File Name:repressilator.xml SBML Level 2 Version 1
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Model Name: Repressilator Model Model id: repressilator
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Compartments
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| ID |
Name |
Dimension |
Size |
Units |
Derived Units |
Outside |
Constant |
| cell |
cell |
3 |
... |
volume |
volume |
... |
True |
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Species
|
| ID |
Name |
Compartment |
Type |
I.C. |
Units |
Derived Units |
B.C |
Constant |
Charge |
| x |
x |
cell |
... |
... |
... |
... |
False |
False |
... |
| y |
y |
cell |
... |
... |
... |
... |
False |
False |
... |
| z |
z |
cell |
... |
... |
... |
... |
False |
False |
... |
| py |
py |
cell |
... |
... |
... |
... |
False |
False |
... |
| px |
px |
cell |
amount |
5. |
substance |
substance |
False |
False |
... |
| pz |
pz |
cell |
amount |
15. |
substance |
substance |
False |
False |
... |
| null |
null |
cell |
... |
... |
... |
... |
True |
True |
... |
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Global Parameters
|
| ID |
Name |
Value |
Units |
Derived Units |
Constant |
| alpha |
alpha |
250. |
... |
... |
True |
| beta |
beta |
5. |
... |
... |
True |
| alpha0 |
alpha0 |
0 |
... |
... |
True |
| alpha1 |
alpha1 |
0 |
... |
... |
True |
| n |
n |
2.1 |
... |
... |
True |
| k1 |
k1 |
1. |
... |
... |
True |
| K |
K |
1. |
... |
... |
True |
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Reactions, global and local contexts suppressed
|
| ID |
Name |
Fast |
Reaction |
Modifiers |
Parameters |
Formula |
Contribution to ODEs |
| reaction1 |
reaction1 |
False |
null <--> x |
pz |
... |
250./(1. + pz^2.1) - 1.*x |
x'=250./(1. + pz^2.1) - 1.*x |
| reaction2 |
reaction2 |
False |
null <--> y |
px |
... |
250./(1. + px^2.1) - 1.*y |
y'=250./(1. + px^2.1) - 1.*y |
| reaction3 |
reaction3 |
False |
null <--> z |
py |
... |
250./(1. + py^2.1) - 1.*z |
z'=250./(1. + py^2.1) - 1.*z |
| reaction4 |
reaction4 |
False |
px <--> null |
x |
... |
-5.*(-px + x) |
px'=5.*(-px + x) |
| reaction5 |
reaction5 |
False |
py <--> null |
y |
... |
-5.*(-py + y) |
py'=5.*(-py + y) |
| reaction6 |
reaction6 |
False |
pz <--> null |
z |
... |
-5.*(-pz + z) |
pz'=5.*(-pz + z) |
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Differential Equations, global context suppressed
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| Variable |
ODEs |
| px |
px'=5.*(-px + x) |
| py |
py'=5.*(-py + y) |
| pz |
pz'=5.*(-pz + z) |
| x |
x'=250./(1. + pz^2.1) - 1.*x |
| y |
y'=250./(1. + px^2.1) - 1.*y |
| z |
z'=250./(1. + py^2.1) - 1.*z |
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