Changes in MathSBML version 2.4

Note: Version 2.4 has been superceded by MathSBML Version 2.5. The information on this page does not reflect the latest version of MathSBML.

Version 2.5.0 release date: 1 June 2005.

Version 2.4.0 release date: 24 September 2004 (previous release).

This page summarizes the changes in MathSBML Version 2.4 that were implemented since the release of Version 2.4.0.

To see a summary of changes in earlier release, Click here.

• Major changes
  • Support for time csymbol.
  • Support Units of the Species.
  • DAE Support.
  • Various bug fixes.

  ---

• Model Builder
  • Enforces correct rule ordering as per spec.
  • Support for time csymbol.
  • Support for <cn type="e-notation" ...>.
  • Correctly support both inline and MathML based stoichiometry
  • Nested function definitions
  • Allow events to call functions
  • Improved annotation support
  • Enfoces SId checking for identifiers
  • Allow use of "_" character in identifiers (displayed and/or input as underbracket u[ in Mathematica

  ---

• SBML Read
  • Support for time csymbol.
  • Support for <cn type="e-notation" ...>.
  • Correctly support both inline and MathML based stoichiometry
  • Corrected support for MathML piecewise
  • Additional fields returned:SBMLAssignmentRUles,SBMLCompartments,SBMLSpeciesCompartmentAssociations.
  • Checks for correct rule ordering as per spec.

  ---

• SBMLWrite
  • HTML Style Sheets
  • Correct formats in several HTML fields
  • BerkeleyMadonna output format supported

  ---

• SBMLNDSolve
  • Differential/Algebraic Equation (DAE) Support (requires Matehmatica 4.1++
  • Supports nested function definitions.

  ---

• SBMLPlot
  • Supports all standard Mathematica Plot and Graphics options.
  • Improved support for logarithmic plots.

  ---

• dataTable
  • Mew function: outputs a table of data from a simulation.
  • Outputs in standard formats: CSV, HDF, List, MAT, MTX, NB, TSV, Table

  ---