repressilator.nb

read in an SBML file and display the verbose listing

$File Name:repressilator.xml\nSBML Level 2 Version 1$

ID	Name	Dimension	Size	Units	Derived Units	Outside	Constant
cell	cell	3	···	volume	volume	···	True

ID	Name	Compartment	Type	I.C.	Units	Derived Units	B.C	Constant	Charge
x	x	cell	···	···	···	···	False	False	···
y	y	cell	···	···	···	···	False	False	···
z	z	cell	···	···	···	···	False	False	···
py	py	cell	···	···	···	···	False	False	···
px	px	cell	amount	5.	substance	substance	False	False	···
pz	pz	cell	amount	15.	substance	substance	False	False	···
null	null	cell	···	···	···	···	True	True	···

ID	Name	Value	Units	Derived Units	Constant
alpha	alpha	250.	···	···	True
beta	beta	5.	···	···	True
alpha0	alpha0	0	···	···	True
alpha1	alpha1	0	···	···	True
n	n	2.1	···	···	True
k1	k1	1.	···	···	True
K	K	1.	···	···	True

Name

Fast

Reaction

Modifiers

Parameters

Formula

Contribution to ODEs

reaction1

False

null ⇔ x

···

250./(1. + pz[t]^2.1) - 1.*x[t]

x'[t]==250./(1. + pz[t]^2.1) - 1.*x[t]

reaction2

False

null ⇔ y

···

250./(1. + px[t]^2.1) - 1.*y[t]

y'[t]==250./(1. + px[t]^2.1) - 1.*y[t]

reaction3

False

null ⇔ z

···

250./(1. + py[t]^2.1) - 1.*z[t]

z'[t]==250./(1. + py[t]^2.1) - 1.*z[t]

reaction4

False

px ⇔ null

···

-5.*(-px[t] + x[t])

px'[t]==5.*(-px[t] + x[t])

reaction5

False

py ⇔ null

···

-5.*(-py[t] + y[t])

py'[t]==5.*(-py[t] + y[t])

reaction6

False

pz ⇔ null

···

-5.*(-pz[t] + z[t])

pz'[t]==5.*(-pz[t] + z[t])

Variable	ODEs
px	px'[t]==5.*(-px[t] + x[t])
py	py'[t]==5.*(-py[t] + y[t])
pz	pz'[t]==5.*(-pz[t] + z[t])
x	x'[t]==250./(1. + pz[t]^2.1) - 1.*x[t]
y	y'[t]==250./(1. + px[t]^2.1) - 1.*y[t]
z	z'[t]==250./(1. + py[t]^2.1) - 1.*z[t]

Created by Mathematica (February 27, 2004)