Model Builder: Annotations in MathSBML

• A list containing symbolic SBML object labeled "annotation", equivalent to the output of annotationToSymbolicSBML as in:

  	ann=annotationToSymbolicSBML[fred->wilma, barney->betty];
  	addSpecies[X, annotation->ann];
  	

  Note that the value of ann in this case is

  	XMLElement["annotation",{"xmlns:"->""},
  	   {XMLElement["fred",{},{"wilma"}], XMLElement["barney",{},{"betty"}]}]
  	

• An option list, as in

	addSpecies[X, annotation->{fred->wilma, barney->betty}]
	

To set the value of the annotation namespace, see setAnnotationNamespace.

To set the value of the annotation package, see setAnnotationPackage.

To set model annotations use setModelAnnotation.

To set SBML file annotations use setSBMLAnnotation.

Example

Input:  setAnnotationNamespace["http://flintstones"];
        setAnnotationPackage["bedrock"];
        addSpecies[X, annotation->{fred->wilma,barney->betty};
        createModel[];
Output: 
<?xml version="1.0" encoding="UTF-8"?>
<!-- Generated 1-May-2004 08:44:50.280268 -->
<!-- Generated by MathSBML 2.3.1b (1-May-2004) -->
<sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1">
 <model id="test" name="test">
  <!-- <listOfFunctionDefinitions/> -->
  <!-- <listOfUnitDefinitions/> -->
  <listOfCompartments>
   <compartment id="Compartment1"
       name="Compartment1"/>
  </listOfCompartments>
  <listOfSpecies>
   <species id="X"
       name="X"
       compartment="Compartment1"
       boundaryCondition="false"
       constant="false">
    <annotation xmlns:bedrock="http://flintstones.com">
     <bedrock:fred>wilma</fred>
     <bedrock:barney>betty</barney>
    </annotation>
   </species>
  </listOfSpecies>
  <!-- <listOfParameters/> -->
  <!-- <listOfRules/> -->
  <!-- <listOfReactions/> -->
  <!-- <listOfEvents/> -->
 </model>
</sbml>