Classes | |
| class | _object |
| class | AlgebraicRule |
| LibSBML implementation of SBML's AlgebraicRule construct. More... | |
| class | AssignmentRule |
| LibSBML implementation of SBML's AssignmentRule construct. More... | |
| class | ASTNode |
| A node in the Abstract Syntax Tree (AST) representation of a mathematical expression. More... | |
| class | ASTNodeList |
| class | Compartment |
| LibSBML implementation of SBML's Compartment construct. More... | |
| class | CompartmentType |
| LibSBML implementation of SBML's CompartmentType construct. More... | |
| class | Constraint |
| LibSBML implementation of SBML's Constraint construct. More... | |
| class | CVTerm |
| Representation of MIRIAM-compliant controlled vocabulary annotation. More... | |
| class | CVTermList |
| class | Date |
| Representation of MIRIAM-compliant dates used in ModelHistory. More... | |
| class | DateList |
| class | Delay |
| LibSBML implementation of SBML's Delay construct for Event. More... | |
| class | Event |
| LibSBML implementation of SBML's Event construct. More... | |
| class | EventAssignment |
| LibSBML implementation of SBML's EventAssignment construct for Event. More... | |
| class | FunctionDefinition |
| LibSBML implementation of SBML's FunctionDefinition construct. More... | |
| class | InitialAssignment |
| LibSBML implementation of SBML's InitialAssignment construct. More... | |
| class | KineticLaw |
| LibSBML implementation of SBML's KineticLaw construct. More... | |
| class | ListOf |
| Parent class for the various SBML 'ListOfXYZ' classes. More... | |
| class | ListOfCompartments |
| LibSBML implementation of SBML's ListOfCompartments construct. More... | |
| class | ListOfCompartmentTypes |
| LibSBML implementation of SBML's ListOfCompartmentTypes construct. More... | |
| class | ListOfConstraints |
| LibSBML implementation of SBML's ListOfConstraints construct. More... | |
| class | ListOfEventAssignments |
| LibSBML implementation of SBML's ListOfEventAssignments construct. More... | |
| class | ListOfEvents |
| LibSBML implementation of SBML's ListOfEvents construct. More... | |
| class | ListOfFunctionDefinitions |
| LibSBML implementation of SBML's ListOfFunctionDefinitions construct. More... | |
| class | ListOfInitialAssignments |
| LibSBML implementation of SBML's ListOfInitialAssignments construct. More... | |
| class | ListOfParameters |
| LibSBML implementation of SBML's ListOfParameters construct. More... | |
| class | ListOfReactions |
| LibSBML implementation of SBML's ListOfReactions construct. More... | |
| class | ListOfRules |
| LibSBML implementation of SBML's ListOfRules construct. More... | |
| class | ListOfSpecies |
| LibSBML implementation of SBML's ListOfSpecies construct. More... | |
| class | ListOfSpeciesReferences |
| LibSBML implementation of SBML's ListOfSpeciesReferences construct. More... | |
| class | ListOfSpeciesTypes |
| LibSBML implementation of SBML's ListOfSpeciesTypes construct. More... | |
| class | ListOfUnitDefinitions |
| LibSBML implementation of SBML's ListOfUnitDefinitions construct. More... | |
| class | ListOfUnits |
| LibSBML implementation of SBML's ListOfUnits construct. More... | |
| class | Model |
| LibSBML implementation of SBML's Model construct. More... | |
| class | ModelCreator |
| Representation of MIRIAM-compliant model creator data used in ModelHistory. More... | |
| class | ModelCreatorList |
| class | ModelHistory |
| Representation of MIRIAM-compliant model history data. More... | |
| class | ModifierSpeciesReference |
| LibSBML implementation of SBML's ModifierSpeciesReference construct. More... | |
| class | ostream |
| Proxy of C++ std.basic_ostream<(char)> class. More... | |
| class | ostringstream |
| Proxy of C++ std.basic_ostringstream<(char)> class. More... | |
| class | Parameter |
| LibSBML implementation of SBML's Parameter construct. More... | |
| class | RateRule |
| LibSBML implementation of SBML's RateRule construct. More... | |
| class | RDFAnnotationParser |
| Read/write/manipulate RDF annotations stored in SBML annotation elements. More... | |
| class | Reaction |
| LibSBML implementation of SBML's Reaction construct. More... | |
| class | Rule |
| LibSBML implementation of SBML's Rule construct. More... | |
| class | SBase |
| LibSBML implementation of SBase, the base class of all SBML objects. More... | |
| class | SBMLDocument |
| Container for an SBML document and interface for global operations on SBML documents. More... | |
| class | SBMLError |
| Representation of errors, warnings and other diagnostics. More... | |
| class | SBMLErrorLog |
| Log of errors and other events encountered during SBML processing. More... | |
| class | SBMLNamespaces |
| Class to store SBML level, version and namespace information. More... | |
| class | SBMLReader |
| Methods for reading SBML from files and text strings. More... | |
| class | SBMLWriter |
| Methods for writing SBML to files and text strings. More... | |
| class | SBO |
| Methods for interacting with Systems Biology Ontology (SBO) terms. More... | |
| class | SimpleSpeciesReference |
| LibSBML implementation of SBML's SimpleSpeciesReference construct. More... | |
| class | Species |
| LibSBML implementation of SBML's Species construct. More... | |
| class | SpeciesReference |
| LibSBML implementation of SBML's SpeciesReference construct. More... | |
| class | SpeciesType |
| LibSBML implementation of SBML's SpeciesType construct. More... | |
| class | StoichiometryMath |
| LibSBML implementation of SBML's StoichiometryMath construct. More... | |
| class | string |
| Proxy of C++ std.basic_string<(char)> class. More... | |
| class | SwigPyIterator |
| Proxy of C++ swig.SwigPyIterator class. More... | |
| class | SyntaxChecker |
| Methods for checking syntax of ids, metaids and units. More... | |
| class | Trigger |
| LibSBML implementation of SBML's Trigger construct for Event. More... | |
| class | Unit |
| LibSBML implementation of SBML's Unit construct. More... | |
| class | UnitDefinition |
| LibSBML implementation of SBML's UnitDefinition construct. More... | |
| class | XMLAttributes |
| Representation of attributes on an XML node. More... | |
| class | XMLError |
| Representation of errors, warnings and other diagnostics. More... | |
| class | XMLErrorLog |
| Log of errors and other events encountered while processing an XML file or data stream. More... | |
| class | XMLNamespaces |
| Representation of XML Namespaces. More... | |
| class | XMLNode |
| Representation of a node in an XML document tree. More... | |
| class | XMLOutputStream |
| class | XMLToken |
| Representation of a token in an XML stream. More... | |
| class | XMLTriple |
| Representation of a qualified XML name. More... | |
Functions | |
| def | ASTNode_true |
| def | conditional_abspath |
| def | endl |
| def | flush |
| def | formulaToString |
| def | getLibSBMLDottedVersion |
| def | getLibSBMLVersion |
| def | getLibSBMLVersionString |
| def | parseFormula |
| def | RDFAnnotationParser_createAnnotation |
| def | RDFAnnotationParser_createCVTerms |
| def | RDFAnnotationParser_createRDFAnnotation |
| def | RDFAnnotationParser_createRDFDescription |
| def | RDFAnnotationParser_deleteRDFAnnotation |
| def | RDFAnnotationParser_parseCVTerms |
| def | RDFAnnotationParser_parseModelHistory |
| def | RDFAnnotationParser_parseRDFAnnotation |
| def | readMathMLFromString |
| def | readSBML |
| def | readSBMLFromFile |
| def | readSBMLFromString |
| def | SBMLDocument_getDefaultLevel |
| def | SBMLDocument_getDefaultVersion |
| def | SBMLNamespaces_getSBMLNamespaceURI |
| def | SBMLReader_hasBzip2 |
| def | SBMLReader_hasZlib |
| def | SBMLTypeCode_toString |
| def | SBMLWriter_hasBzip2 |
| def | SBMLWriter_hasZlib |
| def | SBO_checkTerm |
| def | SBO_intToString |
| def | SBO_isConservationLaw |
| def | SBO_isContinuousFramework |
| def | SBO_isDiscreteFramework |
| def | SBO_isEntity |
| def | SBO_isEvent |
| def | SBO_isFunctionalCompartment |
| def | SBO_isFunctionalEntity |
| def | SBO_isInteraction |
| def | SBO_isKineticConstant |
| def | SBO_isLogicalFramework |
| def | SBO_isMaterialEntity |
| def | SBO_isMathematicalExpression |
| def | SBO_isModellingFramework |
| def | SBO_isModifier |
| def | SBO_isObselete |
| def | SBO_isParticipant |
| def | SBO_isParticipantRole |
| def | SBO_isPhysicalParticipant |
| def | SBO_isProduct |
| def | SBO_isQuantitativeParameter |
| def | SBO_isRateLaw |
| def | SBO_isReactant |
| def | SBO_isSteadyStateExpression |
| def | SBO_stringToInt |
| def | swig_import_helper |
| def | SyntaxChecker_hasExpectedXHTMLSyntax |
| def | SyntaxChecker_isValidSBMLSId |
| def | SyntaxChecker_isValidUnitSId |
| def | SyntaxChecker_isValidXMLID |
| def | Unit_areEquivalent |
| def | Unit_areIdentical |
| def | Unit_convertToSI |
| def | Unit_isBuiltIn |
| def | Unit_isUnitKind |
| def | Unit_merge |
| def | Unit_removeScale |
| def | UnitDefinition_areEquivalent |
| def | UnitDefinition_areIdentical |
| def | UnitDefinition_combine |
| def | UnitDefinition_convertToSI |
| def | UnitDefinition_printUnits |
| def | UnitDefinition_reorder |
| def | UnitDefinition_simplify |
| def | UnitKind_equals |
| def | UnitKind_forName |
| def | UnitKind_isValidUnitKindString |
| def | UnitKind_toString |
| def | writeMathMLToString |
| def | writeSBML |
| def | writeSBMLToString |
| def | XMLError_getStandardMessage |
| def | XMLNode_convertStringToXMLNode |
| def | XMLNode_convertXMLNodeToString |
Variables | |
| tuple | _libsbml = swig_import_helper() |
| int | _newclass = 0 |
| AllChecksON = _libsbml.AllChecksON | |
| AnnotationNotesNotAllowedLevel1 = _libsbml.AnnotationNotesNotAllowedLevel1 | |
| ApplyCiMustBeModelComponent = _libsbml.ApplyCiMustBeModelComponent | |
| ApplyCiMustBeUserFunction = _libsbml.ApplyCiMustBeUserFunction | |
| ArgsToEqNeedSameType = _libsbml.ArgsToEqNeedSameType | |
| AssignmentToConstantEntity = _libsbml.AssignmentToConstantEntity | |
| AssignRuleCompartmentMismatch = _libsbml.AssignRuleCompartmentMismatch | |
| AssignRuleParameterMismatch = _libsbml.AssignRuleParameterMismatch | |
| AssignRuleSpeciesMismatch = _libsbml.AssignRuleSpeciesMismatch | |
| AST_CONSTANT_E = _libsbml.AST_CONSTANT_E | |
| AST_CONSTANT_FALSE = _libsbml.AST_CONSTANT_FALSE | |
| AST_CONSTANT_PI = _libsbml.AST_CONSTANT_PI | |
| AST_CONSTANT_TRUE = _libsbml.AST_CONSTANT_TRUE | |
| AST_DIVIDE = _libsbml.AST_DIVIDE | |
| AST_FUNCTION = _libsbml.AST_FUNCTION | |
| AST_FUNCTION_ABS = _libsbml.AST_FUNCTION_ABS | |
| AST_FUNCTION_ARCCOS = _libsbml.AST_FUNCTION_ARCCOS | |
| AST_FUNCTION_ARCCOSH = _libsbml.AST_FUNCTION_ARCCOSH | |
| AST_FUNCTION_ARCCOT = _libsbml.AST_FUNCTION_ARCCOT | |
| AST_FUNCTION_ARCCOTH = _libsbml.AST_FUNCTION_ARCCOTH | |
| AST_FUNCTION_ARCCSC = _libsbml.AST_FUNCTION_ARCCSC | |
| AST_FUNCTION_ARCCSCH = _libsbml.AST_FUNCTION_ARCCSCH | |
| AST_FUNCTION_ARCSEC = _libsbml.AST_FUNCTION_ARCSEC | |
| AST_FUNCTION_ARCSECH = _libsbml.AST_FUNCTION_ARCSECH | |
| AST_FUNCTION_ARCSIN = _libsbml.AST_FUNCTION_ARCSIN | |
| AST_FUNCTION_ARCSINH = _libsbml.AST_FUNCTION_ARCSINH | |
| AST_FUNCTION_ARCTAN = _libsbml.AST_FUNCTION_ARCTAN | |
| AST_FUNCTION_ARCTANH = _libsbml.AST_FUNCTION_ARCTANH | |
| AST_FUNCTION_CEILING = _libsbml.AST_FUNCTION_CEILING | |
| AST_FUNCTION_COS = _libsbml.AST_FUNCTION_COS | |
| AST_FUNCTION_COSH = _libsbml.AST_FUNCTION_COSH | |
| AST_FUNCTION_COT = _libsbml.AST_FUNCTION_COT | |
| AST_FUNCTION_COTH = _libsbml.AST_FUNCTION_COTH | |
| AST_FUNCTION_CSC = _libsbml.AST_FUNCTION_CSC | |
| AST_FUNCTION_CSCH = _libsbml.AST_FUNCTION_CSCH | |
| AST_FUNCTION_DELAY = _libsbml.AST_FUNCTION_DELAY | |
| AST_FUNCTION_EXP = _libsbml.AST_FUNCTION_EXP | |
| AST_FUNCTION_FACTORIAL = _libsbml.AST_FUNCTION_FACTORIAL | |
| AST_FUNCTION_FLOOR = _libsbml.AST_FUNCTION_FLOOR | |
| AST_FUNCTION_LN = _libsbml.AST_FUNCTION_LN | |
| AST_FUNCTION_LOG = _libsbml.AST_FUNCTION_LOG | |
| AST_FUNCTION_PIECEWISE = _libsbml.AST_FUNCTION_PIECEWISE | |
| AST_FUNCTION_POWER = _libsbml.AST_FUNCTION_POWER | |
| AST_FUNCTION_ROOT = _libsbml.AST_FUNCTION_ROOT | |
| AST_FUNCTION_SEC = _libsbml.AST_FUNCTION_SEC | |
| AST_FUNCTION_SECH = _libsbml.AST_FUNCTION_SECH | |
| AST_FUNCTION_SIN = _libsbml.AST_FUNCTION_SIN | |
| AST_FUNCTION_SINH = _libsbml.AST_FUNCTION_SINH | |
| AST_FUNCTION_TAN = _libsbml.AST_FUNCTION_TAN | |
| AST_FUNCTION_TANH = _libsbml.AST_FUNCTION_TANH | |
| AST_INTEGER = _libsbml.AST_INTEGER | |
| AST_LAMBDA = _libsbml.AST_LAMBDA | |
| AST_LOGICAL_AND = _libsbml.AST_LOGICAL_AND | |
| AST_LOGICAL_NOT = _libsbml.AST_LOGICAL_NOT | |
| AST_LOGICAL_OR = _libsbml.AST_LOGICAL_OR | |
| AST_LOGICAL_XOR = _libsbml.AST_LOGICAL_XOR | |
| AST_MINUS = _libsbml.AST_MINUS | |
| AST_NAME = _libsbml.AST_NAME | |
| AST_NAME_TIME = _libsbml.AST_NAME_TIME | |
| AST_PLUS = _libsbml.AST_PLUS | |
| AST_POWER = _libsbml.AST_POWER | |
| AST_RATIONAL = _libsbml.AST_RATIONAL | |
| AST_REAL = _libsbml.AST_REAL | |
| AST_REAL_E = _libsbml.AST_REAL_E | |
| AST_RELATIONAL_EQ = _libsbml.AST_RELATIONAL_EQ | |
| AST_RELATIONAL_GEQ = _libsbml.AST_RELATIONAL_GEQ | |
| AST_RELATIONAL_GT = _libsbml.AST_RELATIONAL_GT | |
| AST_RELATIONAL_LEQ = _libsbml.AST_RELATIONAL_LEQ | |
| AST_RELATIONAL_LT = _libsbml.AST_RELATIONAL_LT | |
| AST_RELATIONAL_NEQ = _libsbml.AST_RELATIONAL_NEQ | |
| AST_TIMES = _libsbml.AST_TIMES | |
| AST_UNKNOWN = _libsbml.AST_UNKNOWN | |
| BadCsymbolDefinitionURLValue = _libsbml.BadCsymbolDefinitionURLValue | |
| BadlyFormedXML = _libsbml.BadlyFormedXML | |
| BadMathML = _libsbml.BadMathML | |
| BadMathMLNodeType = _libsbml.BadMathMLNodeType | |
| BadProcessingInstruction = _libsbml.BadProcessingInstruction | |
| BadXMLAttribute = _libsbml.BadXMLAttribute | |
| BadXMLAttributeValue = _libsbml.BadXMLAttributeValue | |
| BadXMLComment = _libsbml.BadXMLComment | |
| BadXMLDecl = _libsbml.BadXMLDecl | |
| BadXMLDeclLocation = _libsbml.BadXMLDeclLocation | |
| BadXMLDOCTYPE = _libsbml.BadXMLDOCTYPE | |
| BadXMLDocumentStructure = _libsbml.BadXMLDocumentStructure | |
| BadXMLIDRef = _libsbml.BadXMLIDRef | |
| BadXMLIDValue = _libsbml.BadXMLIDValue | |
| BadXMLPrefix = _libsbml.BadXMLPrefix | |
| BadXMLPrefixValue = _libsbml.BadXMLPrefixValue | |
| BIOLOGICAL_QUALIFIER = _libsbml.BIOLOGICAL_QUALIFIER | |
| BooleanOpsNeedBooleanArgs = _libsbml.BooleanOpsNeedBooleanArgs | |
| BothAmountAndConcentrationSet = _libsbml.BothAmountAndConcentrationSet | |
| BothStoichiometryAndMath = _libsbml.BothStoichiometryAndMath | |
| BQB_ENCODES = _libsbml.BQB_ENCODES | |
| BQB_HAS_PART = _libsbml.BQB_HAS_PART | |
| BQB_HAS_VERSION = _libsbml.BQB_HAS_VERSION | |
| BQB_IS = _libsbml.BQB_IS | |
| BQB_IS_DESCRIBED_BY = _libsbml.BQB_IS_DESCRIBED_BY | |
| BQB_IS_ENCODED_BY = _libsbml.BQB_IS_ENCODED_BY | |
| BQB_IS_HOMOLOG_TO = _libsbml.BQB_IS_HOMOLOG_TO | |
| BQB_IS_PART_OF = _libsbml.BQB_IS_PART_OF | |
| BQB_IS_VERSION_OF = _libsbml.BQB_IS_VERSION_OF | |
| BQB_OCCURS_IN = _libsbml.BQB_OCCURS_IN | |
| BQB_UNKNOWN = _libsbml.BQB_UNKNOWN | |
| BQM_IS = _libsbml.BQM_IS | |
| BQM_IS_DESCRIBED_BY = _libsbml.BQM_IS_DESCRIBED_BY | |
| BQM_UNKNOWN = _libsbml.BQM_UNKNOWN | |
| CannotConvertToL1V1 = _libsbml.CannotConvertToL1V1 | |
| CelsiusNoLongerValid = _libsbml.CelsiusNoLongerValid | |
| cerr = cvar.cerr | |
| CircularRuleDependency = _libsbml.CircularRuleDependency | |
| clog = cvar.clog | |
| CompartmentShouldHaveSize = _libsbml.CompartmentShouldHaveSize | |
| CompartmentTypeNotValidAttribute = _libsbml.CompartmentTypeNotValidAttribute | |
| CompartmentTypeNotValidComponent = _libsbml.CompartmentTypeNotValidComponent | |
| ConstantNotValidAttribute = _libsbml.ConstantNotValidAttribute | |
| ConstantSpeciesNotValidAttribute = _libsbml.ConstantSpeciesNotValidAttribute | |
| ConstraintContainsDOCTYPE = _libsbml.ConstraintContainsDOCTYPE | |
| ConstraintContainsXMLDecl = _libsbml.ConstraintContainsXMLDecl | |
| ConstraintMathNotBoolean = _libsbml.ConstraintMathNotBoolean | |
| ConstraintNotInXHTMLNamespace = _libsbml.ConstraintNotInXHTMLNamespace | |
| ConstraintNotValidComponent = _libsbml.ConstraintNotValidComponent | |
| cout = cvar.cout | |
| cvar = _libsbml.cvar | |
| DelayUnitsNotTime = _libsbml.DelayUnitsNotTime | |
| DisallowedDefinitionURLUse = _libsbml.DisallowedDefinitionURLUse | |
| DisallowedMathMLEncodingUse = _libsbml.DisallowedMathMLEncodingUse | |
| DisallowedMathMLSymbol = _libsbml.DisallowedMathMLSymbol | |
| DisallowedMathTypeAttributeUse = _libsbml.DisallowedMathTypeAttributeUse | |
| DisallowedMathTypeAttributeValue = _libsbml.DisallowedMathTypeAttributeValue | |
| DuplicateAnnotationInvalidInL2v2 = _libsbml.DuplicateAnnotationInvalidInL2v2 | |
| DuplicateAnnotationInvalidInL2v3 = _libsbml.DuplicateAnnotationInvalidInL2v3 | |
| DuplicateAnnotationInvalidInL2v4 = _libsbml.DuplicateAnnotationInvalidInL2v4 | |
| DuplicateAnnotationNamespaces = _libsbml.DuplicateAnnotationNamespaces | |
| DuplicateComponentId = _libsbml.DuplicateComponentId | |
| DuplicateLocalParameterId = _libsbml.DuplicateLocalParameterId | |
| DuplicateMetaId = _libsbml.DuplicateMetaId | |
| DuplicateUnitDefinitionId = _libsbml.DuplicateUnitDefinitionId | |
| DuplicateXMLAttribute = _libsbml.DuplicateXMLAttribute | |
| EmptyListElement = _libsbml.EmptyListElement | |
| EmptyListInKineticLaw = _libsbml.EmptyListInKineticLaw | |
| EmptyListInReaction = _libsbml.EmptyListInReaction | |
| EmptyListOfUnits = _libsbml.EmptyListOfUnits | |
| EventAndAssignmentRuleForId = _libsbml.EventAndAssignmentRuleForId | |
| EventAssignCompartmentMismatch = _libsbml.EventAssignCompartmentMismatch | |
| EventAssignmentForConstantEntity = _libsbml.EventAssignmentForConstantEntity | |
| EventAssignParameterMismatch = _libsbml.EventAssignParameterMismatch | |
| EventAssignSpeciesMismatch = _libsbml.EventAssignSpeciesMismatch | |
| EventNotValidComponent = _libsbml.EventNotValidComponent | |
| FailedMathMLReadOfDouble = _libsbml.FailedMathMLReadOfDouble | |
| FailedMathMLReadOfExponential = _libsbml.FailedMathMLReadOfExponential | |
| FailedMathMLReadOfInteger = _libsbml.FailedMathMLReadOfInteger | |
| FailedMathMLReadOfRational = _libsbml.FailedMathMLReadOfRational | |
| FormulaInLevel1KL = _libsbml.FormulaInLevel1KL | |
| FuncDefNotValidComponent = _libsbml.FuncDefNotValidComponent | |
| FunctionDefMathNotLambda = _libsbml.FunctionDefMathNotLambda | |
| GeneralWarningNotSpecified = _libsbml.GeneralWarningNotSpecified | |
| HasOnlySubsNoSpatialUnits = _libsbml.HasOnlySubsNoSpatialUnits | |
| HasOnlySubsUnitsNotValidAttribute = _libsbml.HasOnlySubsUnitsNotValidAttribute | |
| IdCheckOFF = _libsbml.IdCheckOFF | |
| IdCheckON = _libsbml.IdCheckON | |
| IdNotValidAttribute = _libsbml.IdNotValidAttribute | |
| InconsistentArgUnits = _libsbml.InconsistentArgUnits | |
| InconsistentArgUnitsWarnings = _libsbml.InconsistentArgUnitsWarnings | |
| InconsistentExponUnitsWarnings = _libsbml.InconsistentExponUnitsWarnings | |
| InconsistentPowerUnitsWarnings = _libsbml.InconsistentPowerUnitsWarnings | |
| IncorrectCompartmentSpatialDimensions = _libsbml.IncorrectCompartmentSpatialDimensions | |
| IncorrectOrderInConstraint = _libsbml.IncorrectOrderInConstraint | |
| IncorrectOrderInEvent = _libsbml.IncorrectOrderInEvent | |
| IncorrectOrderInKineticLaw = _libsbml.IncorrectOrderInKineticLaw | |
| IncorrectOrderInModel = _libsbml.IncorrectOrderInModel | |
| IncorrectOrderInReaction = _libsbml.IncorrectOrderInReaction | |
| InitAssignCompartmenMismatch = _libsbml.InitAssignCompartmenMismatch | |
| InitAssignmentAndRuleForSameId = _libsbml.InitAssignmentAndRuleForSameId | |
| InitAssignParameterMismatch = _libsbml.InitAssignParameterMismatch | |
| InitAssignSpeciesMismatch = _libsbml.InitAssignSpeciesMismatch | |
| InitialAssignNotValidComponent = _libsbml.InitialAssignNotValidComponent | |
| InternalXMLParserError = _libsbml.InternalXMLParserError | |
| Invalid1DCompartmentUnits = _libsbml.Invalid1DCompartmentUnits | |
| Invalid2DCompartmentUnits = _libsbml.Invalid2DCompartmentUnits | |
| Invalid3DCompartmentUnits = _libsbml.Invalid3DCompartmentUnits | |
| InvalidAfterXMLContent = _libsbml.InvalidAfterXMLContent | |
| InvalidApplyCiInLambda = _libsbml.InvalidApplyCiInLambda | |
| InvalidAreaRedefinition = _libsbml.InvalidAreaRedefinition | |
| InvalidAssignRuleVariable = _libsbml.InvalidAssignRuleVariable | |
| InvalidCharInXML = _libsbml.InvalidCharInXML | |
| InvalidCiInLambda = _libsbml.InvalidCiInLambda | |
| InvalidCompartmentSBOTerm = _libsbml.InvalidCompartmentSBOTerm | |
| InvalidCompartmentTypeRef = _libsbml.InvalidCompartmentTypeRef | |
| InvalidCompartmentTypeSBOTerm = _libsbml.InvalidCompartmentTypeSBOTerm | |
| InvalidConstraintContent = _libsbml.InvalidConstraintContent | |
| InvalidConstraintSBOTerm = _libsbml.InvalidConstraintSBOTerm | |
| InvalidDelaySBOTerm = _libsbml.InvalidDelaySBOTerm | |
| InvalidEventAssignmentSBOTerm = _libsbml.InvalidEventAssignmentSBOTerm | |
| InvalidEventAssignmentVariable = _libsbml.InvalidEventAssignmentVariable | |
| InvalidEventSBOTerm = _libsbml.InvalidEventSBOTerm | |
| InvalidFunctionDefReturnType = _libsbml.InvalidFunctionDefReturnType | |
| InvalidFunctionDefSBOTerm = _libsbml.InvalidFunctionDefSBOTerm | |
| InvalidIdSyntax = _libsbml.InvalidIdSyntax | |
| InvalidInitAssignSBOTerm = _libsbml.InvalidInitAssignSBOTerm | |
| InvalidInitAssignSymbol = _libsbml.InvalidInitAssignSymbol | |
| InvalidKineticLawSBOTerm = _libsbml.InvalidKineticLawSBOTerm | |
| InvalidL1CompartmentUnits = _libsbml.InvalidL1CompartmentUnits | |
| InvalidLengthRedefinition = _libsbml.InvalidLengthRedefinition | |
| InvalidMathElement = _libsbml.InvalidMathElement | |
| InvalidMetaidSyntax = _libsbml.InvalidMetaidSyntax | |
| InvalidModelSBOTerm = _libsbml.InvalidModelSBOTerm | |
| InvalidModifiersList = _libsbml.InvalidModifiersList | |
| InvalidNamespaceOnSBML = _libsbml.InvalidNamespaceOnSBML | |
| InvalidNoArgsPassedToFunctionDef = _libsbml.InvalidNoArgsPassedToFunctionDef | |
| InvalidNotesContent = _libsbml.InvalidNotesContent | |
| InvalidParameterSBOTerm = _libsbml.InvalidParameterSBOTerm | |
| InvalidParameterUnits = _libsbml.InvalidParameterUnits | |
| InvalidRateRuleVariable = _libsbml.InvalidRateRuleVariable | |
| InvalidReactantsProductsList = _libsbml.InvalidReactantsProductsList | |
| InvalidReactionSBOTerm = _libsbml.InvalidReactionSBOTerm | |
| InvalidRuleOrdering = _libsbml.InvalidRuleOrdering | |
| InvalidRuleSBOTerm = _libsbml.InvalidRuleSBOTerm | |
| InvalidSBMLLevelVersion = _libsbml.InvalidSBMLLevelVersion | |
| InvalidSBOTermSyntax = _libsbml.InvalidSBOTermSyntax | |
| InvalidSpeciesCompartmentRef = _libsbml.InvalidSpeciesCompartmentRef | |
| InvalidSpeciesReference = _libsbml.InvalidSpeciesReference | |
| InvalidSpeciesReferenceSBOTerm = _libsbml.InvalidSpeciesReferenceSBOTerm | |
| InvalidSpeciesSBOTerm = _libsbml.InvalidSpeciesSBOTerm | |
| InvalidSpeciesSusbstanceUnits = _libsbml.InvalidSpeciesSusbstanceUnits | |
| InvalidSpeciesTypeRef = _libsbml.InvalidSpeciesTypeRef | |
| InvalidSpeciesTypeSBOTerm = _libsbml.InvalidSpeciesTypeSBOTerm | |
| InvalidSubstanceRedefinition = _libsbml.InvalidSubstanceRedefinition | |
| InvalidTimeRedefinition = _libsbml.InvalidTimeRedefinition | |
| InvalidTriggerSBOTerm = _libsbml.InvalidTriggerSBOTerm | |
| InvalidUnitDefId = _libsbml.InvalidUnitDefId | |
| InvalidUnitIdSyntax = _libsbml.InvalidUnitIdSyntax | |
| InvalidUnitKind = _libsbml.InvalidUnitKind | |
| InvalidVolumeRedefinition = _libsbml.InvalidVolumeRedefinition | |
| InvalidXMLConstruct = _libsbml.InvalidXMLConstruct | |
| KineticLawNotSubstancePerTime = _libsbml.KineticLawNotSubstancePerTime | |
| KineticLawParametersAreLocalOnly = _libsbml.KineticLawParametersAreLocalOnly | |
| L1V1CompartmentVolumeReqd = _libsbml.L1V1CompartmentVolumeReqd | |
| LambdaOnlyAllowedInFunctionDef = _libsbml.LambdaOnlyAllowedInFunctionDef | |
| LIBSBML_CAT_GENERAL_CONSISTENCY = _libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY | |
| LIBSBML_CAT_IDENTIFIER_CONSISTENCY = _libsbml.LIBSBML_CAT_IDENTIFIER_CONSISTENCY | |
| LIBSBML_CAT_INTERNAL = _libsbml.LIBSBML_CAT_INTERNAL | |
| LIBSBML_CAT_INTERNAL_CONSISTENCY = _libsbml.LIBSBML_CAT_INTERNAL_CONSISTENCY | |
| LIBSBML_CAT_MATHML_CONSISTENCY = _libsbml.LIBSBML_CAT_MATHML_CONSISTENCY | |
| LIBSBML_CAT_MODELING_PRACTICE = _libsbml.LIBSBML_CAT_MODELING_PRACTICE | |
| LIBSBML_CAT_OVERDETERMINED_MODEL = _libsbml.LIBSBML_CAT_OVERDETERMINED_MODEL | |
| LIBSBML_CAT_SBML = _libsbml.LIBSBML_CAT_SBML | |
| LIBSBML_CAT_SBML_L1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L1_COMPAT | |
| LIBSBML_CAT_SBML_L2V1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V1_COMPAT | |
| LIBSBML_CAT_SBML_L2V2_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V2_COMPAT | |
| LIBSBML_CAT_SBML_L2V3_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V3_COMPAT | |
| LIBSBML_CAT_SBML_L2V4_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V4_COMPAT | |
| LIBSBML_CAT_SBO_CONSISTENCY = _libsbml.LIBSBML_CAT_SBO_CONSISTENCY | |
| LIBSBML_CAT_SYSTEM = _libsbml.LIBSBML_CAT_SYSTEM | |
| LIBSBML_CAT_UNITS_CONSISTENCY = _libsbml.LIBSBML_CAT_UNITS_CONSISTENCY | |
| LIBSBML_CAT_XML = _libsbml.LIBSBML_CAT_XML | |
| LIBSBML_DOTTED_VERSION = _libsbml.LIBSBML_DOTTED_VERSION | |
| LIBSBML_DUPLICATE_OBJECT_ID = _libsbml.LIBSBML_DUPLICATE_OBJECT_ID | |
| LIBSBML_INDEX_EXCEEDS_SIZE = _libsbml.LIBSBML_INDEX_EXCEEDS_SIZE | |
| LIBSBML_INVALID_ATTRIBUTE_VALUE = _libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE | |
| LIBSBML_INVALID_OBJECT = _libsbml.LIBSBML_INVALID_OBJECT | |
| LIBSBML_INVALID_XML_OPERATION = _libsbml.LIBSBML_INVALID_XML_OPERATION | |
| LIBSBML_LEVEL_MISMATCH = _libsbml.LIBSBML_LEVEL_MISMATCH | |
| LIBSBML_OPERATION_FAILED = _libsbml.LIBSBML_OPERATION_FAILED | |
| LIBSBML_OPERATION_RETURN_VALUES_H = _libsbml.LIBSBML_OPERATION_RETURN_VALUES_H | |
| LIBSBML_OPERATION_SUCCESS = _libsbml.LIBSBML_OPERATION_SUCCESS | |
| LIBSBML_SEV_ERROR = _libsbml.LIBSBML_SEV_ERROR | |
| LIBSBML_SEV_FATAL = _libsbml.LIBSBML_SEV_FATAL | |
| LIBSBML_SEV_GENERAL_WARNING = _libsbml.LIBSBML_SEV_GENERAL_WARNING | |
| LIBSBML_SEV_INFO = _libsbml.LIBSBML_SEV_INFO | |
| LIBSBML_SEV_NOT_APPLICABLE = _libsbml.LIBSBML_SEV_NOT_APPLICABLE | |
| LIBSBML_SEV_SCHEMA_ERROR = _libsbml.LIBSBML_SEV_SCHEMA_ERROR | |
| LIBSBML_SEV_WARNING = _libsbml.LIBSBML_SEV_WARNING | |
| LIBSBML_UNEXPECTED_ATTRIBUTE = _libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE | |
| LIBSBML_VERSION = _libsbml.LIBSBML_VERSION | |
| LIBSBML_VERSION_MISMATCH = _libsbml.LIBSBML_VERSION_MISMATCH | |
| LIBSBML_VERSION_STRING = _libsbml.LIBSBML_VERSION_STRING | |
| LibSBMLAdditionalCodesLowerBound = _libsbml.LibSBMLAdditionalCodesLowerBound | |
| LocalParameterShadowsId = _libsbml.LocalParameterShadowsId | |
| MathCheckOFF = _libsbml.MathCheckOFF | |
| MathCheckON = _libsbml.MathCheckON | |
| MathResultMustBeNumeric = _libsbml.MathResultMustBeNumeric | |
| MetaIdNotValidAttribute = _libsbml.MetaIdNotValidAttribute | |
| MissingAnnotationNamespace = _libsbml.MissingAnnotationNamespace | |
| MissingEventAssignment = _libsbml.MissingEventAssignment | |
| MissingModel = _libsbml.MissingModel | |
| MissingOrInconsistentLevel = _libsbml.MissingOrInconsistentLevel | |
| MissingOrInconsistentVersion = _libsbml.MissingOrInconsistentVersion | |
| MissingSpeciesCompartment = _libsbml.MissingSpeciesCompartment | |
| MissingTriggerInEvent = _libsbml.MissingTriggerInEvent | |
| MissingXMLAttributeValue = _libsbml.MissingXMLAttributeValue | |
| MissingXMLDecl = _libsbml.MissingXMLDecl | |
| MissingXMLElements = _libsbml.MissingXMLElements | |
| MissingXMLEncoding = _libsbml.MissingXMLEncoding | |
| MissingXMLRequiredAttribute = _libsbml.MissingXMLRequiredAttribute | |
| MODEL_QUALIFIER = _libsbml.MODEL_QUALIFIER | |
| ModelSBOBranchChangedBeyondL2v2 = _libsbml.ModelSBOBranchChangedBeyondL2v2 | |
| ModelSBOBranchChangedBeyondL2v3 = _libsbml.ModelSBOBranchChangedBeyondL2v3 | |
| ModelSBOBranchChangedInL2v4 = _libsbml.ModelSBOBranchChangedInL2v4 | |
| MultipleAssignmentOrRateRules = _libsbml.MultipleAssignmentOrRateRules | |
| MultipleEventAssignmentsForId = _libsbml.MultipleEventAssignmentsForId | |
| MultipleInitAssignments = _libsbml.MultipleInitAssignments | |
| MultiplierNotValidAttribute = _libsbml.MultiplierNotValidAttribute | |
| MultSpeciesSameTypeInCompartment = _libsbml.MultSpeciesSameTypeInCompartment | |
| NameNotValidAttribute = _libsbml.NameNotValidAttribute | |
| NeedCompartmentIfHaveSpecies = _libsbml.NeedCompartmentIfHaveSpecies | |
| NoCompartmentTypeInL1 = _libsbml.NoCompartmentTypeInL1 | |
| NoCompartmentTypeInL2v1 = _libsbml.NoCompartmentTypeInL2v1 | |
| NoConcentrationInZeroD = _libsbml.NoConcentrationInZeroD | |
| NoConstraintsInL1 = _libsbml.NoConstraintsInL1 | |
| NoConstraintsInL2v1 = _libsbml.NoConstraintsInL2v1 | |
| NoDelayedEventAssignmentInL2v1 = _libsbml.NoDelayedEventAssignmentInL2v1 | |
| NoDelayedEventAssignmentInL2v2 = _libsbml.NoDelayedEventAssignmentInL2v2 | |
| NoDelayedEventAssignmentInL2v3 = _libsbml.NoDelayedEventAssignmentInL2v3 | |
| NoEventsInL1 = _libsbml.NoEventsInL1 | |
| NoEventTimeUnitsInL2v3 = _libsbml.NoEventTimeUnitsInL2v3 | |
| NoEventTimeUnitsInL2v4 = _libsbml.NoEventTimeUnitsInL2v4 | |
| NoFancyStoichiometryMathInL1 = _libsbml.NoFancyStoichiometryMathInL1 | |
| NoFunctionDefinitionsInL1 = _libsbml.NoFunctionDefinitionsInL1 | |
| NoIdOnSpeciesReferenceInL2v1 = _libsbml.NoIdOnSpeciesReferenceInL2v1 | |
| NoInitialAssignmentsInL1 = _libsbml.NoInitialAssignmentsInL1 | |
| NoInitialAssignmentsInL2v1 = _libsbml.NoInitialAssignmentsInL2v1 | |
| NoKineticLawSubstanceUnitsInL2v2 = _libsbml.NoKineticLawSubstanceUnitsInL2v2 | |
| NoKineticLawSubstanceUnitsInL2v3 = _libsbml.NoKineticLawSubstanceUnitsInL2v3 | |
| NoKineticLawSubstanceUnitsInL2v4 = _libsbml.NoKineticLawSubstanceUnitsInL2v4 | |
| NoKineticLawTimeUnitsInL2v2 = _libsbml.NoKineticLawTimeUnitsInL2v2 | |
| NoKineticLawTimeUnitsInL2v3 = _libsbml.NoKineticLawTimeUnitsInL2v3 | |
| NoKineticLawTimeUnitsInL2v4 = _libsbml.NoKineticLawTimeUnitsInL2v4 | |
| NonBoundarySpeciesAssignedAndUsed = _libsbml.NonBoundarySpeciesAssignedAndUsed | |
| NonConstantLocalParameter = _libsbml.NonConstantLocalParameter | |
| NonConstantSpeciesUsed = _libsbml.NonConstantSpeciesUsed | |
| NoNon3DComparmentsInL1 = _libsbml.NoNon3DComparmentsInL1 | |
| NoNonIntegerStoichiometryInL1 = _libsbml.NoNonIntegerStoichiometryInL1 | |
| NoReactantsOrProducts = _libsbml.NoReactantsOrProducts | |
| NoSBOTermsInL1 = _libsbml.NoSBOTermsInL1 | |
| NoSBOTermsInL2v1 = _libsbml.NoSBOTermsInL2v1 | |
| NoSpatialUnitsInZeroD = _libsbml.NoSpatialUnitsInZeroD | |
| NoSpeciesSpatialSizeUnitsInL1 = _libsbml.NoSpeciesSpatialSizeUnitsInL1 | |
| NoSpeciesSpatialSizeUnitsInL2v3 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v3 | |
| NoSpeciesSpatialSizeUnitsInL2v4 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v4 | |
| NoSpeciesTypeInL2v1 = _libsbml.NoSpeciesTypeInL2v1 | |
| NoSpeciesTypesInL1 = _libsbml.NoSpeciesTypesInL1 | |
| NotesContainsDOCTYPE = _libsbml.NotesContainsDOCTYPE | |
| NotesContainsXMLDecl = _libsbml.NotesContainsXMLDecl | |
| NotesNotInXHTMLNamespace = _libsbml.NotesNotInXHTMLNamespace | |
| NoTimeSymbolInFunctionDef = _libsbml.NoTimeSymbolInFunctionDef | |
| NotSchemaConformant = _libsbml.NotSchemaConformant | |
| NotUTF8 = _libsbml.NotUTF8 | |
| NoUnitMultipliersOrOffsetsInL1 = _libsbml.NoUnitMultipliersOrOffsetsInL1 | |
| NoUnitOffsetInL2v2 = _libsbml.NoUnitOffsetInL2v2 | |
| NoUnitOffsetInL2v3 = _libsbml.NoUnitOffsetInL2v3 | |
| NoUnitOffsetInL2v4 = _libsbml.NoUnitOffsetInL2v4 | |
| NumericOpsNeedNumericArgs = _libsbml.NumericOpsNeedNumericArgs | |
| ObseleteSBOTerm = _libsbml.ObseleteSBOTerm | |
| OffsetNoLongerValid = _libsbml.OffsetNoLongerValid | |
| OffsetNotValidAttribute = _libsbml.OffsetNotValidAttribute | |
| OpsNeedCorrectNumberOfArgs = _libsbml.OpsNeedCorrectNumberOfArgs | |
| OverdeterCheckOFF = _libsbml.OverdeterCheckOFF | |
| OverdeterCheckON = _libsbml.OverdeterCheckON | |
| OverdeterminedSystem = _libsbml.OverdeterminedSystem | |
| ParameterShouldHaveUnits = _libsbml.ParameterShouldHaveUnits | |
| PieceNeedsBoolean = _libsbml.PieceNeedsBoolean | |
| PiecewiseNeedsConsistentTypes = _libsbml.PiecewiseNeedsConsistentTypes | |
| PracticeCheckOFF = _libsbml.PracticeCheckOFF | |
| PracticeCheckON = _libsbml.PracticeCheckON | |
| RateRuleCompartmentMismatch = _libsbml.RateRuleCompartmentMismatch | |
| RateRuleForConstantEntity = _libsbml.RateRuleForConstantEntity | |
| RateRuleParameterMismatch = _libsbml.RateRuleParameterMismatch | |
| RateRuleSpeciesMismatch = _libsbml.RateRuleSpeciesMismatch | |
| RecursiveCompartmentContainment = _libsbml.RecursiveCompartmentContainment | |
| RecursiveFunctionDefinition = _libsbml.RecursiveFunctionDefinition | |
| RepeatedRule10304 = _libsbml.RepeatedRule10304 | |
| RepeatedRule20611 = _libsbml.RepeatedRule20611 | |
| RULE_TYPE_INVALID = _libsbml.RULE_TYPE_INVALID | |
| RULE_TYPE_RATE = _libsbml.RULE_TYPE_RATE | |
| RULE_TYPE_SCALAR = _libsbml.RULE_TYPE_SCALAR | |
| SBML_ALGEBRAIC_RULE = _libsbml.SBML_ALGEBRAIC_RULE | |
| SBML_ASSIGNMENT_RULE = _libsbml.SBML_ASSIGNMENT_RULE | |
| SBML_COMPARTMENT = _libsbml.SBML_COMPARTMENT | |
| SBML_COMPARTMENT_TYPE = _libsbml.SBML_COMPARTMENT_TYPE | |
| SBML_COMPARTMENT_VOLUME_RULE = _libsbml.SBML_COMPARTMENT_VOLUME_RULE | |
| SBML_CONSTRAINT = _libsbml.SBML_CONSTRAINT | |
| SBML_DEFAULT_LEVEL = _libsbml.SBML_DEFAULT_LEVEL | |
| SBML_DEFAULT_VERSION = _libsbml.SBML_DEFAULT_VERSION | |
| SBML_DELAY = _libsbml.SBML_DELAY | |
| SBML_DOCUMENT = _libsbml.SBML_DOCUMENT | |
| SBML_EVENT = _libsbml.SBML_EVENT | |
| SBML_EVENT_ASSIGNMENT = _libsbml.SBML_EVENT_ASSIGNMENT | |
| SBML_FORMULA_UNITS_DATA = _libsbml.SBML_FORMULA_UNITS_DATA | |
| SBML_FUNCTION_DEFINITION = _libsbml.SBML_FUNCTION_DEFINITION | |
| SBML_INITIAL_ASSIGNMENT = _libsbml.SBML_INITIAL_ASSIGNMENT | |
| SBML_KINETIC_LAW = _libsbml.SBML_KINETIC_LAW | |
| SBML_LIST_FORMULA_UNITS_DATA = _libsbml.SBML_LIST_FORMULA_UNITS_DATA | |
| SBML_LIST_OF = _libsbml.SBML_LIST_OF | |
| SBML_LISTOF_COMPARTMENT_TYPES = _libsbml.SBML_LISTOF_COMPARTMENT_TYPES | |
| SBML_LISTOF_COMPARTMENTS = _libsbml.SBML_LISTOF_COMPARTMENTS | |
| SBML_LISTOF_CONSTRAINTS = _libsbml.SBML_LISTOF_CONSTRAINTS | |
| SBML_LISTOF_EVENT_ASSIGNMENTS = _libsbml.SBML_LISTOF_EVENT_ASSIGNMENTS | |
| SBML_LISTOF_EVENTS = _libsbml.SBML_LISTOF_EVENTS | |
| SBML_LISTOF_FUNCTION_DEFINITIONS = _libsbml.SBML_LISTOF_FUNCTION_DEFINITIONS | |
| SBML_LISTOF_INITIAL_ASSIGNMENTS = _libsbml.SBML_LISTOF_INITIAL_ASSIGNMENTS | |
| SBML_LISTOF_PARAMETERS = _libsbml.SBML_LISTOF_PARAMETERS | |
| SBML_LISTOF_REACTIONS = _libsbml.SBML_LISTOF_REACTIONS | |
| SBML_LISTOF_RULES = _libsbml.SBML_LISTOF_RULES | |
| SBML_LISTOF_SPECIES = _libsbml.SBML_LISTOF_SPECIES | |
| SBML_LISTOF_SPECIES_REFERENCES = _libsbml.SBML_LISTOF_SPECIES_REFERENCES | |
| SBML_LISTOF_SPECIES_TYPES = _libsbml.SBML_LISTOF_SPECIES_TYPES | |
| SBML_LISTOF_UNIT_DEFINITIONS = _libsbml.SBML_LISTOF_UNIT_DEFINITIONS | |
| SBML_LISTOF_UNITS = _libsbml.SBML_LISTOF_UNITS | |
| SBML_MODEL = _libsbml.SBML_MODEL | |
| SBML_MODIFIER_SPECIES_REFERENCE = _libsbml.SBML_MODIFIER_SPECIES_REFERENCE | |
| SBML_PARAMETER = _libsbml.SBML_PARAMETER | |
| SBML_PARAMETER_RULE = _libsbml.SBML_PARAMETER_RULE | |
| SBML_RATE_RULE = _libsbml.SBML_RATE_RULE | |
| SBML_REACTION = _libsbml.SBML_REACTION | |
| SBML_RULE = _libsbml.SBML_RULE | |
| SBML_SPECIES = _libsbml.SBML_SPECIES | |
| SBML_SPECIES_CONCENTRATION_RULE = _libsbml.SBML_SPECIES_CONCENTRATION_RULE | |
| SBML_SPECIES_REFERENCE = _libsbml.SBML_SPECIES_REFERENCE | |
| SBML_SPECIES_TYPE = _libsbml.SBML_SPECIES_TYPE | |
| SBML_STOICHIOMETRY_MATH = _libsbml.SBML_STOICHIOMETRY_MATH | |
| SBML_TRIGGER = _libsbml.SBML_TRIGGER | |
| SBML_UNIT = _libsbml.SBML_UNIT | |
| SBML_UNIT_DEFINITION = _libsbml.SBML_UNIT_DEFINITION | |
| SBML_UNKNOWN = _libsbml.SBML_UNKNOWN | |
| SBML_XMLNS_L1 = _libsbml.SBML_XMLNS_L1 | |
| SBML_XMLNS_L2V1 = _libsbml.SBML_XMLNS_L2V1 | |
| SBML_XMLNS_L2V2 = _libsbml.SBML_XMLNS_L2V2 | |
| SBML_XMLNS_L2V3 = _libsbml.SBML_XMLNS_L2V3 | |
| SBML_XMLNS_L2V4 = _libsbml.SBML_XMLNS_L2V4 | |
| SBMLCheckOFF = _libsbml.SBMLCheckOFF | |
| SBMLCheckON = _libsbml.SBMLCheckON | |
| SBMLCodesUpperBound = _libsbml.SBMLCodesUpperBound | |
| SBMLNamespaceInAnnotation = _libsbml.SBMLNamespaceInAnnotation | |
| SBOCheckOFF = _libsbml.SBOCheckOFF | |
| SBOCheckON = _libsbml.SBOCheckON | |
| SBOTermNotUniversalInL2v2 = _libsbml.SBOTermNotUniversalInL2v2 | |
| SBOTermNotValidAttributeBeforeL2V2 = _libsbml.SBOTermNotValidAttributeBeforeL2V2 | |
| SBOTermNotValidAttributeBeforeL2V3 = _libsbml.SBOTermNotValidAttributeBeforeL2V3 | |
| SpatialSizeUnitsNotValidAttribute = _libsbml.SpatialSizeUnitsNotValidAttribute | |
| SpatialSizeUnitsRemoved = _libsbml.SpatialSizeUnitsRemoved | |
| SpatialUnitsInOneD = _libsbml.SpatialUnitsInOneD | |
| SpatialUnitsInThreeD = _libsbml.SpatialUnitsInThreeD | |
| SpatialUnitsInTwoD = _libsbml.SpatialUnitsInTwoD | |
| SpeciesCompartmentRequiredInL1 = _libsbml.SpeciesCompartmentRequiredInL1 | |
| SpeciesTypeNotValidAttribute = _libsbml.SpeciesTypeNotValidAttribute | |
| SpeciesTypeNotValidComponent = _libsbml.SpeciesTypeNotValidComponent | |
| StoichiometryMathNotValidComponent = _libsbml.StoichiometryMathNotValidComponent | |
| StrictSBORequiredInL2v2 = _libsbml.StrictSBORequiredInL2v2 | |
| StrictSBORequiredInL2v3 = _libsbml.StrictSBORequiredInL2v3 | |
| StrictUnitsRequiredInL1 = _libsbml.StrictUnitsRequiredInL1 | |
| StrictUnitsRequiredInL2v1 = _libsbml.StrictUnitsRequiredInL2v1 | |
| StrictUnitsRequiredInL2v2 = _libsbml.StrictUnitsRequiredInL2v2 | |
| StrictUnitsRequiredInL2v3 = _libsbml.StrictUnitsRequiredInL2v3 | |
| SubsUnitsAllowedInKL = _libsbml.SubsUnitsAllowedInKL | |
| SubsUnitsNoLongerValid = _libsbml.SubsUnitsNoLongerValid | |
| TimeUnitsAllowedInKL = _libsbml.TimeUnitsAllowedInKL | |
| TimeUnitsEvent = _libsbml.TimeUnitsEvent | |
| TimeUnitsNoLongerValid = _libsbml.TimeUnitsNoLongerValid | |
| TimeUnitsRemoved = _libsbml.TimeUnitsRemoved | |
| TriggerMathNotBoolean = _libsbml.TriggerMathNotBoolean | |
| UnclosedXMLToken = _libsbml.UnclosedXMLToken | |
| UndeclaredSpeciesInStoichMath = _libsbml.UndeclaredSpeciesInStoichMath | |
| UndeclaredSpeciesRef = _libsbml.UndeclaredSpeciesRef | |
| UndeclaredUnits = _libsbml.UndeclaredUnits | |
| UndefinedOutsideCompartment = _libsbml.UndefinedOutsideCompartment | |
| UndefinedXMLEntity = _libsbml.UndefinedXMLEntity | |
| UninterpretableXMLContent = _libsbml.UninterpretableXMLContent | |
| UNIT_KIND_AMPERE = _libsbml.UNIT_KIND_AMPERE | |
| UNIT_KIND_BECQUEREL = _libsbml.UNIT_KIND_BECQUEREL | |
| UNIT_KIND_CANDELA = _libsbml.UNIT_KIND_CANDELA | |
| UNIT_KIND_CELSIUS = _libsbml.UNIT_KIND_CELSIUS | |
| UNIT_KIND_COULOMB = _libsbml.UNIT_KIND_COULOMB | |
| UNIT_KIND_DIMENSIONLESS = _libsbml.UNIT_KIND_DIMENSIONLESS | |
| UNIT_KIND_FARAD = _libsbml.UNIT_KIND_FARAD | |
| UNIT_KIND_GRAM = _libsbml.UNIT_KIND_GRAM | |
| UNIT_KIND_GRAY = _libsbml.UNIT_KIND_GRAY | |
| UNIT_KIND_HENRY = _libsbml.UNIT_KIND_HENRY | |
| UNIT_KIND_HERTZ = _libsbml.UNIT_KIND_HERTZ | |
| UNIT_KIND_INVALID = _libsbml.UNIT_KIND_INVALID | |
| UNIT_KIND_ITEM = _libsbml.UNIT_KIND_ITEM | |
| UNIT_KIND_JOULE = _libsbml.UNIT_KIND_JOULE | |
| UNIT_KIND_KATAL = _libsbml.UNIT_KIND_KATAL | |
| UNIT_KIND_KELVIN = _libsbml.UNIT_KIND_KELVIN | |
| UNIT_KIND_KILOGRAM = _libsbml.UNIT_KIND_KILOGRAM | |
| UNIT_KIND_LITER = _libsbml.UNIT_KIND_LITER | |
| UNIT_KIND_LITRE = _libsbml.UNIT_KIND_LITRE | |
| UNIT_KIND_LUMEN = _libsbml.UNIT_KIND_LUMEN | |
| UNIT_KIND_LUX = _libsbml.UNIT_KIND_LUX | |
| UNIT_KIND_METER = _libsbml.UNIT_KIND_METER | |
| UNIT_KIND_METRE = _libsbml.UNIT_KIND_METRE | |
| UNIT_KIND_MOLE = _libsbml.UNIT_KIND_MOLE | |
| UNIT_KIND_NEWTON = _libsbml.UNIT_KIND_NEWTON | |
| UNIT_KIND_OHM = _libsbml.UNIT_KIND_OHM | |
| UNIT_KIND_PASCAL = _libsbml.UNIT_KIND_PASCAL | |
| UNIT_KIND_RADIAN = _libsbml.UNIT_KIND_RADIAN | |
| UNIT_KIND_SECOND = _libsbml.UNIT_KIND_SECOND | |
| UNIT_KIND_SIEMENS = _libsbml.UNIT_KIND_SIEMENS | |
| UNIT_KIND_SIEVERT = _libsbml.UNIT_KIND_SIEVERT | |
| UNIT_KIND_STERADIAN = _libsbml.UNIT_KIND_STERADIAN | |
| UNIT_KIND_TESLA = _libsbml.UNIT_KIND_TESLA | |
| UNIT_KIND_VOLT = _libsbml.UNIT_KIND_VOLT | |
| UNIT_KIND_WATT = _libsbml.UNIT_KIND_WATT | |
| UNIT_KIND_WEBER = _libsbml.UNIT_KIND_WEBER | |
| UnitsCheckOFF = _libsbml.UnitsCheckOFF | |
| UnitsCheckON = _libsbml.UnitsCheckON | |
| UnitsNotValidAttribute = _libsbml.UnitsNotValidAttribute | |
| UNKNOWN_QUALIFIER = _libsbml.UNKNOWN_QUALIFIER | |
| UnknownError = _libsbml.UnknownError | |
| UnrecognisedSBOTerm = _libsbml.UnrecognisedSBOTerm | |
| UnrecognizedElement = _libsbml.UnrecognizedElement | |
| UnrecognizedXMLElement = _libsbml.UnrecognizedXMLElement | |
| UnrecognizedXMLParserCode = _libsbml.UnrecognizedXMLParserCode | |
| ValuesFromTriggerTimeNeedDelay = _libsbml.ValuesFromTriggerTimeNeedDelay | |
| VariableNotValidAttribute = _libsbml.VariableNotValidAttribute | |
| VolumeLitreDefExponentNotOne = _libsbml.VolumeLitreDefExponentNotOne | |
| VolumeMetreDefExponentNot3 = _libsbml.VolumeMetreDefExponentNot3 | |
| XMLAttributeTypeMismatch = _libsbml.XMLAttributeTypeMismatch | |
| XMLBadColon = _libsbml.XMLBadColon | |
| XMLBadNumber = _libsbml.XMLBadNumber | |
| XMLBadUTF8Content = _libsbml.XMLBadUTF8Content | |
| XMLContentEmpty = _libsbml.XMLContentEmpty | |
| XMLEmptyValueNotPermitted = _libsbml.XMLEmptyValueNotPermitted | |
| XMLErrorCodesUpperBound = _libsbml.XMLErrorCodesUpperBound | |
| XMLExpectedQuotedString = _libsbml.XMLExpectedQuotedString | |
| XMLFileOperationError = _libsbml.XMLFileOperationError | |
| XMLFileUnreadable = _libsbml.XMLFileUnreadable | |
| XMLFileUnwritable = _libsbml.XMLFileUnwritable | |
| XMLNetworkAccessError = _libsbml.XMLNetworkAccessError | |
| XMLOutOfMemory = _libsbml.XMLOutOfMemory | |
| XMLTagMismatch = _libsbml.XMLTagMismatch | |
| XMLTranscoderError = _libsbml.XMLTranscoderError | |
| XMLUnexpectedEOF = _libsbml.XMLUnexpectedEOF | |
| XMLUnknownError = _libsbml.XMLUnknownError | |
| ZeroDCompartmentContainment = _libsbml.ZeroDCompartmentContainment | |
| ZeroDimensionalCompartmentConst = _libsbml.ZeroDimensionalCompartmentConst | |
| ZeroDimensionalCompartmentSize = _libsbml.ZeroDimensionalCompartmentSize | |
| ZeroDimensionalCompartmentUnits = _libsbml.ZeroDimensionalCompartmentUnits | |
| def libsbml.ASTNode_true | ( | args | ) |
Python method signature(s):
ASTNode_true(ASTNode node)int
Definition at line 684 of file libsbml.py.
| def libsbml.conditional_abspath | ( | filename | ) |
conditional_abspath (filename)
filename
Returns filename with an absolute path prepended, if necessary. Some combinations of platforms and underlying XML parsers *require* an absolute path to a filename while others do not. This function encapsulates the appropriate logic. It is used by readSBML() and SBMLReader.readSBML().
Definition at line 650 of file libsbml.py.
| def libsbml.endl | ( | args | ) |
| def libsbml.flush | ( | args | ) |
| def libsbml.formulaToString | ( | args | ) |
Python method signature(s):
formulaToString(ASTNode_t tree)char
Converts an ASTNode formula to a text string using a specific syntax for mathematical formulas.
| tree | the root of the ASTNode formula expression tree |
Definition at line 26880 of file libsbml.py.
| def libsbml.getLibSBMLDottedVersion | ( | ) |
Python method signature(s):
getLibSBMLDottedVersion()char
Returns the libSBML version as a string of the form '1.2.3'.
Definition at line 707 of file libsbml.py.
| def libsbml.getLibSBMLVersion | ( | ) |
Python method signature(s):
getLibSBMLVersion()int
Returns the libSBML version as an integer: version 1.2.3 becomes 10203.
Definition at line 692 of file libsbml.py.
| def libsbml.getLibSBMLVersionString | ( | ) |
Python method signature(s):
getLibSBMLVersionString()char
Returns the libSBML version as a string: version 1.2.3 becomes '10203'.
Definition at line 722 of file libsbml.py.
| def libsbml.parseFormula | ( | args | ) |
Python method signature(s):
parseFormula(char formula)ASTNode_t
Parses a text-string mathematical formula and returns a representation as an Abstract Syntax Tree.
| formula | the string containing the mathematical formula. |
Definition at line 26845 of file libsbml.py.
| def libsbml.RDFAnnotationParser_createAnnotation | ( | ) |
Python method signature(s):
RDFAnnotationParser_createAnnotation()XMLNode
Creates a blank annotation and returns the XMLNode corresonding to it.
The annotation created by this method is a completely empty SBML <annotation> element. One use for this is to then call createRDFAnnotation() to construct RDF content for this empty annotation.
Definition at line 33314 of file libsbml.py.
| def libsbml.RDFAnnotationParser_createCVTerms | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_createCVTerms(SBase object)XMLNode
Takes a list of CVTerms and creates a the RDF 'Description' element.
This essentially takes the given SBML object, reads out the CVTerms attached to it, calls createRDFDescriptiom() to create an RDF 'Description' element to hold the terms and adds each term with appropriate qualifiers.
| object | the SBML object to start from |
Definition at line 33408 of file libsbml.py.
| def libsbml.RDFAnnotationParser_createRDFAnnotation | ( | ) |
Python method signature(s):
RDFAnnotationParser_createRDFAnnotation()XMLNode
Creates blank RDF annotation content organized in the form defined in Section 6 of the SBML Level 2 Version 4 specification .
The annotation created by this method has namespace declarations for all the relevant XML namespaces used in RDF annotations and also has an empty RDF element. Note that this is not the containing <annotation> element; the method createAnnotation() is available for that purpose.
Definition at line 33336 of file libsbml.py.
| def libsbml.RDFAnnotationParser_createRDFDescription | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_createRDFDescription(SBase object)XMLNode
Takes an SBML object and creates an XMLNode corresponding to an RDF 'Description' element.
This method is a handy way of creating RDF description objects linked by the appropriate 'metaid' field, for insertion into RDF annotations in a model. (Note that this method does not create a complete annotation; it only creates a description element. For creating empty RDF annotations that can serve as containers for RDF descriptions, see createRDFAnnotation().
| object | the object to be annotated |
Definition at line 33380 of file libsbml.py.
| def libsbml.RDFAnnotationParser_deleteRDFAnnotation | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_deleteRDFAnnotation(XMLNode annotation)XMLNode
Deletes any RDF annotation found in the given XMLNode tree and returns any remaining annotation content.
The name of the given XMLNode must be 'annotation', or else this method returns NULL.
| annotation | the annotation tree within which the RDF annotation is to be found and deleted |
Definition at line 33358 of file libsbml.py.
| def libsbml.RDFAnnotationParser_parseCVTerms | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_parseCVTerms(SBase object)XMLNode
Takes a list of CVTerms and creates a complete SBML annotation around it.
This essentially takes the given SBML object, calls createCVTerms to read out the CVTerms attached to it, calls createRDFAnnotation() to create an RDF annotation to hold the terms, and finally calls createAnnotation() to wrap the result as an SBML <annotation> element.
| object | the SBML object to start from |
Definition at line 33431 of file libsbml.py.
| def libsbml.RDFAnnotationParser_parseModelHistory | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_parseModelHistory(Model object)XMLNode
Takes an SBML Model object, reads off the model history information stored in it, and creates a complete SBML annotation to store that history.
| object | a Model |
Definition at line 33455 of file libsbml.py.
| def libsbml.RDFAnnotationParser_parseRDFAnnotation | ( | args | ) |
Python method signature(s):
parseRDFAnnotation(XMLNode annotation)ModelHistory RDFAnnotationParser_parseRDFAnnotation(XMLNode annotation, CVTermList CVTerms)
Parses an annotation into a ModelHistory class instance.
This is used to take an annotation that has been read into an SBML model, identify the RDF elements representing model history information, and create a list of corresponding CVTerms.
| annotation | XMLNode containing the annotation. |
Definition at line 33475 of file libsbml.py.
| def libsbml.readMathMLFromString | ( | args | ) |
Python method signature(s):
readMathMLFromString(char xml)ASTNode_t
Reads the MathML from the given XML string, constructs a corresponding abstract syntax tree, and returns a pointer to the root of the tree.
| xml | a string containing a full MathML expression |
Definition at line 25373 of file libsbml.py.
| def libsbml.readSBML | ( | args | ) |
Python method signature(s):
readSBML(filename)SBMLDocument
Reads an SBML document from the given file. If filename does not exist or is not an SBML file, a fatal error will be logged. Errors can be identified by their unique ids, e.g.:
d = readSBML(filename)
if d.getNumErrors() > 0: pm = d.getError(0) if pm.getErrorId() == libsbml.XMLFileUnreadable if pm.getErrorId() == libsbml.XMLTagMismatch:
Definition at line 664 of file libsbml.py.
| def libsbml.readSBMLFromFile | ( | args | ) |
Python method signature(s):
readSBMLFromFile(char filename)SBMLDocument_t
Reads an SBML document from the given file filename.
If filename does not exist, or it is not an SBML file, an error will be logged in the error log of the SBMLDocument object returned by this method. Calling programs can inspect this error log to determine the nature of the problem. Please refer to the definition of SBMLDocument for more information about the error reporting mechanism.
Definition at line 1027 of file libsbml.py.
| def libsbml.readSBMLFromString | ( | args | ) |
Python method signature(s):
readSBMLFromString(char xml)SBMLDocument_t
Reads an SBML document from a string assumed to be in XML format.
If the string does not begin with XML declaration,
<?xml version='1.0' encoding='UTF-8'?>
an XML declaration string will be prepended.
This method will report an error if the given string xml is not SBML. The error will be logged in the error log of the SBMLDocument object returned by this method. Calling programs can inspect this error log to determine the nature of the problem. Please refer to the definition of SBMLDocument for more information about the error reporting mechanism.
Definition at line 1048 of file libsbml.py.
| def libsbml.SBMLDocument_getDefaultLevel | ( | ) |
Python method signature(s):
SBMLDocument_getDefaultLevel()unsigned int
The default SBML Level of new SBMLDocument objects.
This 'default level' corresponds to the most recent SBML specification Level available at the time this version of libSBML was released. For this copy of libSBML, the value is 2. The default Level is used by SBMLDocument if no Level is explicitly specified at the time of the construction of an SBMLDocument instance.
Definition at line 7024 of file libsbml.py.
| def libsbml.SBMLDocument_getDefaultVersion | ( | ) |
Python method signature(s):
SBMLDocument_getDefaultVersion()unsigned int
The default Version of new SBMLDocument objects.
This 'default version' corresponds to the most recent SBML Version within the most recent Level of SBML available at the time this version of libSBML was released. For this copy of libSBML, the value is 4. The default Version is used by SBMLDocument if no Version is explicitly specified at the time of the construction of an SBMLDocument instance.
Definition at line 7047 of file libsbml.py.
| def libsbml.SBMLNamespaces_getSBMLNamespaceURI | ( | args | ) |
Python method signature(s):
SBMLNamespaces_getSBMLNamespaceURI(unsigned int level, unsigned int version)string
Returns a string representing the SBML XML namespace for the given level and version of SBML.
| level | the SBML level | |
| version | the SBML version |
Definition at line 25352 of file libsbml.py.
| def libsbml.SBMLReader_hasBzip2 | ( | ) |
Python method signature(s):
SBMLReader_hasBzip2()bool
Predicate returning true or false depending on whether libSBML is linked with bzip2 at compile time.
true if bzip2 is linked, false otherwise. Definition at line 1010 of file libsbml.py.
| def libsbml.SBMLReader_hasZlib | ( | ) |
Python method signature(s):
SBMLReader_hasZlib()bool
Predicate returning true or false depending on whether libSBML is linked with zlib at compile time.
true if zlib is linked, false otherwise. Definition at line 994 of file libsbml.py.
| def libsbml.SBMLTypeCode_toString | ( | args | ) |
Python method signature(s):
SBMLTypeCode_toString(SBMLTypeCode_t tc)char
This method takes an SBML type code and returns a string representing the code.
This method takes a type code as argument, and returns a string name corresponding to that code. For example, passing it the type code SBML_COMPARTMENT will return the string 'Compartment'.
Definition at line 1417 of file libsbml.py.
| def libsbml.SBMLWriter_hasBzip2 | ( | ) |
Python method signature(s):
SBMLWriter_hasBzip2()bool
Predicate returning true or false depending on whether underlying libSBML is linked with bzip2.
LibSBML supports reading and writing files compressed with either bzip2 or zip/gzip compression. The facility depends on libSBML having been compiled with the necessary support libraries. This method allows a calling program to inquire whether that is the case for the copy of libSBML it is running.
true if libSBML is linked with bzip2, false otherwise. Definition at line 1306 of file libsbml.py.
| def libsbml.SBMLWriter_hasZlib | ( | ) |
Python method signature(s):
SBMLWriter_hasZlib()bool
Predicate returning true or false depending on whether underlying libSBML is linked with zlib.
LibSBML supports reading and writing files compressed with either bzip2 or zip/gzip compression. The facility depends on libSBML having been compiled with the necessary support libraries. This method allows a calling program to inquire whether that is the case for the copy of libSBML it is running.
true if libSBML is linked with zlib, false otherwise. Definition at line 1284 of file libsbml.py.
| def libsbml.SBO_checkTerm | ( | args | ) |
Python method signature(s):
checkTerm(string sboTerm)bool SBO_checkTerm(int sboTerm)
bool
Checks the format of the given SBO integer portion.
Definition at line 24559 of file libsbml.py.
| def libsbml.SBO_intToString | ( | args | ) |
Python method signature(s):
SBO_intToString(int sboTerm)string
Returns the integer as a correctly formatted SBO string.
Definition at line 24524 of file libsbml.py.
| def libsbml.SBO_isConservationLaw | ( | args | ) |
Python method signature(s):
SBO_isConservationLaw(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24419 of file libsbml.py.
| def libsbml.SBO_isContinuousFramework | ( | args | ) |
Python method signature(s):
SBO_isContinuousFramework(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24464 of file libsbml.py.
| def libsbml.SBO_isDiscreteFramework | ( | args | ) |
Python method signature(s):
SBO_isDiscreteFramework(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24479 of file libsbml.py.
| def libsbml.SBO_isEntity | ( | args | ) |
Python method signature(s):
SBO_isEntity(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24374 of file libsbml.py.
| def libsbml.SBO_isEvent | ( | args | ) |
Python method signature(s):
SBO_isEvent(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24314 of file libsbml.py.
| def libsbml.SBO_isFunctionalCompartment | ( | args | ) |
Python method signature(s):
SBO_isFunctionalCompartment(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24449 of file libsbml.py.
| def libsbml.SBO_isFunctionalEntity | ( | args | ) |
Python method signature(s):
SBO_isFunctionalEntity(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24389 of file libsbml.py.
| def libsbml.SBO_isInteraction | ( | args | ) |
Python method signature(s):
SBO_isInteraction(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24359 of file libsbml.py.
| def libsbml.SBO_isKineticConstant | ( | args | ) |
Python method signature(s):
SBO_isKineticConstant(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24239 of file libsbml.py.
| def libsbml.SBO_isLogicalFramework | ( | args | ) |
Python method signature(s):
SBO_isLogicalFramework(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24494 of file libsbml.py.
| def libsbml.SBO_isMaterialEntity | ( | args | ) |
Python method signature(s):
SBO_isMaterialEntity(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24404 of file libsbml.py.
| def libsbml.SBO_isMathematicalExpression | ( | args | ) |
Python method signature(s):
SBO_isMathematicalExpression(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24224 of file libsbml.py.
| def libsbml.SBO_isModellingFramework | ( | args | ) |
Python method signature(s):
SBO_isModellingFramework(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24209 of file libsbml.py.
| def libsbml.SBO_isModifier | ( | args | ) |
Python method signature(s):
SBO_isModifier(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24284 of file libsbml.py.
| def libsbml.SBO_isObselete | ( | args | ) |
Python method signature(s):
SBO_isObselete(unsigned int term)bool
Function for checking whether the SBO term is obselete.
Definition at line 24509 of file libsbml.py.
| def libsbml.SBO_isParticipant | ( | args | ) |
Python method signature(s):
SBO_isParticipant(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24344 of file libsbml.py.
| def libsbml.SBO_isParticipantRole | ( | args | ) |
Python method signature(s):
SBO_isParticipantRole(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24194 of file libsbml.py.
| def libsbml.SBO_isPhysicalParticipant | ( | args | ) |
Python method signature(s):
SBO_isPhysicalParticipant(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24329 of file libsbml.py.
| def libsbml.SBO_isProduct | ( | args | ) |
Python method signature(s):
SBO_isProduct(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24269 of file libsbml.py.
| def libsbml.SBO_isQuantitativeParameter | ( | args | ) |
Python method signature(s):
SBO_isQuantitativeParameter(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24179 of file libsbml.py.
| def libsbml.SBO_isRateLaw | ( | args | ) |
Python method signature(s):
SBO_isRateLaw(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24299 of file libsbml.py.
| def libsbml.SBO_isReactant | ( | args | ) |
Python method signature(s):
SBO_isReactant(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24254 of file libsbml.py.
| def libsbml.SBO_isSteadyStateExpression | ( | args | ) |
Python method signature(s):
SBO_isSteadyStateExpression(unsigned int term)bool
Function for checking the SBO term is from correct part of SBO.
Definition at line 24434 of file libsbml.py.
| def libsbml.SBO_stringToInt | ( | args | ) |
Python method signature(s):
SBO_stringToInt(string sboTerm)int
Returns the string as a correctly formatted SBO integer portion.
Definition at line 24542 of file libsbml.py.
| def libsbml.swig_import_helper | ( | ) |
Definition at line 11 of file libsbml.py.
| def libsbml.SyntaxChecker_hasExpectedXHTMLSyntax | ( | args | ) |
Python method signature(s):
hasExpectedXHTMLSyntax(XMLNode xhtml, SBMLNamespaces sbmlns = None)bool SyntaxChecker_hasExpectedXHTMLSyntax(XMLNode xhtml)
bool
Predicate returning true or false depending on whether the argument XMLNode represents XHTML that conforms to the requirements of the SBML specification.
| xhtml | the XMLNode to be checked for conformance. | |
| sbmlns | the SBMLNamespaces associated with the object. |
true if the XMLNode conforms, false otherwise.Definition at line 24785 of file libsbml.py.
| def libsbml.SyntaxChecker_isValidSBMLSId | ( | args | ) |
Python method signature(s):
SyntaxChecker_isValidSBMLSId(string sid)bool
Predicate returning true or false depending on whether the argument string conforms to the SBML type SId.
| sid | string to be checked for conformance |
true if the string conforms to type SId, false otherwise.Definition at line 24708 of file libsbml.py.
| def libsbml.SyntaxChecker_isValidUnitSId | ( | args | ) |
Python method signature(s):
SyntaxChecker_isValidUnitSId(string units)bool
Predicate returning true or false depending on whether the argument string conforms to the SBML type UnitSId.
| units | string to be checked for conformance |
true if the string conforms to type UnitSId, false otherwise.Definition at line 24758 of file libsbml.py.
| def libsbml.SyntaxChecker_isValidXMLID | ( | args | ) |
Python method signature(s):
SyntaxChecker_isValidXMLID(string id)bool
Predicate returning true or false depending on whether the argument string conforms to the XML 1.0 type ID.
| id | string to be checked for conformance |
true if the string conforms to type ID, false otherwise.Definition at line 24734 of file libsbml.py.
| def libsbml.Unit_areEquivalent | ( | args | ) |
Python method signature(s):
Unit_areEquivalent(Unit unit1, Unit unit2)bool
Predicate returning true or false depending on whether Unit objects are equivalent.
Two Unit objects are considered to be equivalent if their 'kind' and 'exponent' attributes are equal. (Contrast this to the method Unit.areIdentical(Unit * unit1, Unit * unit2), which compares Unit objects with respect to all attributes, not just the kind and exponent.)
true if the 'kind' and 'exponent' attributes of unit1 are identical to the kind and exponent attributes of unit2, false otherwise.Definition at line 9184 of file libsbml.py.
| def libsbml.Unit_areIdentical | ( | args | ) |
Python method signature(s):
Unit_areIdentical(Unit unit1, Unit unit2)bool
Predicate returning true or false depending on whether two Unit objects are identical.
Two Unit objects are considered to be identical if they match in all attributes. (Contrast this to the method Unit.areEquivalent(Unit * unit1, Unit * unit2), which compares Unit objects only with respect to certain attributes.)
true if all the attributes of unit1 are identical to the attributes of unit2, false otherwise.Definition at line 9157 of file libsbml.py.
| def libsbml.Unit_convertToSI | ( | args | ) |
Python method signature(s):
Unit_convertToSI(Unit unit)UnitDefinition
Returns a UnitDefinition object which contains the argument Unit converted to the appropriate SI unit.
| unit | the Unit object to convert to SI |
Definition at line 9269 of file libsbml.py.
| def libsbml.Unit_isBuiltIn | ( | args | ) |
Python method signature(s):
Unit_isBuiltIn(string name, unsigned int level)bool
Predicate to test whether a given string is the name of a predefined SBML unit.
| name | a string to be tested against the predefined unit names | |
| level | the Level of SBML for which the determination should be made. This is necessary because there are a few small differences in allowed units between SBML Level 1 and Level 2. |
true if name is one of the five SBML predefined unit identifiers ('substance', 'volume', 'area', 'length' or 'time'), false otherwise.'length' and 'area' were added in Level 2 Version 1 Definition at line 9093 of file libsbml.py.
| def libsbml.Unit_isUnitKind | ( | args | ) |
Python method signature(s):
Unit_isUnitKind(string name, unsigned int level, unsigned int version)bool
Predicate to test whether a given string is the name of a valid base unit in SBML (such as 'gram' or 'mole').
This method exists because prior to SBML Level 2 Version 3, an enumeration called UnitKind was defined by SBML. This enumeration was removed in SBML Level 2 Version 3 and its values were folded into the space of values of a type called UnitSId. This method therefore has less significance in SBML Level 2 Version 3 and Level 2 Version 4, but remains for backward compatibility and support for reading models in older Versions of Level 2.
| name | a string to be tested | |
| level | an unsigned int representing the SBML specification Level | |
| version | an unsigned int representing the SBML specification Version |
true if name is a valid UnitKind, false otherwiseDefinition at line 9120 of file libsbml.py.
| def libsbml.Unit_merge | ( | args | ) |
Python method signature(s):
Unit_merge(Unit unit1, Unit unit2)
Merges two Unit objects with the same 'kind' attribute value into a single Unit.
For example, the following,
<unit kind='metre' exponent='2'/> <unit kind='metre' exponent='1'/>
<unit kind='metre' exponent='3'/>
| unit1 | the first Unit object; the result of the operation is left as a new version of this unit, modified in-place. | |
| unit2 | the second Unit object to merge with the first |
Definition at line 9240 of file libsbml.py.
| def libsbml.Unit_removeScale | ( | args | ) |
Python method signature(s):
Unit_removeScale(Unit unit)int
Manipulates the attributes of the Unit to express the unit with the value of the scale attribute reduced to zero.
For example, 1 millimetre can be expressed as a Unit with kind='metre' multiplier='1' scale='-3' exponent='1'. It can also be expressed as a Unit with kind='metre' multiplier='0.001' scale='0' exponent='1'.
| unit | the Unit object to manipulate. |
Definition at line 9213 of file libsbml.py.
| def libsbml.UnitDefinition_areEquivalent | ( | args | ) |
Python method signature(s):
UnitDefinition_areEquivalent(UnitDefinition ud1, UnitDefinition ud2)bool
Predicate returning true or false depending on whether two UnitDefinition objects are equivalent.
For the purposes of performing this comparison, two UnitDefinition objects are considered equivalent when they contain equivalent list of Unit objects. Unit objects are in turn considered equivalent if they satisfy the predicate Unit.areEquivalent(). The predicate tests a subset of the objects's attributes.
| ud1 | the first UnitDefinition object to compare | |
| ud2 | the second UnitDefinition object to compare |
true if all the Unit objects in ud1 are equivalent to the Unit objects in ud2, false otherwise.Unit.areEquivalent(Unit * unit1, Unit * unit2)
Definition at line 10505 of file libsbml.py.
| def libsbml.UnitDefinition_areIdentical | ( | args | ) |
Python method signature(s):
UnitDefinition_areIdentical(UnitDefinition ud1, UnitDefinition ud2)bool
Predicate returning true or false depending on whether two UnitDefinition objects are identical.
For the purposes of performing this comparison, two UnitDefinition objects are considered identical when they contain identical lists of Unit objects. Pairs of Unit objects in the lists are in turn considered identical if they satisfy the predicate Unit.areIdentical(). The predicate compares every attribute of the Unit objects.
| ud1 | the first UnitDefinition object to compare | |
| ud2 | the second UnitDefinition object to compare |
true if all the Unit objects in ud1 are identical to the Unit objects of ud2, false otherwise.Unit.areIdentical(Unit * unit1, Unit * unit2)
Definition at line 10475 of file libsbml.py.
| def libsbml.UnitDefinition_combine | ( | args | ) |
Python method signature(s):
UnitDefinition_combine(UnitDefinition ud1, UnitDefinition ud2)UnitDefinition
Combines two UnitDefinition objects into a single UnitDefinition object which expresses the product of the units of the two UnitDefinition's.
| ud1 | the first UnitDefinition object | |
| ud2 | the second UnitDefinition object |
Definition at line 10535 of file libsbml.py.
| def libsbml.UnitDefinition_convertToSI | ( | args | ) |
Python method signature(s):
UnitDefinition_convertToSI(UnitDefinition arg0)UnitDefinition
Convert a given UnitDefinition into a new UnitDefinition object that uses SI units.
| ud | the UnitDefinition object to convert to SI |
Definition at line 10456 of file libsbml.py.
| def libsbml.UnitDefinition_printUnits | ( | args | ) |
Python method signature(s):
printUnits(UnitDefinition ud, bool compact = False)string UnitDefinition_printUnits(UnitDefinition ud)
string
Returns a string that expresses the unit definition represented by this UnitDefinition object.
For example printUnits applied to
<unitDefinition>
<listOfUnits>
<unit kind='metre' exponent='1'/>
<unit kind='second' exponent='-2'/>
</listOfUnits>
<unitDefinition>
'metre (exponent = 1, multiplier = 1, scale = 0) second (exponent = -2, multiplier = 1, scale = 0)' or, if compact = true, the string '(1 metre)^1 (1 second)^-2' This may be useful for printing unit information to human users, or in debugging, or other situations.
| ud | the UnitDefinition object | |
| compact | boolean indicating whether the compact form should be used (defaults to false) |
Definition at line 10556 of file libsbml.py.
| def libsbml.UnitDefinition_reorder | ( | args | ) |
Python method signature(s):
UnitDefinition_reorder(UnitDefinition ud)
Orders alphabetically the Unit objects within the ListOfUnits of a UnitDefinition.
| ud | the UnitDefinition object whose units are to be reordered. |
Definition at line 10440 of file libsbml.py.
| def libsbml.UnitDefinition_simplify | ( | args | ) |
Python method signature(s):
UnitDefinition_simplify(UnitDefinition ud)
Simplifies the UnitDefinition so that any Unit objects occurring within the ListOfUnits occurs only once.
For example, the following definition,
<unitDefinition>
<listOfUnits>
<unit kind='metre' exponent='1'/>
<unit kind='metre' exponent='2'/>
</listOfUnits>
<unitDefinition>
<unitDefinition>
<listOfUnits>
<unit kind='metre' exponent='3'/>
</listOfUnits>
<unitDefinition>
| ud | the UnitDefinition object to be simplified. |
Definition at line 10406 of file libsbml.py.
| def libsbml.UnitKind_equals | ( | args | ) |
Python method signature(s):
UnitKind_equals(UnitKind_t uk1, UnitKind_t uk2)int
Tests for logical equality between two given UnitKind_t values.
This function behaves exactly like C's == operator, except for the following two cases:
== UNIT_KIND_LITRE == UNIT_KIND_METRE
| uk1 | a UnitKind_t enumeration value | |
| uk2 | the UnitKind_t enumeration value to compare to uk1 |
Definition at line 7785 of file libsbml.py.
| def libsbml.UnitKind_forName | ( | args | ) |
Python method signature(s):
UnitKind_forName(char name)UnitKind_t
Converts a string to its corresponding UnitKind_t enumeration value.
| name | a string, the name of a predefined base unit in SBML |
Definition at line 7816 of file libsbml.py.
| def libsbml.UnitKind_isValidUnitKindString | ( | args | ) |
Python method signature(s):
UnitKind_isValidUnitKindString(char string, unsigned int level, unsigned int version)int
Predicate for testing whether a given string corresponds to a predefined UnitKind_t enumeration value.
Definition at line 7860 of file libsbml.py.
| def libsbml.UnitKind_toString | ( | args | ) |
Python method signature(s):
UnitKind_toString(UnitKind_t uk)char
Converts a UnitKind_t enumeration value to a text string equivalent.
| uk | the UnitKind_t value to convert |
For more information about the UnitKind_t enumeration, please refer to the class documentation for Unit.
Definition at line 7837 of file libsbml.py.
| def libsbml.writeMathMLToString | ( | args | ) |
Python method signature(s):
writeMathMLToString(ASTNode_t node)char
Writes the given ASTNode (and its children) to a string as MathML, and returns the string.
| node | the root of an AST to write out to the stream. |
Definition at line 25393 of file libsbml.py.
| def libsbml.writeSBML | ( | args | ) |
Python method signature(s):
writeSBML(SBMLDocument_t d, char filename)int
Writes the given SBML document to filename. This convenience function is functionally equivalent to:
SBMLWriter_writeSBML(SBMLWriter_create(), d, filename);
Definition at line 1330 of file libsbml.py.
| def libsbml.writeSBMLToString | ( | args | ) |
Python method signature(s):
writeSBMLToString(SBMLDocument_t d)char
Writes the given SBML document to an in-memory string and returns a pointer to it. The string is owned by the caller and should be freed (with free()) when no longer needed. This convenience function is functionally equivalent to:
SBMLWriter_writeSBMLToString(SBMLWriter_create(), d);
Definition at line 1349 of file libsbml.py.
| def libsbml.XMLError_getStandardMessage | ( | args | ) |
Python method signature(s):
XMLError_getStandardMessage(int code)string
Returns a copy of the message string associated with the given predefined XMLError code.
| code | the error code whose message is sought; it must be a predefined value from |
Definition at line 30306 of file libsbml.py.
| def libsbml.XMLNode_convertStringToXMLNode | ( | args | ) |
Python method signature(s):
convertStringToXMLNode(string xmlstr, XMLNamespaces xmlns = None)XMLNode XMLNode_convertStringToXMLNode(string xmlstr)
XMLNode
Returns an XMLNode which is derived from a string containing XML content.
The XML namespace must be defined using argument xmlns if the corresponding XML namespace attribute is not part of the string of the first argument.
| xmlstr | string to be converted to a XML node. | |
| xmlns | XMLNamespaces the namespaces to set (default value is NULL). |
html, body, annotation, notes. In the dummy root node, each top-level element in the given XML string is contained as a child XMLNode. XMLToken.isEOF() can be used to identify if the returned XMLNode object is a dummy node.Definition at line 29035 of file libsbml.py.
| def libsbml.XMLNode_convertXMLNodeToString | ( | args | ) |
| tuple libsbml._libsbml = swig_import_helper() |
Definition at line 26 of file libsbml.py.
| int libsbml._newclass = 0 |
Definition at line 67 of file libsbml.py.
| libsbml.AllChecksON = _libsbml.AllChecksON |
Definition at line 6072 of file libsbml.py.
| libsbml.AnnotationNotesNotAllowedLevel1 = _libsbml.AnnotationNotesNotAllowedLevel1 |
Definition at line 30613 of file libsbml.py.
| libsbml.ApplyCiMustBeModelComponent = _libsbml.ApplyCiMustBeModelComponent |
Definition at line 30554 of file libsbml.py.
| libsbml.ApplyCiMustBeUserFunction = _libsbml.ApplyCiMustBeUserFunction |
Definition at line 30553 of file libsbml.py.
| libsbml.ArgsToEqNeedSameType = _libsbml.ArgsToEqNeedSameType |
Definition at line 30550 of file libsbml.py.
| libsbml.AssignmentToConstantEntity = _libsbml.AssignmentToConstantEntity |
Definition at line 30666 of file libsbml.py.
| libsbml.AssignRuleCompartmentMismatch = _libsbml.AssignRuleCompartmentMismatch |
Definition at line 30574 of file libsbml.py.
| libsbml.AssignRuleParameterMismatch = _libsbml.AssignRuleParameterMismatch |
Definition at line 30576 of file libsbml.py.
| libsbml.AssignRuleSpeciesMismatch = _libsbml.AssignRuleSpeciesMismatch |
Definition at line 30575 of file libsbml.py.
| libsbml.AST_CONSTANT_E = _libsbml.AST_CONSTANT_E |
Definition at line 25426 of file libsbml.py.
| libsbml.AST_CONSTANT_FALSE = _libsbml.AST_CONSTANT_FALSE |
Definition at line 25427 of file libsbml.py.
| libsbml.AST_CONSTANT_PI = _libsbml.AST_CONSTANT_PI |
Definition at line 25428 of file libsbml.py.
| libsbml.AST_CONSTANT_TRUE = _libsbml.AST_CONSTANT_TRUE |
Definition at line 25429 of file libsbml.py.
| libsbml.AST_DIVIDE = _libsbml.AST_DIVIDE |
Definition at line 25418 of file libsbml.py.
| libsbml.AST_FUNCTION = _libsbml.AST_FUNCTION |
Definition at line 25431 of file libsbml.py.
| libsbml.AST_FUNCTION_ABS = _libsbml.AST_FUNCTION_ABS |
Definition at line 25432 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCCOS = _libsbml.AST_FUNCTION_ARCCOS |
Definition at line 25433 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCCOSH = _libsbml.AST_FUNCTION_ARCCOSH |
Definition at line 25434 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCCOT = _libsbml.AST_FUNCTION_ARCCOT |
Definition at line 25435 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCCOTH = _libsbml.AST_FUNCTION_ARCCOTH |
Definition at line 25436 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCCSC = _libsbml.AST_FUNCTION_ARCCSC |
Definition at line 25437 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCCSCH = _libsbml.AST_FUNCTION_ARCCSCH |
Definition at line 25438 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCSEC = _libsbml.AST_FUNCTION_ARCSEC |
Definition at line 25439 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCSECH = _libsbml.AST_FUNCTION_ARCSECH |
Definition at line 25440 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCSIN = _libsbml.AST_FUNCTION_ARCSIN |
Definition at line 25441 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCSINH = _libsbml.AST_FUNCTION_ARCSINH |
Definition at line 25442 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCTAN = _libsbml.AST_FUNCTION_ARCTAN |
Definition at line 25443 of file libsbml.py.
| libsbml.AST_FUNCTION_ARCTANH = _libsbml.AST_FUNCTION_ARCTANH |
Definition at line 25444 of file libsbml.py.
| libsbml.AST_FUNCTION_CEILING = _libsbml.AST_FUNCTION_CEILING |
Definition at line 25445 of file libsbml.py.
| libsbml.AST_FUNCTION_COS = _libsbml.AST_FUNCTION_COS |
Definition at line 25446 of file libsbml.py.
| libsbml.AST_FUNCTION_COSH = _libsbml.AST_FUNCTION_COSH |
Definition at line 25447 of file libsbml.py.
| libsbml.AST_FUNCTION_COT = _libsbml.AST_FUNCTION_COT |
Definition at line 25448 of file libsbml.py.
| libsbml.AST_FUNCTION_COTH = _libsbml.AST_FUNCTION_COTH |
Definition at line 25449 of file libsbml.py.
| libsbml.AST_FUNCTION_CSC = _libsbml.AST_FUNCTION_CSC |
Definition at line 25450 of file libsbml.py.
| libsbml.AST_FUNCTION_CSCH = _libsbml.AST_FUNCTION_CSCH |
Definition at line 25451 of file libsbml.py.
| libsbml.AST_FUNCTION_DELAY = _libsbml.AST_FUNCTION_DELAY |
Definition at line 25452 of file libsbml.py.
| libsbml.AST_FUNCTION_EXP = _libsbml.AST_FUNCTION_EXP |
Definition at line 25453 of file libsbml.py.
| libsbml.AST_FUNCTION_FACTORIAL = _libsbml.AST_FUNCTION_FACTORIAL |
Definition at line 25454 of file libsbml.py.
| libsbml.AST_FUNCTION_FLOOR = _libsbml.AST_FUNCTION_FLOOR |
Definition at line 25455 of file libsbml.py.
| libsbml.AST_FUNCTION_LN = _libsbml.AST_FUNCTION_LN |
Definition at line 25456 of file libsbml.py.
| libsbml.AST_FUNCTION_LOG = _libsbml.AST_FUNCTION_LOG |
Definition at line 25457 of file libsbml.py.
| libsbml.AST_FUNCTION_PIECEWISE = _libsbml.AST_FUNCTION_PIECEWISE |
Definition at line 25458 of file libsbml.py.
| libsbml.AST_FUNCTION_POWER = _libsbml.AST_FUNCTION_POWER |
Definition at line 25459 of file libsbml.py.
| libsbml.AST_FUNCTION_ROOT = _libsbml.AST_FUNCTION_ROOT |
Definition at line 25460 of file libsbml.py.
| libsbml.AST_FUNCTION_SEC = _libsbml.AST_FUNCTION_SEC |
Definition at line 25461 of file libsbml.py.
| libsbml.AST_FUNCTION_SECH = _libsbml.AST_FUNCTION_SECH |
Definition at line 25462 of file libsbml.py.
| libsbml.AST_FUNCTION_SIN = _libsbml.AST_FUNCTION_SIN |
Definition at line 25463 of file libsbml.py.
| libsbml.AST_FUNCTION_SINH = _libsbml.AST_FUNCTION_SINH |
Definition at line 25464 of file libsbml.py.
| libsbml.AST_FUNCTION_TAN = _libsbml.AST_FUNCTION_TAN |
Definition at line 25465 of file libsbml.py.
| libsbml.AST_FUNCTION_TANH = _libsbml.AST_FUNCTION_TANH |
Definition at line 25466 of file libsbml.py.
| libsbml.AST_INTEGER = _libsbml.AST_INTEGER |
Definition at line 25420 of file libsbml.py.
| libsbml.AST_LAMBDA = _libsbml.AST_LAMBDA |
Definition at line 25430 of file libsbml.py.
| libsbml.AST_LOGICAL_AND = _libsbml.AST_LOGICAL_AND |
Definition at line 25467 of file libsbml.py.
| libsbml.AST_LOGICAL_NOT = _libsbml.AST_LOGICAL_NOT |
Definition at line 25468 of file libsbml.py.
| libsbml.AST_LOGICAL_OR = _libsbml.AST_LOGICAL_OR |
Definition at line 25469 of file libsbml.py.
| libsbml.AST_LOGICAL_XOR = _libsbml.AST_LOGICAL_XOR |
Definition at line 25470 of file libsbml.py.
| libsbml.AST_MINUS = _libsbml.AST_MINUS |
Definition at line 25416 of file libsbml.py.
| libsbml.AST_NAME = _libsbml.AST_NAME |
Definition at line 25424 of file libsbml.py.
| libsbml.AST_NAME_TIME = _libsbml.AST_NAME_TIME |
Definition at line 25425 of file libsbml.py.
| libsbml.AST_PLUS = _libsbml.AST_PLUS |
Definition at line 25415 of file libsbml.py.
| libsbml.AST_POWER = _libsbml.AST_POWER |
Definition at line 25419 of file libsbml.py.
| libsbml.AST_RATIONAL = _libsbml.AST_RATIONAL |
Definition at line 25423 of file libsbml.py.
| libsbml.AST_REAL = _libsbml.AST_REAL |
Definition at line 25421 of file libsbml.py.
| libsbml.AST_REAL_E = _libsbml.AST_REAL_E |
Definition at line 25422 of file libsbml.py.
| libsbml.AST_RELATIONAL_EQ = _libsbml.AST_RELATIONAL_EQ |
Definition at line 25471 of file libsbml.py.
| libsbml.AST_RELATIONAL_GEQ = _libsbml.AST_RELATIONAL_GEQ |
Definition at line 25472 of file libsbml.py.
| libsbml.AST_RELATIONAL_GT = _libsbml.AST_RELATIONAL_GT |
Definition at line 25473 of file libsbml.py.
| libsbml.AST_RELATIONAL_LEQ = _libsbml.AST_RELATIONAL_LEQ |
Definition at line 25474 of file libsbml.py.
| libsbml.AST_RELATIONAL_LT = _libsbml.AST_RELATIONAL_LT |
Definition at line 25475 of file libsbml.py.
| libsbml.AST_RELATIONAL_NEQ = _libsbml.AST_RELATIONAL_NEQ |
Definition at line 25476 of file libsbml.py.
| libsbml.AST_TIMES = _libsbml.AST_TIMES |
Definition at line 25417 of file libsbml.py.
| libsbml.AST_UNKNOWN = _libsbml.AST_UNKNOWN |
Definition at line 25477 of file libsbml.py.
| libsbml.BadCsymbolDefinitionURLValue = _libsbml.BadCsymbolDefinitionURLValue |
Definition at line 30544 of file libsbml.py.
| libsbml.BadlyFormedXML = _libsbml.BadlyFormedXML |
Definition at line 29454 of file libsbml.py.
| libsbml.BadMathML = _libsbml.BadMathML |
Definition at line 30759 of file libsbml.py.
| libsbml.BadMathMLNodeType = _libsbml.BadMathMLNodeType |
Definition at line 30764 of file libsbml.py.
| libsbml.BadProcessingInstruction = _libsbml.BadProcessingInstruction |
Definition at line 29460 of file libsbml.py.
| libsbml.BadXMLAttribute = _libsbml.BadXMLAttribute |
Definition at line 29468 of file libsbml.py.
| libsbml.BadXMLAttributeValue = _libsbml.BadXMLAttributeValue |
Definition at line 29467 of file libsbml.py.
| libsbml.BadXMLComment = _libsbml.BadXMLComment |
Definition at line 29470 of file libsbml.py.
| libsbml.BadXMLDecl = _libsbml.BadXMLDecl |
Definition at line 29451 of file libsbml.py.
| libsbml.BadXMLDeclLocation = _libsbml.BadXMLDeclLocation |
Definition at line 29471 of file libsbml.py.
| libsbml.BadXMLDOCTYPE = _libsbml.BadXMLDOCTYPE |
Definition at line 29452 of file libsbml.py.
| libsbml.BadXMLDocumentStructure = _libsbml.BadXMLDocumentStructure |
Definition at line 29476 of file libsbml.py.
| libsbml.BadXMLIDRef = _libsbml.BadXMLIDRef |
Definition at line 29474 of file libsbml.py.
| libsbml.BadXMLIDValue = _libsbml.BadXMLIDValue |
Definition at line 29473 of file libsbml.py.
| libsbml.BadXMLPrefix = _libsbml.BadXMLPrefix |
Definition at line 29461 of file libsbml.py.
| libsbml.BadXMLPrefixValue = _libsbml.BadXMLPrefixValue |
Definition at line 29462 of file libsbml.py.
| libsbml.BIOLOGICAL_QUALIFIER = _libsbml.BIOLOGICAL_QUALIFIER |
Definition at line 31418 of file libsbml.py.
| libsbml.BooleanOpsNeedBooleanArgs = _libsbml.BooleanOpsNeedBooleanArgs |
Definition at line 30548 of file libsbml.py.
| libsbml.BothAmountAndConcentrationSet = _libsbml.BothAmountAndConcentrationSet |
Definition at line 30653 of file libsbml.py.
| libsbml.BothStoichiometryAndMath = _libsbml.BothStoichiometryAndMath |
Definition at line 30683 of file libsbml.py.
| libsbml.BQB_ENCODES = _libsbml.BQB_ENCODES |
Definition at line 31431 of file libsbml.py.
| libsbml.BQB_HAS_PART = _libsbml.BQB_HAS_PART |
Definition at line 31424 of file libsbml.py.
| libsbml.BQB_HAS_VERSION = _libsbml.BQB_HAS_VERSION |
Definition at line 31427 of file libsbml.py.
| libsbml.BQB_IS = _libsbml.BQB_IS |
Definition at line 31423 of file libsbml.py.
| libsbml.BQB_IS_DESCRIBED_BY = _libsbml.BQB_IS_DESCRIBED_BY |
Definition at line 31429 of file libsbml.py.
| libsbml.BQB_IS_ENCODED_BY = _libsbml.BQB_IS_ENCODED_BY |
Definition at line 31430 of file libsbml.py.
| libsbml.BQB_IS_HOMOLOG_TO = _libsbml.BQB_IS_HOMOLOG_TO |
Definition at line 31428 of file libsbml.py.
| libsbml.BQB_IS_PART_OF = _libsbml.BQB_IS_PART_OF |
Definition at line 31425 of file libsbml.py.
| libsbml.BQB_IS_VERSION_OF = _libsbml.BQB_IS_VERSION_OF |
Definition at line 31426 of file libsbml.py.
| libsbml.BQB_OCCURS_IN = _libsbml.BQB_OCCURS_IN |
Definition at line 31432 of file libsbml.py.
| libsbml.BQB_UNKNOWN = _libsbml.BQB_UNKNOWN |
Definition at line 31433 of file libsbml.py.
| libsbml.BQM_IS = _libsbml.BQM_IS |
Definition at line 31420 of file libsbml.py.
| libsbml.BQM_IS_DESCRIBED_BY = _libsbml.BQM_IS_DESCRIBED_BY |
Definition at line 31421 of file libsbml.py.
| libsbml.BQM_UNKNOWN = _libsbml.BQM_UNKNOWN |
Definition at line 31422 of file libsbml.py.
| libsbml.CannotConvertToL1V1 = _libsbml.CannotConvertToL1V1 |
Definition at line 30704 of file libsbml.py.
| libsbml.CelsiusNoLongerValid = _libsbml.CelsiusNoLongerValid |
Definition at line 30634 of file libsbml.py.
| libsbml.cerr = cvar.cerr |
Definition at line 991 of file libsbml.py.
| libsbml.CircularRuleDependency = _libsbml.CircularRuleDependency |
Definition at line 30669 of file libsbml.py.
| libsbml.clog = cvar.clog |
Definition at line 992 of file libsbml.py.
| libsbml.CompartmentShouldHaveSize = _libsbml.CompartmentShouldHaveSize |
Definition at line 30700 of file libsbml.py.
| libsbml.CompartmentTypeNotValidAttribute = _libsbml.CompartmentTypeNotValidAttribute |
Definition at line 30773 of file libsbml.py.
| libsbml.CompartmentTypeNotValidComponent = _libsbml.CompartmentTypeNotValidComponent |
Definition at line 30779 of file libsbml.py.
| libsbml.ConstantNotValidAttribute = _libsbml.ConstantNotValidAttribute |
Definition at line 30774 of file libsbml.py.
| libsbml.ConstantSpeciesNotValidAttribute = _libsbml.ConstantSpeciesNotValidAttribute |
Definition at line 30787 of file libsbml.py.
| libsbml.ConstraintContainsDOCTYPE = _libsbml.ConstraintContainsDOCTYPE |
Definition at line 30674 of file libsbml.py.
| libsbml.ConstraintContainsXMLDecl = _libsbml.ConstraintContainsXMLDecl |
Definition at line 30673 of file libsbml.py.
| libsbml.ConstraintMathNotBoolean = _libsbml.ConstraintMathNotBoolean |
Definition at line 30670 of file libsbml.py.
| libsbml.ConstraintNotInXHTMLNamespace = _libsbml.ConstraintNotInXHTMLNamespace |
Definition at line 30672 of file libsbml.py.
| libsbml.ConstraintNotValidComponent = _libsbml.ConstraintNotValidComponent |
Definition at line 30780 of file libsbml.py.
| libsbml.cout = cvar.cout |
Definition at line 990 of file libsbml.py.
| libsbml.cvar = _libsbml.cvar |
Definition at line 582 of file libsbml.py.
| libsbml.DelayUnitsNotTime = _libsbml.DelayUnitsNotTime |
Definition at line 30584 of file libsbml.py.
| libsbml.DisallowedDefinitionURLUse = _libsbml.DisallowedDefinitionURLUse |
Definition at line 30543 of file libsbml.py.
| libsbml.DisallowedMathMLEncodingUse = _libsbml.DisallowedMathMLEncodingUse |
Definition at line 30542 of file libsbml.py.
| libsbml.DisallowedMathMLSymbol = _libsbml.DisallowedMathMLSymbol |
Definition at line 30541 of file libsbml.py.
| libsbml.DisallowedMathTypeAttributeUse = _libsbml.DisallowedMathTypeAttributeUse |
Definition at line 30545 of file libsbml.py.
| libsbml.DisallowedMathTypeAttributeValue = _libsbml.DisallowedMathTypeAttributeValue |
Definition at line 30546 of file libsbml.py.
| libsbml.DuplicateAnnotationInvalidInL2v2 = _libsbml.DuplicateAnnotationInvalidInL2v2 |
Definition at line 30735 of file libsbml.py.
| libsbml.DuplicateAnnotationInvalidInL2v3 = _libsbml.DuplicateAnnotationInvalidInL2v3 |
Definition at line 30745 of file libsbml.py.
| libsbml.DuplicateAnnotationInvalidInL2v4 = _libsbml.DuplicateAnnotationInvalidInL2v4 |
Definition at line 30752 of file libsbml.py.
| libsbml.DuplicateAnnotationNamespaces = _libsbml.DuplicateAnnotationNamespaces |
Definition at line 30571 of file libsbml.py.
| libsbml.DuplicateComponentId = _libsbml.DuplicateComponentId |
Definition at line 30559 of file libsbml.py.
| libsbml.DuplicateLocalParameterId = _libsbml.DuplicateLocalParameterId |
Definition at line 30561 of file libsbml.py.
| libsbml.DuplicateMetaId = _libsbml.DuplicateMetaId |
Definition at line 30565 of file libsbml.py.
| libsbml.DuplicateUnitDefinitionId = _libsbml.DuplicateUnitDefinitionId |
Definition at line 30560 of file libsbml.py.
| libsbml.DuplicateXMLAttribute = _libsbml.DuplicateXMLAttribute |
Definition at line 29458 of file libsbml.py.
| libsbml.EmptyListElement = _libsbml.EmptyListElement |
Definition at line 30616 of file libsbml.py.
| libsbml.EmptyListInKineticLaw = _libsbml.EmptyListInKineticLaw |
Definition at line 30686 of file libsbml.py.
| libsbml.EmptyListInReaction = _libsbml.EmptyListInReaction |
Definition at line 30678 of file libsbml.py.
| libsbml.EmptyListOfUnits = _libsbml.EmptyListOfUnits |
Definition at line 30631 of file libsbml.py.
| libsbml.EventAndAssignmentRuleForId = _libsbml.EventAndAssignmentRuleForId |
Definition at line 30564 of file libsbml.py.
| libsbml.EventAssignCompartmentMismatch = _libsbml.EventAssignCompartmentMismatch |
Definition at line 30585 of file libsbml.py.
| libsbml.EventAssignmentForConstantEntity = _libsbml.EventAssignmentForConstantEntity |
Definition at line 30698 of file libsbml.py.
| libsbml.EventAssignParameterMismatch = _libsbml.EventAssignParameterMismatch |
Definition at line 30587 of file libsbml.py.
| libsbml.EventAssignSpeciesMismatch = _libsbml.EventAssignSpeciesMismatch |
Definition at line 30586 of file libsbml.py.
| libsbml.EventNotValidComponent = _libsbml.EventNotValidComponent |
Definition at line 30781 of file libsbml.py.
| libsbml.FailedMathMLReadOfDouble = _libsbml.FailedMathMLReadOfDouble |
Definition at line 30760 of file libsbml.py.
| libsbml.FailedMathMLReadOfExponential = _libsbml.FailedMathMLReadOfExponential |
Definition at line 30762 of file libsbml.py.
| libsbml.FailedMathMLReadOfInteger = _libsbml.FailedMathMLReadOfInteger |
Definition at line 30761 of file libsbml.py.
| libsbml.FailedMathMLReadOfRational = _libsbml.FailedMathMLReadOfRational |
Definition at line 30763 of file libsbml.py.
| libsbml.FormulaInLevel1KL = _libsbml.FormulaInLevel1KL |
Definition at line 30757 of file libsbml.py.
| libsbml.FuncDefNotValidComponent = _libsbml.FuncDefNotValidComponent |
Definition at line 30783 of file libsbml.py.
| libsbml.FunctionDefMathNotLambda = _libsbml.FunctionDefMathNotLambda |
Definition at line 30618 of file libsbml.py.
| libsbml.GeneralWarningNotSpecified = _libsbml.GeneralWarningNotSpecified |
Definition at line 30699 of file libsbml.py.
| libsbml.HasOnlySubsNoSpatialUnits = _libsbml.HasOnlySubsNoSpatialUnits |
Definition at line 30646 of file libsbml.py.
| libsbml.HasOnlySubsUnitsNotValidAttribute = _libsbml.HasOnlySubsUnitsNotValidAttribute |
Definition at line 30790 of file libsbml.py.
| libsbml.IdCheckOFF = _libsbml.IdCheckOFF |
Definition at line 6059 of file libsbml.py.
| libsbml.IdCheckON = _libsbml.IdCheckON |
Definition at line 6058 of file libsbml.py.
| libsbml.IdNotValidAttribute = _libsbml.IdNotValidAttribute |
Definition at line 30791 of file libsbml.py.
| libsbml.InconsistentArgUnits = _libsbml.InconsistentArgUnits |
Definition at line 30573 of file libsbml.py.
| libsbml.InconsistentArgUnitsWarnings = _libsbml.InconsistentArgUnitsWarnings |
Definition at line 30766 of file libsbml.py.
| libsbml.InconsistentExponUnitsWarnings = _libsbml.InconsistentExponUnitsWarnings |
Definition at line 30768 of file libsbml.py.
| libsbml.InconsistentPowerUnitsWarnings = _libsbml.InconsistentPowerUnitsWarnings |
Definition at line 30767 of file libsbml.py.
| libsbml.IncorrectCompartmentSpatialDimensions = _libsbml.IncorrectCompartmentSpatialDimensions |
Definition at line 30772 of file libsbml.py.
| libsbml.IncorrectOrderInConstraint = _libsbml.IncorrectOrderInConstraint |
Definition at line 30671 of file libsbml.py.
| libsbml.IncorrectOrderInEvent = _libsbml.IncorrectOrderInEvent |
Definition at line 30695 of file libsbml.py.
| libsbml.IncorrectOrderInKineticLaw = _libsbml.IncorrectOrderInKineticLaw |
Definition at line 30685 of file libsbml.py.
| libsbml.IncorrectOrderInModel = _libsbml.IncorrectOrderInModel |
Definition at line 30615 of file libsbml.py.
| libsbml.IncorrectOrderInReaction = _libsbml.IncorrectOrderInReaction |
Definition at line 30677 of file libsbml.py.
| libsbml.InitAssignCompartmenMismatch = _libsbml.InitAssignCompartmenMismatch |
Definition at line 30577 of file libsbml.py.
| libsbml.InitAssignmentAndRuleForSameId = _libsbml.InitAssignmentAndRuleForSameId |
Definition at line 30663 of file libsbml.py.
| libsbml.InitAssignParameterMismatch = _libsbml.InitAssignParameterMismatch |
Definition at line 30579 of file libsbml.py.
| libsbml.InitAssignSpeciesMismatch = _libsbml.InitAssignSpeciesMismatch |
Definition at line 30578 of file libsbml.py.
| libsbml.InitialAssignNotValidComponent = _libsbml.InitialAssignNotValidComponent |
Definition at line 30784 of file libsbml.py.
| libsbml.InternalXMLParserError = _libsbml.InternalXMLParserError |
Definition at line 29446 of file libsbml.py.
| libsbml.Invalid1DCompartmentUnits = _libsbml.Invalid1DCompartmentUnits |
Definition at line 30641 of file libsbml.py.
| libsbml.Invalid2DCompartmentUnits = _libsbml.Invalid2DCompartmentUnits |
Definition at line 30642 of file libsbml.py.
| libsbml.Invalid3DCompartmentUnits = _libsbml.Invalid3DCompartmentUnits |
Definition at line 30643 of file libsbml.py.
| libsbml.InvalidAfterXMLContent = _libsbml.InvalidAfterXMLContent |
Definition at line 29477 of file libsbml.py.
| libsbml.InvalidApplyCiInLambda = _libsbml.InvalidApplyCiInLambda |
Definition at line 30619 of file libsbml.py.
| libsbml.InvalidAreaRedefinition = _libsbml.InvalidAreaRedefinition |
Definition at line 30626 of file libsbml.py.
| libsbml.InvalidAssignRuleVariable = _libsbml.InvalidAssignRuleVariable |
Definition at line 30664 of file libsbml.py.
| libsbml.InvalidCharInXML = _libsbml.InvalidCharInXML |
Definition at line 29453 of file libsbml.py.
| libsbml.InvalidCiInLambda = _libsbml.InvalidCiInLambda |
Definition at line 30621 of file libsbml.py.
| libsbml.InvalidCompartmentSBOTerm = _libsbml.InvalidCompartmentSBOTerm |
Definition at line 30600 of file libsbml.py.
| libsbml.InvalidCompartmentTypeRef = _libsbml.InvalidCompartmentTypeRef |
Definition at line 30644 of file libsbml.py.
| libsbml.InvalidCompartmentTypeSBOTerm = _libsbml.InvalidCompartmentTypeSBOTerm |
Definition at line 30602 of file libsbml.py.
| libsbml.InvalidConstraintContent = _libsbml.InvalidConstraintContent |
Definition at line 30675 of file libsbml.py.
| libsbml.InvalidConstraintSBOTerm = _libsbml.InvalidConstraintSBOTerm |
Definition at line 30594 of file libsbml.py.
| libsbml.InvalidDelaySBOTerm = _libsbml.InvalidDelaySBOTerm |
Definition at line 30605 of file libsbml.py.
| libsbml.InvalidEventAssignmentSBOTerm = _libsbml.InvalidEventAssignmentSBOTerm |
Definition at line 30599 of file libsbml.py.
| libsbml.InvalidEventAssignmentVariable = _libsbml.InvalidEventAssignmentVariable |
Definition at line 30697 of file libsbml.py.
| libsbml.InvalidEventSBOTerm = _libsbml.InvalidEventSBOTerm |
Definition at line 30598 of file libsbml.py.
| libsbml.InvalidFunctionDefReturnType = _libsbml.InvalidFunctionDefReturnType |
Definition at line 30622 of file libsbml.py.
| libsbml.InvalidFunctionDefSBOTerm = _libsbml.InvalidFunctionDefSBOTerm |
Definition at line 30590 of file libsbml.py.
| libsbml.InvalidIdSyntax = _libsbml.InvalidIdSyntax |
Definition at line 30568 of file libsbml.py.
| libsbml.InvalidInitAssignSBOTerm = _libsbml.InvalidInitAssignSBOTerm |
Definition at line 30592 of file libsbml.py.
| libsbml.InvalidInitAssignSymbol = _libsbml.InvalidInitAssignSymbol |
Definition at line 30661 of file libsbml.py.
| libsbml.InvalidKineticLawSBOTerm = _libsbml.InvalidKineticLawSBOTerm |
Definition at line 30597 of file libsbml.py.
| libsbml.InvalidL1CompartmentUnits = _libsbml.InvalidL1CompartmentUnits |
Definition at line 30777 of file libsbml.py.
| libsbml.InvalidLengthRedefinition = _libsbml.InvalidLengthRedefinition |
Definition at line 30625 of file libsbml.py.
| libsbml.InvalidMathElement = _libsbml.InvalidMathElement |
Definition at line 30540 of file libsbml.py.
| libsbml.InvalidMetaidSyntax = _libsbml.InvalidMetaidSyntax |
Definition at line 30567 of file libsbml.py.
| libsbml.InvalidModelSBOTerm = _libsbml.InvalidModelSBOTerm |
Definition at line 30589 of file libsbml.py.
| libsbml.InvalidModifiersList = _libsbml.InvalidModifiersList |
Definition at line 30680 of file libsbml.py.
| libsbml.InvalidNamespaceOnSBML = _libsbml.InvalidNamespaceOnSBML |
Definition at line 30610 of file libsbml.py.
| libsbml.InvalidNoArgsPassedToFunctionDef = _libsbml.InvalidNoArgsPassedToFunctionDef |
Definition at line 30558 of file libsbml.py.
| libsbml.InvalidNotesContent = _libsbml.InvalidNotesContent |
Definition at line 30609 of file libsbml.py.
| libsbml.InvalidParameterSBOTerm = _libsbml.InvalidParameterSBOTerm |
Definition at line 30591 of file libsbml.py.
| libsbml.InvalidParameterUnits = _libsbml.InvalidParameterUnits |
Definition at line 30660 of file libsbml.py.
| libsbml.InvalidRateRuleVariable = _libsbml.InvalidRateRuleVariable |
Definition at line 30665 of file libsbml.py.
| libsbml.InvalidReactantsProductsList = _libsbml.InvalidReactantsProductsList |
Definition at line 30679 of file libsbml.py.
| libsbml.InvalidReactionSBOTerm = _libsbml.InvalidReactionSBOTerm |
Definition at line 30595 of file libsbml.py.
| libsbml.InvalidRuleOrdering = _libsbml.InvalidRuleOrdering |
Definition at line 30754 of file libsbml.py.
| libsbml.InvalidRuleSBOTerm = _libsbml.InvalidRuleSBOTerm |
Definition at line 30593 of file libsbml.py.
| libsbml.InvalidSBMLLevelVersion = _libsbml.InvalidSBMLLevelVersion |
Definition at line 30753 of file libsbml.py.
| libsbml.InvalidSBOTermSyntax = _libsbml.InvalidSBOTermSyntax |
Definition at line 30566 of file libsbml.py.
| libsbml.InvalidSpeciesCompartmentRef = _libsbml.InvalidSpeciesCompartmentRef |
Definition at line 30645 of file libsbml.py.
| libsbml.InvalidSpeciesReference = _libsbml.InvalidSpeciesReference |
Definition at line 30681 of file libsbml.py.
| libsbml.InvalidSpeciesReferenceSBOTerm = _libsbml.InvalidSpeciesReferenceSBOTerm |
Definition at line 30596 of file libsbml.py.
| libsbml.InvalidSpeciesSBOTerm = _libsbml.InvalidSpeciesSBOTerm |
Definition at line 30601 of file libsbml.py.
| libsbml.InvalidSpeciesSusbstanceUnits = _libsbml.InvalidSpeciesSusbstanceUnits |
Definition at line 30652 of file libsbml.py.
| libsbml.InvalidSpeciesTypeRef = _libsbml.InvalidSpeciesTypeRef |
Definition at line 30656 of file libsbml.py.
| libsbml.InvalidSpeciesTypeSBOTerm = _libsbml.InvalidSpeciesTypeSBOTerm |
Definition at line 30603 of file libsbml.py.
| libsbml.InvalidSubstanceRedefinition = _libsbml.InvalidSubstanceRedefinition |
Definition at line 30624 of file libsbml.py.
| libsbml.InvalidTimeRedefinition = _libsbml.InvalidTimeRedefinition |
Definition at line 30627 of file libsbml.py.
| libsbml.InvalidTriggerSBOTerm = _libsbml.InvalidTriggerSBOTerm |
Definition at line 30604 of file libsbml.py.
| libsbml.InvalidUnitDefId = _libsbml.InvalidUnitDefId |
Definition at line 30623 of file libsbml.py.
| libsbml.InvalidUnitIdSyntax = _libsbml.InvalidUnitIdSyntax |
Definition at line 30569 of file libsbml.py.
| libsbml.InvalidUnitKind = _libsbml.InvalidUnitKind |
Definition at line 30632 of file libsbml.py.
| libsbml.InvalidVolumeRedefinition = _libsbml.InvalidVolumeRedefinition |
Definition at line 30628 of file libsbml.py.
| libsbml.InvalidXMLConstruct = _libsbml.InvalidXMLConstruct |
Definition at line 29456 of file libsbml.py.
| libsbml.KineticLawNotSubstancePerTime = _libsbml.KineticLawNotSubstancePerTime |
Definition at line 30583 of file libsbml.py.
| libsbml.KineticLawParametersAreLocalOnly = _libsbml.KineticLawParametersAreLocalOnly |
Definition at line 30555 of file libsbml.py.
| libsbml.L1V1CompartmentVolumeReqd = _libsbml.L1V1CompartmentVolumeReqd |
Definition at line 30778 of file libsbml.py.
| libsbml.LambdaOnlyAllowedInFunctionDef = _libsbml.LambdaOnlyAllowedInFunctionDef |
Definition at line 30547 of file libsbml.py.
| libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY = _libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY |
Definition at line 30802 of file libsbml.py.
| libsbml.LIBSBML_CAT_IDENTIFIER_CONSISTENCY = _libsbml.LIBSBML_CAT_IDENTIFIER_CONSISTENCY |
Definition at line 30803 of file libsbml.py.
| libsbml.LIBSBML_CAT_INTERNAL = _libsbml.LIBSBML_CAT_INTERNAL |
Definition at line 29485 of file libsbml.py.
| libsbml.LIBSBML_CAT_INTERNAL_CONSISTENCY = _libsbml.LIBSBML_CAT_INTERNAL_CONSISTENCY |
Definition at line 30810 of file libsbml.py.
| libsbml.LIBSBML_CAT_MATHML_CONSISTENCY = _libsbml.LIBSBML_CAT_MATHML_CONSISTENCY |
Definition at line 30805 of file libsbml.py.
| libsbml.LIBSBML_CAT_MODELING_PRACTICE = _libsbml.LIBSBML_CAT_MODELING_PRACTICE |
Definition at line 30809 of file libsbml.py.
| libsbml.LIBSBML_CAT_OVERDETERMINED_MODEL = _libsbml.LIBSBML_CAT_OVERDETERMINED_MODEL |
Definition at line 30807 of file libsbml.py.
| libsbml.LIBSBML_CAT_SBML = _libsbml.LIBSBML_CAT_SBML |
Definition at line 30798 of file libsbml.py.
| libsbml.LIBSBML_CAT_SBML_L1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L1_COMPAT |
Definition at line 30799 of file libsbml.py.
| libsbml.LIBSBML_CAT_SBML_L2V1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V1_COMPAT |
Definition at line 30800 of file libsbml.py.
| libsbml.LIBSBML_CAT_SBML_L2V2_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V2_COMPAT |
Definition at line 30801 of file libsbml.py.
| libsbml.LIBSBML_CAT_SBML_L2V3_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V3_COMPAT |
Definition at line 30808 of file libsbml.py.
| libsbml.LIBSBML_CAT_SBML_L2V4_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V4_COMPAT |
Definition at line 30811 of file libsbml.py.
| libsbml.LIBSBML_CAT_SBO_CONSISTENCY = _libsbml.LIBSBML_CAT_SBO_CONSISTENCY |
Definition at line 30806 of file libsbml.py.
| libsbml.LIBSBML_CAT_SYSTEM = _libsbml.LIBSBML_CAT_SYSTEM |
Definition at line 29486 of file libsbml.py.
| libsbml.LIBSBML_CAT_UNITS_CONSISTENCY = _libsbml.LIBSBML_CAT_UNITS_CONSISTENCY |
Definition at line 30804 of file libsbml.py.
| libsbml.LIBSBML_CAT_XML = _libsbml.LIBSBML_CAT_XML |
Definition at line 29487 of file libsbml.py.
| libsbml.LIBSBML_DOTTED_VERSION = _libsbml.LIBSBML_DOTTED_VERSION |
Definition at line 688 of file libsbml.py.
| libsbml.LIBSBML_DUPLICATE_OBJECT_ID = _libsbml.LIBSBML_DUPLICATE_OBJECT_ID |
Definition at line 743 of file libsbml.py.
| libsbml.LIBSBML_INDEX_EXCEEDS_SIZE = _libsbml.LIBSBML_INDEX_EXCEEDS_SIZE |
Definition at line 738 of file libsbml.py.
| libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE = _libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE |
Definition at line 741 of file libsbml.py.
| libsbml.LIBSBML_INVALID_OBJECT = _libsbml.LIBSBML_INVALID_OBJECT |
Definition at line 742 of file libsbml.py.
| libsbml.LIBSBML_INVALID_XML_OPERATION = _libsbml.LIBSBML_INVALID_XML_OPERATION |
Definition at line 746 of file libsbml.py.
| libsbml.LIBSBML_LEVEL_MISMATCH = _libsbml.LIBSBML_LEVEL_MISMATCH |
Definition at line 744 of file libsbml.py.
| libsbml.LIBSBML_OPERATION_FAILED = _libsbml.LIBSBML_OPERATION_FAILED |
Definition at line 740 of file libsbml.py.
| libsbml.LIBSBML_OPERATION_RETURN_VALUES_H = _libsbml.LIBSBML_OPERATION_RETURN_VALUES_H |
Definition at line 736 of file libsbml.py.
| libsbml.LIBSBML_OPERATION_SUCCESS = _libsbml.LIBSBML_OPERATION_SUCCESS |
Definition at line 737 of file libsbml.py.
| libsbml.LIBSBML_SEV_ERROR = _libsbml.LIBSBML_SEV_ERROR |
Definition at line 29490 of file libsbml.py.
| libsbml.LIBSBML_SEV_FATAL = _libsbml.LIBSBML_SEV_FATAL |
Definition at line 29491 of file libsbml.py.
| libsbml.LIBSBML_SEV_GENERAL_WARNING = _libsbml.LIBSBML_SEV_GENERAL_WARNING |
Definition at line 30813 of file libsbml.py.
| libsbml.LIBSBML_SEV_INFO = _libsbml.LIBSBML_SEV_INFO |
Definition at line 29488 of file libsbml.py.
| libsbml.LIBSBML_SEV_NOT_APPLICABLE = _libsbml.LIBSBML_SEV_NOT_APPLICABLE |
Definition at line 30814 of file libsbml.py.
| libsbml.LIBSBML_SEV_SCHEMA_ERROR = _libsbml.LIBSBML_SEV_SCHEMA_ERROR |
Definition at line 30812 of file libsbml.py.
| libsbml.LIBSBML_SEV_WARNING = _libsbml.LIBSBML_SEV_WARNING |
Definition at line 29489 of file libsbml.py.
| libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE = _libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE |
Definition at line 739 of file libsbml.py.
| libsbml.LIBSBML_VERSION = _libsbml.LIBSBML_VERSION |
Definition at line 689 of file libsbml.py.
| libsbml.LIBSBML_VERSION_MISMATCH = _libsbml.LIBSBML_VERSION_MISMATCH |
Definition at line 745 of file libsbml.py.
| libsbml.LIBSBML_VERSION_STRING = _libsbml.LIBSBML_VERSION_STRING |
Definition at line 690 of file libsbml.py.
| libsbml.LibSBMLAdditionalCodesLowerBound = _libsbml.LibSBMLAdditionalCodesLowerBound |
Definition at line 30703 of file libsbml.py.
| libsbml.LocalParameterShadowsId = _libsbml.LocalParameterShadowsId |
Definition at line 30702 of file libsbml.py.
| libsbml.MathCheckOFF = _libsbml.MathCheckOFF |
Definition at line 6065 of file libsbml.py.
| libsbml.MathCheckON = _libsbml.MathCheckON |
Definition at line 6064 of file libsbml.py.
| libsbml.MathResultMustBeNumeric = _libsbml.MathResultMustBeNumeric |
Definition at line 30556 of file libsbml.py.
| libsbml.MetaIdNotValidAttribute = _libsbml.MetaIdNotValidAttribute |
Definition at line 30775 of file libsbml.py.
| libsbml.MissingAnnotationNamespace = _libsbml.MissingAnnotationNamespace |
Definition at line 30570 of file libsbml.py.
| libsbml.MissingEventAssignment = _libsbml.MissingEventAssignment |
Definition at line 30693 of file libsbml.py.
| libsbml.MissingModel = _libsbml.MissingModel |
Definition at line 30614 of file libsbml.py.
| libsbml.MissingOrInconsistentLevel = _libsbml.MissingOrInconsistentLevel |
Definition at line 30611 of file libsbml.py.
| libsbml.MissingOrInconsistentVersion = _libsbml.MissingOrInconsistentVersion |
Definition at line 30612 of file libsbml.py.
| libsbml.MissingSpeciesCompartment = _libsbml.MissingSpeciesCompartment |
Definition at line 30658 of file libsbml.py.
| libsbml.MissingTriggerInEvent = _libsbml.MissingTriggerInEvent |
Definition at line 30691 of file libsbml.py.
| libsbml.MissingXMLAttributeValue = _libsbml.MissingXMLAttributeValue |
Definition at line 29466 of file libsbml.py.
| libsbml.MissingXMLDecl = _libsbml.MissingXMLDecl |
Definition at line 29449 of file libsbml.py.
| libsbml.MissingXMLElements = _libsbml.MissingXMLElements |
Definition at line 29482 of file libsbml.py.
| libsbml.MissingXMLEncoding = _libsbml.MissingXMLEncoding |
Definition at line 29450 of file libsbml.py.
| libsbml.MissingXMLRequiredAttribute = _libsbml.MissingXMLRequiredAttribute |
Definition at line 29463 of file libsbml.py.
| libsbml.MODEL_QUALIFIER = _libsbml.MODEL_QUALIFIER |
Definition at line 31417 of file libsbml.py.
| libsbml.ModelSBOBranchChangedBeyondL2v2 = _libsbml.ModelSBOBranchChangedBeyondL2v2 |
Definition at line 30732 of file libsbml.py.
| libsbml.ModelSBOBranchChangedBeyondL2v3 = _libsbml.ModelSBOBranchChangedBeyondL2v3 |
Definition at line 30742 of file libsbml.py.
| libsbml.ModelSBOBranchChangedInL2v4 = _libsbml.ModelSBOBranchChangedInL2v4 |
Definition at line 30751 of file libsbml.py.
| libsbml.MultipleAssignmentOrRateRules = _libsbml.MultipleAssignmentOrRateRules |
Definition at line 30562 of file libsbml.py.
| libsbml.MultipleEventAssignmentsForId = _libsbml.MultipleEventAssignmentsForId |
Definition at line 30563 of file libsbml.py.
| libsbml.MultipleInitAssignments = _libsbml.MultipleInitAssignments |
Definition at line 30662 of file libsbml.py.
| libsbml.MultiplierNotValidAttribute = _libsbml.MultiplierNotValidAttribute |
Definition at line 30795 of file libsbml.py.
| libsbml.MultSpeciesSameTypeInCompartment = _libsbml.MultSpeciesSameTypeInCompartment |
Definition at line 30657 of file libsbml.py.
| libsbml.NameNotValidAttribute = _libsbml.NameNotValidAttribute |
Definition at line 30792 of file libsbml.py.
| libsbml.NeedCompartmentIfHaveSpecies = _libsbml.NeedCompartmentIfHaveSpecies |
Definition at line 30617 of file libsbml.py.
| libsbml.NoCompartmentTypeInL1 = _libsbml.NoCompartmentTypeInL1 |
Definition at line 30710 of file libsbml.py.
| libsbml.NoCompartmentTypeInL2v1 = _libsbml.NoCompartmentTypeInL2v1 |
Definition at line 30722 of file libsbml.py.
| libsbml.NoConcentrationInZeroD = _libsbml.NoConcentrationInZeroD |
Definition at line 30648 of file libsbml.py.
| libsbml.NoConstraintsInL1 = _libsbml.NoConstraintsInL1 |
Definition at line 30707 of file libsbml.py.
| libsbml.NoConstraintsInL2v1 = _libsbml.NoConstraintsInL2v1 |
Definition at line 30719 of file libsbml.py.
| libsbml.NoDelayedEventAssignmentInL2v1 = _libsbml.NoDelayedEventAssignmentInL2v1 |
Definition at line 30725 of file libsbml.py.
| libsbml.NoDelayedEventAssignmentInL2v2 = _libsbml.NoDelayedEventAssignmentInL2v2 |
Definition at line 30731 of file libsbml.py.
| libsbml.NoDelayedEventAssignmentInL2v3 = _libsbml.NoDelayedEventAssignmentInL2v3 |
Definition at line 30741 of file libsbml.py.
| libsbml.NoEventsInL1 = _libsbml.NoEventsInL1 |
Definition at line 30705 of file libsbml.py.
| libsbml.NoEventTimeUnitsInL2v3 = _libsbml.NoEventTimeUnitsInL2v3 |
Definition at line 30740 of file libsbml.py.
| libsbml.NoEventTimeUnitsInL2v4 = _libsbml.NoEventTimeUnitsInL2v4 |
Definition at line 30750 of file libsbml.py.
| libsbml.NoFancyStoichiometryMathInL1 = _libsbml.NoFancyStoichiometryMathInL1 |
Definition at line 30712 of file libsbml.py.
| libsbml.NoFunctionDefinitionsInL1 = _libsbml.NoFunctionDefinitionsInL1 |
Definition at line 30706 of file libsbml.py.
| libsbml.NoIdOnSpeciesReferenceInL2v1 = _libsbml.NoIdOnSpeciesReferenceInL2v1 |
Definition at line 30724 of file libsbml.py.
| libsbml.NoInitialAssignmentsInL1 = _libsbml.NoInitialAssignmentsInL1 |
Definition at line 30708 of file libsbml.py.
| libsbml.NoInitialAssignmentsInL2v1 = _libsbml.NoInitialAssignmentsInL2v1 |
Definition at line 30720 of file libsbml.py.
| libsbml.NoKineticLawSubstanceUnitsInL2v2 = _libsbml.NoKineticLawSubstanceUnitsInL2v2 |
Definition at line 30730 of file libsbml.py.
| libsbml.NoKineticLawSubstanceUnitsInL2v3 = _libsbml.NoKineticLawSubstanceUnitsInL2v3 |
Definition at line 30738 of file libsbml.py.
| libsbml.NoKineticLawSubstanceUnitsInL2v4 = _libsbml.NoKineticLawSubstanceUnitsInL2v4 |
Definition at line 30748 of file libsbml.py.
| libsbml.NoKineticLawTimeUnitsInL2v2 = _libsbml.NoKineticLawTimeUnitsInL2v2 |
Definition at line 30729 of file libsbml.py.
| libsbml.NoKineticLawTimeUnitsInL2v3 = _libsbml.NoKineticLawTimeUnitsInL2v3 |
Definition at line 30737 of file libsbml.py.
| libsbml.NoKineticLawTimeUnitsInL2v4 = _libsbml.NoKineticLawTimeUnitsInL2v4 |
Definition at line 30747 of file libsbml.py.
| libsbml.NonBoundarySpeciesAssignedAndUsed = _libsbml.NonBoundarySpeciesAssignedAndUsed |
Definition at line 30654 of file libsbml.py.
| libsbml.NonConstantLocalParameter = _libsbml.NonConstantLocalParameter |
Definition at line 30687 of file libsbml.py.
| libsbml.NonConstantSpeciesUsed = _libsbml.NonConstantSpeciesUsed |
Definition at line 30655 of file libsbml.py.
| libsbml.NoNon3DComparmentsInL1 = _libsbml.NoNon3DComparmentsInL1 |
Definition at line 30711 of file libsbml.py.
| libsbml.NoNonIntegerStoichiometryInL1 = _libsbml.NoNonIntegerStoichiometryInL1 |
Definition at line 30713 of file libsbml.py.
| libsbml.NoReactantsOrProducts = _libsbml.NoReactantsOrProducts |
Definition at line 30676 of file libsbml.py.
| libsbml.NoSBOTermsInL1 = _libsbml.NoSBOTermsInL1 |
Definition at line 30717 of file libsbml.py.
| libsbml.NoSBOTermsInL2v1 = _libsbml.NoSBOTermsInL2v1 |
Definition at line 30723 of file libsbml.py.
| libsbml.NoSpatialUnitsInZeroD = _libsbml.NoSpatialUnitsInZeroD |
Definition at line 30647 of file libsbml.py.
| libsbml.NoSpeciesSpatialSizeUnitsInL1 = _libsbml.NoSpeciesSpatialSizeUnitsInL1 |
Definition at line 30716 of file libsbml.py.
| libsbml.NoSpeciesSpatialSizeUnitsInL2v3 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v3 |
Definition at line 30739 of file libsbml.py.
| libsbml.NoSpeciesSpatialSizeUnitsInL2v4 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v4 |
Definition at line 30749 of file libsbml.py.
| libsbml.NoSpeciesTypeInL2v1 = _libsbml.NoSpeciesTypeInL2v1 |
Definition at line 30721 of file libsbml.py.
| libsbml.NoSpeciesTypesInL1 = _libsbml.NoSpeciesTypesInL1 |
Definition at line 30709 of file libsbml.py.
| libsbml.NotesContainsDOCTYPE = _libsbml.NotesContainsDOCTYPE |
Definition at line 30608 of file libsbml.py.
| libsbml.NotesContainsXMLDecl = _libsbml.NotesContainsXMLDecl |
Definition at line 30607 of file libsbml.py.
| libsbml.NotesNotInXHTMLNamespace = _libsbml.NotesNotInXHTMLNamespace |
Definition at line 30606 of file libsbml.py.
| libsbml.NoTimeSymbolInFunctionDef = _libsbml.NoTimeSymbolInFunctionDef |
Definition at line 30765 of file libsbml.py.
| libsbml.NotSchemaConformant = _libsbml.NotSchemaConformant |
Definition at line 30539 of file libsbml.py.
| libsbml.NotUTF8 = _libsbml.NotUTF8 |
Definition at line 30537 of file libsbml.py.
| libsbml.NoUnitMultipliersOrOffsetsInL1 = _libsbml.NoUnitMultipliersOrOffsetsInL1 |
Definition at line 30714 of file libsbml.py.
| libsbml.NoUnitOffsetInL2v2 = _libsbml.NoUnitOffsetInL2v2 |
Definition at line 30728 of file libsbml.py.
| libsbml.NoUnitOffsetInL2v3 = _libsbml.NoUnitOffsetInL2v3 |
Definition at line 30736 of file libsbml.py.
| libsbml.NoUnitOffsetInL2v4 = _libsbml.NoUnitOffsetInL2v4 |
Definition at line 30746 of file libsbml.py.
| libsbml.NumericOpsNeedNumericArgs = _libsbml.NumericOpsNeedNumericArgs |
Definition at line 30549 of file libsbml.py.
| libsbml.ObseleteSBOTerm = _libsbml.ObseleteSBOTerm |
Definition at line 30771 of file libsbml.py.
| libsbml.OffsetNoLongerValid = _libsbml.OffsetNoLongerValid |
Definition at line 30633 of file libsbml.py.
| libsbml.OffsetNotValidAttribute = _libsbml.OffsetNotValidAttribute |
Definition at line 30796 of file libsbml.py.
| libsbml.OpsNeedCorrectNumberOfArgs = _libsbml.OpsNeedCorrectNumberOfArgs |
Definition at line 30557 of file libsbml.py.
| libsbml.OverdeterCheckOFF = _libsbml.OverdeterCheckOFF |
Definition at line 6069 of file libsbml.py.
| libsbml.OverdeterCheckON = _libsbml.OverdeterCheckON |
Definition at line 6068 of file libsbml.py.
| libsbml.OverdeterminedSystem = _libsbml.OverdeterminedSystem |
Definition at line 30588 of file libsbml.py.
| libsbml.ParameterShouldHaveUnits = _libsbml.ParameterShouldHaveUnits |
Definition at line 30701 of file libsbml.py.
| libsbml.PieceNeedsBoolean = _libsbml.PieceNeedsBoolean |
Definition at line 30552 of file libsbml.py.
| libsbml.PiecewiseNeedsConsistentTypes = _libsbml.PiecewiseNeedsConsistentTypes |
Definition at line 30551 of file libsbml.py.
| libsbml.PracticeCheckOFF = _libsbml.PracticeCheckOFF |
Definition at line 6071 of file libsbml.py.
| libsbml.PracticeCheckON = _libsbml.PracticeCheckON |
Definition at line 6070 of file libsbml.py.
| libsbml.RateRuleCompartmentMismatch = _libsbml.RateRuleCompartmentMismatch |
Definition at line 30580 of file libsbml.py.
| libsbml.RateRuleForConstantEntity = _libsbml.RateRuleForConstantEntity |
Definition at line 30667 of file libsbml.py.
| libsbml.RateRuleParameterMismatch = _libsbml.RateRuleParameterMismatch |
Definition at line 30582 of file libsbml.py.
| libsbml.RateRuleSpeciesMismatch = _libsbml.RateRuleSpeciesMismatch |
Definition at line 30581 of file libsbml.py.
| libsbml.RecursiveCompartmentContainment = _libsbml.RecursiveCompartmentContainment |
Definition at line 30639 of file libsbml.py.
| libsbml.RecursiveFunctionDefinition = _libsbml.RecursiveFunctionDefinition |
Definition at line 30620 of file libsbml.py.
| libsbml.RepeatedRule10304 = _libsbml.RepeatedRule10304 |
Definition at line 30668 of file libsbml.py.
| libsbml.RepeatedRule20611 = _libsbml.RepeatedRule20611 |
Definition at line 30682 of file libsbml.py.
| libsbml.RULE_TYPE_INVALID = _libsbml.RULE_TYPE_INVALID |
Definition at line 16210 of file libsbml.py.
| libsbml.RULE_TYPE_RATE = _libsbml.RULE_TYPE_RATE |
Definition at line 16208 of file libsbml.py.
| libsbml.RULE_TYPE_SCALAR = _libsbml.RULE_TYPE_SCALAR |
Definition at line 16209 of file libsbml.py.
| libsbml.SBML_ALGEBRAIC_RULE = _libsbml.SBML_ALGEBRAIC_RULE |
Definition at line 1390 of file libsbml.py.
| libsbml.SBML_ASSIGNMENT_RULE = _libsbml.SBML_ASSIGNMENT_RULE |
Definition at line 1391 of file libsbml.py.
| libsbml.SBML_COMPARTMENT = _libsbml.SBML_COMPARTMENT |
Definition at line 1370 of file libsbml.py.
| libsbml.SBML_COMPARTMENT_TYPE = _libsbml.SBML_COMPARTMENT_TYPE |
Definition at line 1371 of file libsbml.py.
| libsbml.SBML_COMPARTMENT_VOLUME_RULE = _libsbml.SBML_COMPARTMENT_VOLUME_RULE |
Definition at line 1394 of file libsbml.py.
| libsbml.SBML_CONSTRAINT = _libsbml.SBML_CONSTRAINT |
Definition at line 1372 of file libsbml.py.
| libsbml.SBML_DEFAULT_LEVEL = _libsbml.SBML_DEFAULT_LEVEL |
Definition at line 25166 of file libsbml.py.
| libsbml.SBML_DEFAULT_VERSION = _libsbml.SBML_DEFAULT_VERSION |
Definition at line 25167 of file libsbml.py.
| libsbml.SBML_DELAY = _libsbml.SBML_DELAY |
Definition at line 1397 of file libsbml.py.
| libsbml.SBML_DOCUMENT = _libsbml.SBML_DOCUMENT |
Definition at line 1373 of file libsbml.py.
| libsbml.SBML_EVENT = _libsbml.SBML_EVENT |
Definition at line 1374 of file libsbml.py.
| libsbml.SBML_EVENT_ASSIGNMENT = _libsbml.SBML_EVENT_ASSIGNMENT |
Definition at line 1375 of file libsbml.py.
| libsbml.SBML_FORMULA_UNITS_DATA = _libsbml.SBML_FORMULA_UNITS_DATA |
Definition at line 1399 of file libsbml.py.
| libsbml.SBML_FUNCTION_DEFINITION = _libsbml.SBML_FUNCTION_DEFINITION |
Definition at line 1376 of file libsbml.py.
| libsbml.SBML_INITIAL_ASSIGNMENT = _libsbml.SBML_INITIAL_ASSIGNMENT |
Definition at line 1377 of file libsbml.py.
| libsbml.SBML_KINETIC_LAW = _libsbml.SBML_KINETIC_LAW |
Definition at line 1378 of file libsbml.py.
| libsbml.SBML_LIST_FORMULA_UNITS_DATA = _libsbml.SBML_LIST_FORMULA_UNITS_DATA |
Definition at line 1400 of file libsbml.py.
| libsbml.SBML_LIST_OF = _libsbml.SBML_LIST_OF |
Definition at line 1379 of file libsbml.py.
| libsbml.SBML_LISTOF_COMPARTMENT_TYPES = _libsbml.SBML_LISTOF_COMPARTMENT_TYPES |
Definition at line 1402 of file libsbml.py.
| libsbml.SBML_LISTOF_COMPARTMENTS = _libsbml.SBML_LISTOF_COMPARTMENTS |
Definition at line 1401 of file libsbml.py.
| libsbml.SBML_LISTOF_CONSTRAINTS = _libsbml.SBML_LISTOF_CONSTRAINTS |
Definition at line 1403 of file libsbml.py.
| libsbml.SBML_LISTOF_EVENT_ASSIGNMENTS = _libsbml.SBML_LISTOF_EVENT_ASSIGNMENTS |
Definition at line 1405 of file libsbml.py.
| libsbml.SBML_LISTOF_EVENTS = _libsbml.SBML_LISTOF_EVENTS |
Definition at line 1404 of file libsbml.py.
| libsbml.SBML_LISTOF_FUNCTION_DEFINITIONS = _libsbml.SBML_LISTOF_FUNCTION_DEFINITIONS |
Definition at line 1406 of file libsbml.py.
| libsbml.SBML_LISTOF_INITIAL_ASSIGNMENTS = _libsbml.SBML_LISTOF_INITIAL_ASSIGNMENTS |
Definition at line 1407 of file libsbml.py.
| libsbml.SBML_LISTOF_PARAMETERS = _libsbml.SBML_LISTOF_PARAMETERS |
Definition at line 1408 of file libsbml.py.
| libsbml.SBML_LISTOF_REACTIONS = _libsbml.SBML_LISTOF_REACTIONS |
Definition at line 1409 of file libsbml.py.
| libsbml.SBML_LISTOF_RULES = _libsbml.SBML_LISTOF_RULES |
Definition at line 1410 of file libsbml.py.
| libsbml.SBML_LISTOF_SPECIES = _libsbml.SBML_LISTOF_SPECIES |
Definition at line 1411 of file libsbml.py.
| libsbml.SBML_LISTOF_SPECIES_REFERENCES = _libsbml.SBML_LISTOF_SPECIES_REFERENCES |
Definition at line 1412 of file libsbml.py.
| libsbml.SBML_LISTOF_SPECIES_TYPES = _libsbml.SBML_LISTOF_SPECIES_TYPES |
Definition at line 1413 of file libsbml.py.
| libsbml.SBML_LISTOF_UNIT_DEFINITIONS = _libsbml.SBML_LISTOF_UNIT_DEFINITIONS |
Definition at line 1414 of file libsbml.py.
| libsbml.SBML_LISTOF_UNITS = _libsbml.SBML_LISTOF_UNITS |
Definition at line 1415 of file libsbml.py.
| libsbml.SBML_MODEL = _libsbml.SBML_MODEL |
Definition at line 1380 of file libsbml.py.
| libsbml.SBML_MODIFIER_SPECIES_REFERENCE = _libsbml.SBML_MODIFIER_SPECIES_REFERENCE |
Definition at line 1387 of file libsbml.py.
| libsbml.SBML_PARAMETER = _libsbml.SBML_PARAMETER |
Definition at line 1381 of file libsbml.py.
| libsbml.SBML_PARAMETER_RULE = _libsbml.SBML_PARAMETER_RULE |
Definition at line 1395 of file libsbml.py.
| libsbml.SBML_RATE_RULE = _libsbml.SBML_RATE_RULE |
Definition at line 1392 of file libsbml.py.
| libsbml.SBML_REACTION = _libsbml.SBML_REACTION |
Definition at line 1382 of file libsbml.py.
| libsbml.SBML_RULE = _libsbml.SBML_RULE |
Definition at line 1383 of file libsbml.py.
| libsbml.SBML_SPECIES = _libsbml.SBML_SPECIES |
Definition at line 1384 of file libsbml.py.
| libsbml.SBML_SPECIES_CONCENTRATION_RULE = _libsbml.SBML_SPECIES_CONCENTRATION_RULE |
Definition at line 1393 of file libsbml.py.
| libsbml.SBML_SPECIES_REFERENCE = _libsbml.SBML_SPECIES_REFERENCE |
Definition at line 1385 of file libsbml.py.
| libsbml.SBML_SPECIES_TYPE = _libsbml.SBML_SPECIES_TYPE |
Definition at line 1386 of file libsbml.py.
| libsbml.SBML_STOICHIOMETRY_MATH = _libsbml.SBML_STOICHIOMETRY_MATH |
Definition at line 1398 of file libsbml.py.
| libsbml.SBML_TRIGGER = _libsbml.SBML_TRIGGER |
Definition at line 1396 of file libsbml.py.
| libsbml.SBML_UNIT = _libsbml.SBML_UNIT |
Definition at line 1389 of file libsbml.py.
| libsbml.SBML_UNIT_DEFINITION = _libsbml.SBML_UNIT_DEFINITION |
Definition at line 1388 of file libsbml.py.
| libsbml.SBML_UNKNOWN = _libsbml.SBML_UNKNOWN |
Definition at line 1369 of file libsbml.py.
| libsbml.SBML_XMLNS_L1 = _libsbml.SBML_XMLNS_L1 |
Definition at line 25168 of file libsbml.py.
| libsbml.SBML_XMLNS_L2V1 = _libsbml.SBML_XMLNS_L2V1 |
Definition at line 25169 of file libsbml.py.
| libsbml.SBML_XMLNS_L2V2 = _libsbml.SBML_XMLNS_L2V2 |
Definition at line 25170 of file libsbml.py.
| libsbml.SBML_XMLNS_L2V3 = _libsbml.SBML_XMLNS_L2V3 |
Definition at line 25171 of file libsbml.py.
| libsbml.SBML_XMLNS_L2V4 = _libsbml.SBML_XMLNS_L2V4 |
Definition at line 25172 of file libsbml.py.
| libsbml.SBMLCheckOFF = _libsbml.SBMLCheckOFF |
Definition at line 6061 of file libsbml.py.
| libsbml.SBMLCheckON = _libsbml.SBMLCheckON |
Definition at line 6060 of file libsbml.py.
| libsbml.SBMLCodesUpperBound = _libsbml.SBMLCodesUpperBound |
Definition at line 30797 of file libsbml.py.
| libsbml.SBMLNamespaceInAnnotation = _libsbml.SBMLNamespaceInAnnotation |
Definition at line 30572 of file libsbml.py.
| libsbml.SBOCheckOFF = _libsbml.SBOCheckOFF |
Definition at line 6063 of file libsbml.py.
| libsbml.SBOCheckON = _libsbml.SBOCheckON |
Definition at line 6062 of file libsbml.py.
| libsbml.SBOTermNotUniversalInL2v2 = _libsbml.SBOTermNotUniversalInL2v2 |
Definition at line 30727 of file libsbml.py.
| libsbml.SBOTermNotValidAttributeBeforeL2V2 = _libsbml.SBOTermNotValidAttributeBeforeL2V2 |
Definition at line 30782 of file libsbml.py.
| libsbml.SBOTermNotValidAttributeBeforeL2V3 = _libsbml.SBOTermNotValidAttributeBeforeL2V3 |
Definition at line 30776 of file libsbml.py.
| libsbml.SpatialSizeUnitsNotValidAttribute = _libsbml.SpatialSizeUnitsNotValidAttribute |
Definition at line 30788 of file libsbml.py.
| libsbml.SpatialSizeUnitsRemoved = _libsbml.SpatialSizeUnitsRemoved |
Definition at line 30659 of file libsbml.py.
| libsbml.SpatialUnitsInOneD = _libsbml.SpatialUnitsInOneD |
Definition at line 30649 of file libsbml.py.
| libsbml.SpatialUnitsInThreeD = _libsbml.SpatialUnitsInThreeD |
Definition at line 30651 of file libsbml.py.
| libsbml.SpatialUnitsInTwoD = _libsbml.SpatialUnitsInTwoD |
Definition at line 30650 of file libsbml.py.
| libsbml.SpeciesCompartmentRequiredInL1 = _libsbml.SpeciesCompartmentRequiredInL1 |
Definition at line 30715 of file libsbml.py.
| libsbml.SpeciesTypeNotValidAttribute = _libsbml.SpeciesTypeNotValidAttribute |
Definition at line 30789 of file libsbml.py.
| libsbml.SpeciesTypeNotValidComponent = _libsbml.SpeciesTypeNotValidComponent |
Definition at line 30793 of file libsbml.py.
| libsbml.StoichiometryMathNotValidComponent = _libsbml.StoichiometryMathNotValidComponent |
Definition at line 30794 of file libsbml.py.
| libsbml.StrictSBORequiredInL2v2 = _libsbml.StrictSBORequiredInL2v2 |
Definition at line 30734 of file libsbml.py.
| libsbml.StrictSBORequiredInL2v3 = _libsbml.StrictSBORequiredInL2v3 |
Definition at line 30744 of file libsbml.py.
| libsbml.StrictUnitsRequiredInL1 = _libsbml.StrictUnitsRequiredInL1 |
Definition at line 30718 of file libsbml.py.
| libsbml.StrictUnitsRequiredInL2v1 = _libsbml.StrictUnitsRequiredInL2v1 |
Definition at line 30726 of file libsbml.py.
| libsbml.StrictUnitsRequiredInL2v2 = _libsbml.StrictUnitsRequiredInL2v2 |
Definition at line 30733 of file libsbml.py.
| libsbml.StrictUnitsRequiredInL2v3 = _libsbml.StrictUnitsRequiredInL2v3 |
Definition at line 30743 of file libsbml.py.
| libsbml.SubsUnitsAllowedInKL = _libsbml.SubsUnitsAllowedInKL |
Definition at line 30755 of file libsbml.py.
| libsbml.SubsUnitsNoLongerValid = _libsbml.SubsUnitsNoLongerValid |
Definition at line 30688 of file libsbml.py.
| libsbml.TimeUnitsAllowedInKL = _libsbml.TimeUnitsAllowedInKL |
Definition at line 30756 of file libsbml.py.
| libsbml.TimeUnitsEvent = _libsbml.TimeUnitsEvent |
Definition at line 30694 of file libsbml.py.
| libsbml.TimeUnitsNoLongerValid = _libsbml.TimeUnitsNoLongerValid |
Definition at line 30689 of file libsbml.py.
| libsbml.TimeUnitsRemoved = _libsbml.TimeUnitsRemoved |
Definition at line 30758 of file libsbml.py.
| libsbml.TriggerMathNotBoolean = _libsbml.TriggerMathNotBoolean |
Definition at line 30692 of file libsbml.py.
| libsbml.UnclosedXMLToken = _libsbml.UnclosedXMLToken |
Definition at line 29455 of file libsbml.py.
| libsbml.UndeclaredSpeciesInStoichMath = _libsbml.UndeclaredSpeciesInStoichMath |
Definition at line 30690 of file libsbml.py.
| libsbml.UndeclaredSpeciesRef = _libsbml.UndeclaredSpeciesRef |
Definition at line 30684 of file libsbml.py.
| libsbml.UndeclaredUnits = _libsbml.UndeclaredUnits |
Definition at line 30769 of file libsbml.py.
| libsbml.UndefinedOutsideCompartment = _libsbml.UndefinedOutsideCompartment |
Definition at line 30638 of file libsbml.py.
| libsbml.UndefinedXMLEntity = _libsbml.UndefinedXMLEntity |
Definition at line 29459 of file libsbml.py.
| libsbml.UninterpretableXMLContent = _libsbml.UninterpretableXMLContent |
Definition at line 29475 of file libsbml.py.
| libsbml.UNIT_KIND_AMPERE = _libsbml.UNIT_KIND_AMPERE |
Definition at line 7748 of file libsbml.py.
| libsbml.UNIT_KIND_BECQUEREL = _libsbml.UNIT_KIND_BECQUEREL |
Definition at line 7749 of file libsbml.py.
| libsbml.UNIT_KIND_CANDELA = _libsbml.UNIT_KIND_CANDELA |
Definition at line 7750 of file libsbml.py.
| libsbml.UNIT_KIND_CELSIUS = _libsbml.UNIT_KIND_CELSIUS |
Definition at line 7751 of file libsbml.py.
| libsbml.UNIT_KIND_COULOMB = _libsbml.UNIT_KIND_COULOMB |
Definition at line 7752 of file libsbml.py.
| libsbml.UNIT_KIND_DIMENSIONLESS = _libsbml.UNIT_KIND_DIMENSIONLESS |
Definition at line 7753 of file libsbml.py.
| libsbml.UNIT_KIND_FARAD = _libsbml.UNIT_KIND_FARAD |
Definition at line 7754 of file libsbml.py.
| libsbml.UNIT_KIND_GRAM = _libsbml.UNIT_KIND_GRAM |
Definition at line 7755 of file libsbml.py.
| libsbml.UNIT_KIND_GRAY = _libsbml.UNIT_KIND_GRAY |
Definition at line 7756 of file libsbml.py.
| libsbml.UNIT_KIND_HENRY = _libsbml.UNIT_KIND_HENRY |
Definition at line 7757 of file libsbml.py.
| libsbml.UNIT_KIND_HERTZ = _libsbml.UNIT_KIND_HERTZ |
Definition at line 7758 of file libsbml.py.
| libsbml.UNIT_KIND_INVALID = _libsbml.UNIT_KIND_INVALID |
Definition at line 7783 of file libsbml.py.
| libsbml.UNIT_KIND_ITEM = _libsbml.UNIT_KIND_ITEM |
Definition at line 7759 of file libsbml.py.
| libsbml.UNIT_KIND_JOULE = _libsbml.UNIT_KIND_JOULE |
Definition at line 7760 of file libsbml.py.
| libsbml.UNIT_KIND_KATAL = _libsbml.UNIT_KIND_KATAL |
Definition at line 7761 of file libsbml.py.
| libsbml.UNIT_KIND_KELVIN = _libsbml.UNIT_KIND_KELVIN |
Definition at line 7762 of file libsbml.py.
| libsbml.UNIT_KIND_KILOGRAM = _libsbml.UNIT_KIND_KILOGRAM |
Definition at line 7763 of file libsbml.py.
| libsbml.UNIT_KIND_LITER = _libsbml.UNIT_KIND_LITER |
Definition at line 7764 of file libsbml.py.
| libsbml.UNIT_KIND_LITRE = _libsbml.UNIT_KIND_LITRE |
Definition at line 7765 of file libsbml.py.
| libsbml.UNIT_KIND_LUMEN = _libsbml.UNIT_KIND_LUMEN |
Definition at line 7766 of file libsbml.py.
| libsbml.UNIT_KIND_LUX = _libsbml.UNIT_KIND_LUX |
Definition at line 7767 of file libsbml.py.
| libsbml.UNIT_KIND_METER = _libsbml.UNIT_KIND_METER |
Definition at line 7768 of file libsbml.py.
| libsbml.UNIT_KIND_METRE = _libsbml.UNIT_KIND_METRE |
Definition at line 7769 of file libsbml.py.
| libsbml.UNIT_KIND_MOLE = _libsbml.UNIT_KIND_MOLE |
Definition at line 7770 of file libsbml.py.
| libsbml.UNIT_KIND_NEWTON = _libsbml.UNIT_KIND_NEWTON |
Definition at line 7771 of file libsbml.py.
| libsbml.UNIT_KIND_OHM = _libsbml.UNIT_KIND_OHM |
Definition at line 7772 of file libsbml.py.
| libsbml.UNIT_KIND_PASCAL = _libsbml.UNIT_KIND_PASCAL |
Definition at line 7773 of file libsbml.py.
| libsbml.UNIT_KIND_RADIAN = _libsbml.UNIT_KIND_RADIAN |
Definition at line 7774 of file libsbml.py.
| libsbml.UNIT_KIND_SECOND = _libsbml.UNIT_KIND_SECOND |
Definition at line 7775 of file libsbml.py.
| libsbml.UNIT_KIND_SIEMENS = _libsbml.UNIT_KIND_SIEMENS |
Definition at line 7776 of file libsbml.py.
| libsbml.UNIT_KIND_SIEVERT = _libsbml.UNIT_KIND_SIEVERT |
Definition at line 7777 of file libsbml.py.
| libsbml.UNIT_KIND_STERADIAN = _libsbml.UNIT_KIND_STERADIAN |
Definition at line 7778 of file libsbml.py.
| libsbml.UNIT_KIND_TESLA = _libsbml.UNIT_KIND_TESLA |
Definition at line 7779 of file libsbml.py.
| libsbml.UNIT_KIND_VOLT = _libsbml.UNIT_KIND_VOLT |
Definition at line 7780 of file libsbml.py.
| libsbml.UNIT_KIND_WATT = _libsbml.UNIT_KIND_WATT |
Definition at line 7781 of file libsbml.py.
| libsbml.UNIT_KIND_WEBER = _libsbml.UNIT_KIND_WEBER |
Definition at line 7782 of file libsbml.py.
| libsbml.UnitsCheckOFF = _libsbml.UnitsCheckOFF |
Definition at line 6067 of file libsbml.py.
| libsbml.UnitsCheckON = _libsbml.UnitsCheckON |
Definition at line 6066 of file libsbml.py.
| libsbml.UnitsNotValidAttribute = _libsbml.UnitsNotValidAttribute |
Definition at line 30786 of file libsbml.py.
| libsbml.UNKNOWN_QUALIFIER = _libsbml.UNKNOWN_QUALIFIER |
Definition at line 31419 of file libsbml.py.
| libsbml.UnknownError = _libsbml.UnknownError |
Definition at line 30536 of file libsbml.py.
| libsbml.UnrecognisedSBOTerm = _libsbml.UnrecognisedSBOTerm |
Definition at line 30770 of file libsbml.py.
| libsbml.UnrecognizedElement = _libsbml.UnrecognizedElement |
Definition at line 30538 of file libsbml.py.
| libsbml.UnrecognizedXMLElement = _libsbml.UnrecognizedXMLElement |
Definition at line 29469 of file libsbml.py.
| libsbml.UnrecognizedXMLParserCode = _libsbml.UnrecognizedXMLParserCode |
Definition at line 29447 of file libsbml.py.
| libsbml.ValuesFromTriggerTimeNeedDelay = _libsbml.ValuesFromTriggerTimeNeedDelay |
Definition at line 30696 of file libsbml.py.
| libsbml.VariableNotValidAttribute = _libsbml.VariableNotValidAttribute |
Definition at line 30785 of file libsbml.py.
| libsbml.VolumeLitreDefExponentNotOne = _libsbml.VolumeLitreDefExponentNotOne |
Definition at line 30629 of file libsbml.py.
| libsbml.VolumeMetreDefExponentNot3 = _libsbml.VolumeMetreDefExponentNot3 |
Definition at line 30630 of file libsbml.py.
| libsbml.XMLAttributeTypeMismatch = _libsbml.XMLAttributeTypeMismatch |
Definition at line 29464 of file libsbml.py.
| libsbml.XMLBadColon = _libsbml.XMLBadColon |
Definition at line 29481 of file libsbml.py.
| libsbml.XMLBadNumber = _libsbml.XMLBadNumber |
Definition at line 29480 of file libsbml.py.
| libsbml.XMLBadUTF8Content = _libsbml.XMLBadUTF8Content |
Definition at line 29465 of file libsbml.py.
| libsbml.XMLContentEmpty = _libsbml.XMLContentEmpty |
Definition at line 29483 of file libsbml.py.
| libsbml.XMLEmptyValueNotPermitted = _libsbml.XMLEmptyValueNotPermitted |
Definition at line 29479 of file libsbml.py.
| libsbml.XMLErrorCodesUpperBound = _libsbml.XMLErrorCodesUpperBound |
Definition at line 29484 of file libsbml.py.
| libsbml.XMLExpectedQuotedString = _libsbml.XMLExpectedQuotedString |
Definition at line 29478 of file libsbml.py.
| libsbml.XMLFileOperationError = _libsbml.XMLFileOperationError |
Definition at line 29444 of file libsbml.py.
| libsbml.XMLFileUnreadable = _libsbml.XMLFileUnreadable |
Definition at line 29442 of file libsbml.py.
| libsbml.XMLFileUnwritable = _libsbml.XMLFileUnwritable |
Definition at line 29443 of file libsbml.py.
| libsbml.XMLNetworkAccessError = _libsbml.XMLNetworkAccessError |
Definition at line 29445 of file libsbml.py.
| libsbml.XMLOutOfMemory = _libsbml.XMLOutOfMemory |
Definition at line 29441 of file libsbml.py.
| libsbml.XMLTagMismatch = _libsbml.XMLTagMismatch |
Definition at line 29457 of file libsbml.py.
| libsbml.XMLTranscoderError = _libsbml.XMLTranscoderError |
Definition at line 29448 of file libsbml.py.
| libsbml.XMLUnexpectedEOF = _libsbml.XMLUnexpectedEOF |
Definition at line 29472 of file libsbml.py.
| libsbml.XMLUnknownError = _libsbml.XMLUnknownError |
Definition at line 29440 of file libsbml.py.
| libsbml.ZeroDCompartmentContainment = _libsbml.ZeroDCompartmentContainment |
Definition at line 30640 of file libsbml.py.
| libsbml.ZeroDimensionalCompartmentConst = _libsbml.ZeroDimensionalCompartmentConst |
Definition at line 30637 of file libsbml.py.
| libsbml.ZeroDimensionalCompartmentSize = _libsbml.ZeroDimensionalCompartmentSize |
Definition at line 30635 of file libsbml.py.
| libsbml.ZeroDimensionalCompartmentUnits = _libsbml.ZeroDimensionalCompartmentUnits |
Definition at line 30636 of file libsbml.py.