File Name:repressilator.xml
SBML Level 2 Version 1

Model Name: Repressilator Model
Model id: repressilator


Compartments
ID Name Dimension Size Units Derived Units Outside Constant
cell cell 3 ... volume volume ... True


Species
ID Name Compartment Type I.C. Units Derived Units B.C Constant Charge
x x cell ... ... ... ... False False ...
y y cell ... ... ... ... False False ...
z z cell ... ... ... ... False False ...
py py cell ... ... ... ... False False ...
px px cell amount 5. substance substance False False ...
pz pz cell amount 15. substance substance False False ...
null null cell ... ... ... ... True True ...


Global Parameters
ID Name Value Units Derived Units Constant
alpha alpha 250. ... ... True
beta beta 5. ... ... True
alpha0 alpha0 0 ... ... True
alpha1 alpha1 0 ... ... True
n n 2.1 ... ... True
k1 k1 1. ... ... True
K K 1. ... ... True


Reactions, global and local contexts suppressed
ID Name Fast Reaction Modifiers Parameters Formula Contribution to ODEs
reaction1 reaction1 False null <--> x pz ... 250./(1. + pz^2.1) - 1.*x x'=250./(1. + pz^2.1) - 1.*x
reaction2 reaction2 False null <--> y px ... 250./(1. + px^2.1) - 1.*y y'=250./(1. + px^2.1) - 1.*y
reaction3 reaction3 False null <--> z py ... 250./(1. + py^2.1) - 1.*z z'=250./(1. + py^2.1) - 1.*z
reaction4 reaction4 False px <--> null x ... -5.*(-px + x) px'=5.*(-px + x)
reaction5 reaction5 False py <--> null y ... -5.*(-py + y) py'=5.*(-py + y)
reaction6 reaction6 False pz <--> null z ... -5.*(-pz + z) pz'=5.*(-pz + z)


Differential Equations, global context suppressed
Variable ODEs
px px'=5.*(-px + x)
py py'=5.*(-py + y)
pz pz'=5.*(-pz + z)
x x'=250./(1. + pz^2.1) - 1.*x
y y'=250./(1. + px^2.1) - 1.*y
z z'=250./(1. + py^2.1) - 1.*z



Generated by jamestkirk with MathSBML 2.2.1-beta-17 (25-Feb-2004) on Slartibartifast at 27-February-2004 23:22:27.290761 using PowerPC/PowerMac/MacOSX