754 of file libsbml.py.

libsbml.UNIT_KIND_GRAM = _libsbml.UNIT_KIND_GRAM

Definition at line 7755 of file libsbml.py.

libsbml.UNIT_KIND_GRAY = _libsbml.UNIT_KIND_GRAY

Definition at line 7756 of file libsbml.py.

libsbml.UNIT_KIND_HENRY = _libsbml.UNIT_KIND_HENRY

Definition at line 7757 of file libsbml.py.

libsbml.UNIT_KIND_HERTZ = _libsbml.UNIT_KIND_HERTZ

Definition at line 7758 of file libsbml.py.

libsbml.UNIT_KIND_INVALID = _libsbml.UNIT_KIND_INVALID

Definition at line 7783 of file libsbml.py.

libsbml.UNIT_KIND_ITEM = _libsbml.UNIT_KIND_ITEM

Definition at line 7759 of file libsbml.py.

libsbml.UNIT_KIND_JOULE = _libsbml.UNIT_KIND_JOULE

Definition at line 7760 of file libsbml.py.

libsbml.UNIT_KIND_KATAL = _libsbml.UNIT_KIND_KATAL

Definition at line 7761 of file libsbml.py.

libsbml.UNIT_KIND_KELVIN = _libsbml.UNIT_KIND_KELVIN

Definition at line 7762 of file libsbml.py.

libsbml.UNIT_KIND_KILOGRAM = _libsbml.UNIT_KIND_KILOGRAM

Definition at line 7763 of file libsbml.py.

libsbml.UNIT_KIND_LITER = _libsbml.UNIT_KIND_LITER

Definition at line 7764 of file libsbml.py.

libsbml.UNIT_KIND_LITRE = _libsbml.UNIT_KIND_LITRE

Definition at line 7765 of file libsbml.py.

libsbml.UNIT_KIND_LUMEN = _libsbml.UNIT_KIND_LUMEN

Definition at line 7766 of file libsbml.py.

libsbml.UNIT_KIND_LUX = _libsbml.UNIT_KIND_LUX

Definition at line 7767 of file libsbml.py.

libsbml.UNIT_KIND_METER = _libsbml.UNIT_KIND_METER

Definition at line 7768 of file libsbml.py.

libsbml.UNIT_KIND_METRE = _libsbml.UNIT_KIND_METRE

Definition at line 7769 of file libsbml.py.

libsbml.UNIT_KIND_MOLE = _libsbml.UNIT_KIND_MOLE

Definition at line 7770 of file libsbml.py.

libsbml.UNIT_KIND_NEWTON = _libsbml.UNIT_KIND_NEWTON

Definition at line 7771 of file libsbml.py.

libsbml.UNIT_KIND_OHM = _libsbml.UNIT_KIND_OHM

Definition at line 7772 of file libsbml.py.

libsbml.UNIT_KIND_PASCAL = _libsbml.UNIT_KIND_PASCAL

Definition at line 7773 of file libsbml.py.

libsbml.UNIT_KIND_RADIAN = _libsbml.UNIT_KIND_RADIAN

Definition at line 7774 of file libsbml.py.

libsbml.UNIT_KIND_SECOND = _libsbml.UNIT_KIND_SECOND

Definition at line 7775 of file libsbml.py.

libsbml.UNIT_KIND_SIEMENS = _libsbml.UNIT_KIND_SIEMENS

Definition at line 7776 of file libsbml.py.

libsbml.UNIT_KIND_SIEVERT = _libsbml.UNIT_KIND_SIEVERT

Definition at line 7777 of file libsbml.py.

libsbml.UNIT_KIND_STERADIAN = _libsbml.UNIT_KIND_STERADIAN

Definition at line 7778 of file libsbml.py.

libsbml.UNIT_KIND_TESLA = _libsbml.UNIT_KIND_TESLA

Definition at line 7779 of file libsbml.py.

libsbml.UNIT_KIND_VOLT = _libsbml.UNIT_KIND_VOLT

Definition at line 7780 of file libsbml.py.

libsbml.UNIT_KIND_WATT = _libsbml.UNIT_KIND_WATT

Definition at line 7781 of file libsbml.py.

libsbml.UNIT_KIND_WEBER = _libsbml.UNIT_KIND_WEBER

Definition at line 7782 of file libsbml.py.

libsbml.UnitsCheckOFF = _libsbml.UnitsCheckOFF

Definition at line 6067 of file libsbml.py.

libsbml.UnitsCheckON = _libsbml.UnitsCheckON

Definition at line 6066 of file libsbml.py.

libsbml.UnitsNotValidAttribute = _libsbml.UnitsNotValidAttribute

Definition at line 30786 of file libsbml.py.

libsbml.UNKNOWN_QUALIFIER = _libsbml.UNKNOWN_QUALIFIER

Definition at line 31419 of file libsbml.py.

libsbml.UnknownError = _libsbml.UnknownError

Definition at line 30536 of file libsbml.py.

libsbml.UnrecognisedSBOTerm = _libsbml.UnrecognisedSBOTerm

Definition at line 30770 of file libsbml.py.

libsbml.UnrecognizedElement = _libsbml.UnrecognizedElement

Definition at line 30538 of file libsbml.py.

libsbml.UnrecognizedXMLElement = _libsbml.UnrecognizedXMLElement

Definition at line 29469 of file libsbml.py.

libsbml.UnrecognizedXMLParserCode = _libsbml.UnrecognizedXMLParserCode

Definition at line 29447 of file libsbml.py.

libsbml.ValuesFromTriggerTimeNeedDelay = _libsbml.ValuesFromTriggerTimeNeedDelay

Definition at line 30696 of file libsbml.py.

libsbml.VariableNotValidAttribute = _libsbml.VariableNotValidAttribute

Definition at line 30785 of file libsbml.py.

libsbml.VolumeLitreDefExponentNotOne = _libsbml.VolumeLitreDefExponentNotOne

Definition at line 30629 of file libsbml.py.

libsbml.VolumeMetreDefExponentNot3 = _libsbml.VolumeMetreDefExponentNot3

Definition at line 30630 of file libsbml.py.

libsbml.XMLAttributeTypeMismatch = _libsbml.XMLAttributeTypeMismatch

Definition at line 29464 of file libsbml.py.

libsbml.XMLBadColon = _libsbml.XMLBadColon

Definition at line 29481 of file libsbml.py.

libsbml.XMLBadNumber = _libsbml.XMLBadNumber

Definition at line 29480 of file libsbml.py.

libsbml.XMLBadUTF8Content = _libsbml.XMLBadUTF8Content

Definition at line 29465 of file libsbml.py.

libsbml.XMLContentEmpty = _libsbml.XMLContentEmpty

Definition at line 29483 of file libsbml.py.

libsbml.XMLEmptyValueNotPermitted = _libsbml.XMLEmptyValueNotPermitted

Definition at line 29479 of file libsbml.py.

libsbml.XMLErrorCodesUpperBound = _libsbml.XMLErrorCodesUpperBound

Definition at line 29484 of file libsbml.py.

libsbml.XMLExpectedQuotedString = _libsbml.XMLExpectedQuotedString

Definition at line 29478 of file libsbml.py.

libsbml.XMLFileOperationError = _libsbml.XMLFileOperationError

Definition at line 29444 of file libsbml.py.

libsbml.XMLFileUnreadable = _libsbml.XMLFileUnreadable

Definition at line 29442 of file libsbml.py.

libsbml.XMLFileUnwritable = _libsbml.XMLFileUnwritable

Definition at line 29443 of file libsbml.py.

libsbml.XMLNetworkAccessError = _libsbml.XMLNetworkAccessError

Definition at line 29445 of file libsbml.py.

libsbml.XMLOutOfMemory = _libsbml.XMLOutOfMemory

Definition at line 29441 of file libsbml.py.

libsbml.XMLTagMismatch = _libsbml.XMLTagMismatch

Definition at line 29457 of file libsbml.py.

libsbml.XMLTranscoderError = _libsbml.XMLTranscoderError

Definition at line 29448 of file libsbml.py.

libsbml.XMLUnexpectedEOF = _libsbml.XMLUnexpectedEOF

Definition at line 29472 of file libsbml.py.

libsbml.XMLUnknownError = _libsbml.XMLUnknownError

Definition at line 29440 of file libsbml.py.

libsbml.ZeroDCompartmentContainment = _libsbml.ZeroDCompartmentContainment

Definition at line 30640 of file libsbml.py.

libsbml.ZeroDimensionalCompartmentConst = _libsbml.ZeroDimensionalCompartmentConst

Definition at line 30637 of file libsbml.py.

libsbml.ZeroDimensionalCompartmentSize = _libsbml.ZeroDimensionalCompartmentSize

Definition at line 30635 of file libsbml.py.

libsbml.ZeroDimensionalCompartmentUnits = _libsbml.ZeroDimensionalCompartmentUnits

Definition at line 30636 of file libsbml.py.

Package libsbml

Classes

Functions

Variables

Function Documentation

Variable Documentation