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SBMLSoftwareMatrix tmp

Using copy & paste

Capabilities Frameworks API Dep. Platforms SBML Availabil.
   
ABC-SysBio Python F F
acslXtreme $ $
ALC F F
Antimony C, C++ F F
Asmparts F F
Athena SBW, C# F F
AutoSBW SBW SBW F F
AVIS various F F
BALSA Sigtran
BASIS WS F F
BetaWB F F
BiGG F
BiNoM F F
BiNoM Cytoscape Plugin Cytoscape F F
Bio Sketch Pad BioCharon F F
BioBayes F F
BIOCHAM F F
BioCharon CHARON
BioCyc F $
BioGrid
Biological Networks F $
BioMet Toolbox F F
BioModels Database WS F F
BioModels Importer SBW, .NET F F
BioNessie F F
BioNetGen F F
BioPathwise Java, MATLAB $ $
BioRica F F
BioSens BSP F F
BioSPICE Dashboard Java F F
BioSpreadsheet BSP
BioSyS Java F F
BioTapestry F F
BioUML F F
braincirc F F
BRENDA F $
BSTLab MATLAB F F
ByoDyn Python, WS F F
CADLIVE .NET F F
Cain C++ F F
CARMEN Perl, CellDesigner F F
Cell Illustrator $ $
CellDesigner Java F F
Cellerator MMA F $
CellMC F F
CellML2SBML F F
CellNetAnalyzer MATLAB MATLAB F $
Cellware F $
CLEML F F
CL-SBML Lisp Lisp F F
COBRA MATLAB F F
CompuCell3D Python, C++ F F
ConsensusPathDB F F
COPASI C++, Java, Python, SBW F $
CRdata R F F
CycSim Java, WS F $
Cytoscape Java F F
Cyto-Sim F F
DBSolve F F
Dizzy F F
DOTcvpSB MatLab MatLab F $
E-CELL F F
ecellJ F F
EPE Java F F
ESS BSP F F
Facile Perl F F
FASIMU F F
FBASBW SBW SBW F F
FERN Java F F
Fluxor BSP F F
Genetdes F $
Gepasi F F
Gillespie2 C++, Python F F
GNA F $
GNU McSim F F
GRENDEL F F
HSMB BioCharon
HybridSBML BioCharon
iBioSim F F
Insilico Discovery $ $
InsilicoIDE Python F F
JACOBIAN F $
Jacobian Viewer SBW SBW F F
Jarnac SBW SBW F F
JarnacLite SBW, C# F F
JDesigner SBW SBW F F
JigCell XPP F F
JSBML Java F F
JSim Java, C F F
JWS Online F F
Karyote* F F
KEGG2SBML F $
KeggConverter F F
Kineticon F F
Kinsolver*
libAnnotationSBML Java F F
libSBML C, C++, .NET, Java, Lisp, Python, Perl, Matlab, Octave, Ruby F F
libStruct C, C++, C# LAPACK F F
MathSBML MMA MMA F F
Medicel $ $
MesoRD F F
Meta-All Oracle F F
MetaFluxNet .NET F $
Metannogen F F
Metatool MATLAB, Octave MATLAB, Octave F $
MetExplore F F
MetNetMaker MS, Access F F
MIRIAM Resources WS F F
MMT2
modelMaGe WS Python, COPASI F F
Modesto F F
Moleculizer F F
Monod F F
MOOSE C++, Python Python, Genesis F F
Narrator F F
NetBuilder' Python F F
NetPath SPARQL F F
NetPro $ $
Odefy Octave, Java F $
Omix Java, OVL F $
ONDEX Java, WS F F
OptFlux Java F F
Oscill8 F F
PANTHER Pathway F F
PathArt $ $
Pathway Access CellDesigner CellDesigner F F
Pathway Analyser F F
Pathway Builder BSP F F
Pathway Solver Pathway, Studio F $
Pathway Tools F $
PathwayLab MATLAB, MMA Visio $ $
PATIKAweb F $
PaVESy
PAYAO
PET Perl F F
PhysioLab Modeler
PINT F F
PK-Sim R, MatLab F $
PNK SBW F F
PottersWheel MATLAB MATLAB F $
PRISM F F
ProcessDB ? ?
ProMoT F $
PROTON Java, CORBA J2SDK, FastObjects F F
pysbml Python Python F F
PySCeS Python Python F F
RANGE R F F
Reactome F F
ReMatch F F
RMBNToolbox MATLAB F F
roadRunner SBW, .NET F F
RSBML R R F F
SABIO-RK F $
SAINT F F
SBFC Java F F
SBML Harvester Groovy, OWLAPI, HermiT F F
SBML Layout .NET, SBW, WS F F
SBML ODE Solver C F F
SBML Translators SBW SBW F F
SBML2Antimony F F
SBML2LaTeX WS F F
SBML2NEURON Python Python, NEURON F F
SBML2SMW Semantic, MediaWiki, CellDesigner F F
SBML2TikZ .NET SBMLLayout F F
SBMLeditor CellDesigner, Java F F
SBML-PET-MPI F F
SBMLR R R F F
SBML-SAT MATLAB F F
SBML-shorthand Python F F
SBMLSim BioCharon, MATLAB F F
SBMLsqueezer Java F F
sbmltidy tidy F F
SBMLToolbox MATLAB MATLAB F F
SBMM assistant F
SBO WS F F
SBSI F F
SBToolbox2 MATLAB MATLAB, SBMLToolbox F F
SBW C, C++, .NET, Java, Python, WS F F
sbw: auto layout SBW, .NET F F
sbw: bifurcation discovery SBW F F
sbw: javasim Java SBW F F
sbw: stochastic simulator SBW F F
SCIpath
semanticSBML Python F F
SensSB MATLAB MATLAB F $
SGMP F F
Sigmoid* F F
SIGNALIGN
SigPath F F
SigTran
SIMBA MATLAB $ $
SimBiology MATLAB $ $
Simpathica Octave F F
SimPheny* $ $
Simulate3D SBW, .NET F F
SimWiz F F
SloppyCell Python F F
SmartCell F $
Snoopy F F
SPDBS F F
SRS $
StochKit C++ F $
StochSim F F
STOCKS F F
SurreyFBA F F
Sycamore F F
SynBioSS F F
TERANODE Suite $ $
Tide Python F F
TinkerCell C, C++, Python F F
Trelis F F
UTKornTools BSP F F
VANTED F F
Vcell F F
WebCell F F
WinSCAMP F F
xCellerator MMA F F
Xholon F F
XPPAUT F F
This matrix was generated on 2011-05-05 (total number of tools: 219)

using include:





Capabilities Frameworks API Dep. Platforms SBML Availabil.
   



ABC-SysBio Python F F
acslXtreme $ $
ALC F F
Antimony C, C++ F F
Asmparts F F
Athena SBW, C# F F
AutoSBW SBW SBW F F
AVIS various F F
BALSA Sigtran
BASIS WS F F
BetaWB F F
BiGG F
BiNoM F F
BiNoM Cytoscape Plugin Cytoscape F F
Bio Sketch Pad BioCharon F F
BioBayes F F
BIOCHAM F F
BioCharon CHARON
BioCyc F $
BioGrid
Biological Networks F $
BioMet Toolbox F F
BioModels Database WS F F
BioModels Importer SBW, .NET F F
BioNessie F F
BioNetGen F F
BioPathwise Java, MATLAB $ $
BioRica F F
BioSens BSP F F
BioSPICE Dashboard Java F F
BioSpreadsheet BSP
BioSyS Java F F
BioTapestry F F
BioUML F F
braincirc F F
BRENDA F $
BSTLab MATLAB F F
ByoDyn Python, WS F F
CADLIVE .NET F F
Cain C++ F F
CARMEN Perl, CellDesigner F F
Cell Illustrator $ $
CellDesigner Java F F
Cellerator MMA F $
CellMC F F
CellML2SBML F F
CellNetAnalyzer MATLAB MATLAB F $
Cellware F $
CLEML F F
CL-SBML Lisp Lisp F F
COBRA MATLAB F F
CompuCell3D Python, C++ F F
ConsensusPathDB F F
COPASI C++, Java, Python, SBW F $
CRdata R F F
CycSim Java, WS F $
Cytoscape Java F F
Cyto-Sim F F
DBSolve F F
Dizzy F F
DOTcvpSB MatLab MatLab F $
E-CELL F F
ecellJ F F
EPE Java F F
ESS BSP F F
Facile Perl F F
FASIMU F F
FBASBW SBW SBW F F
FERN Java F F
Fluxor BSP F F
Genetdes F $
Gepasi F F
Gillespie2 C++, Python F F
GNA F $
GNU McSim F F
GRENDEL F F
HSMB BioCharon
HybridSBML BioCharon
iBioSim F F
Insilico Discovery $ $
InsilicoIDE Python F F
JACOBIAN F $
Jacobian Viewer SBW SBW F F
Jarnac SBW SBW F F
JarnacLite SBW, C# F F
JDesigner SBW SBW F F
JigCell XPP F F
JSBML Java F F
JSim Java, C F F
JWS Online F F
Karyote* F F
KEGG2SBML F $
KeggConverter F F
Kineticon F F
Kinsolver*
libAnnotationSBML Java F F
libSBML C, C++, .NET, Java, Lisp, Python, Perl, Matlab, Octave, Ruby F F
libStruct C, C++, C# LAPACK F F
MathSBML MMA MMA F F
Medicel $ $
MesoRD F F
Meta-All Oracle F F
MetaFluxNet .NET F $
Metannogen F F
Metatool MATLAB, Octave MATLAB, Octave F $
MetExplore F F
MetNetMaker MS, Access F F
MIRIAM Resources WS F F
MMT2
modelMaGe WS Python, COPASI F F
Modesto F F
Moleculizer F F
Monod F F
MOOSE C++, Python Python, Genesis F F
Narrator F F
NetBuilder' Python F F
NetPath SPARQL F F
NetPro $ $
Odefy Octave, Java F $
Omix Java, OVL F $
ONDEX Java, WS F F
OptFlux Java F F
Oscill8 F F
PANTHER Pathway F F
PathArt $ $
Pathway Access CellDesigner CellDesigner F F
Pathway Analyser F F
Pathway Builder BSP F F
Pathway Solver Pathway, Studio F $
Pathway Tools F $
PathwayLab MATLAB, MMA Visio $ $
PATIKAweb F $
PaVESy
PAYAO
PET Perl F F
PhysioLab Modeler
PINT F F
PK-Sim R, MatLab F $
PNK SBW F F
PottersWheel MATLAB MATLAB F $
PRISM F F
ProcessDB ? ?
ProMoT F $
PROTON Java, CORBA J2SDK, FastObjects F F
pysbml Python Python F F
PySCeS Python Python F F
RANGE R F F
Reactome F F
ReMatch F F
RMBNToolbox MATLAB F F
roadRunner SBW, .NET F F
RSBML R R F F
SABIO-RK F $
SAINT F F
SBFC Java F F
SBML Harvester Groovy, OWLAPI, HermiT F F
SBML Layout .NET, SBW, WS F F
SBML ODE Solver C F F
SBML Translators SBW SBW F F
SBML2Antimony F F
SBML2LaTeX WS F F
SBML2NEURON Python Python, NEURON F F
SBML2SMW Semantic, MediaWiki, CellDesigner F F
SBML2TikZ .NET SBMLLayout F F
SBMLeditor CellDesigner, Java F F
SBML-PET-MPI F F
SBMLR R R F F
SBML-SAT MATLAB F F
SBML-shorthand Python F F
SBMLSim BioCharon, MATLAB F F
SBMLsqueezer Java F F
sbmltidy tidy F F
SBMLToolbox MATLAB MATLAB F F
SBMM assistant F
SBO WS F F
SBSI F F
SBToolbox2 MATLAB MATLAB, SBMLToolbox F F
SBW C, C++, .NET, Java, Python, WS F F
sbw: auto layout SBW, .NET F F
sbw: bifurcation discovery SBW F F
sbw: javasim Java SBW F F
sbw: stochastic simulator SBW F F
SCIpath
semanticSBML Python F F
SensSB MATLAB MATLAB F $
SGMP F F
Sigmoid* F F
SIGNALIGN
SigPath F F
SigTran
SIMBA MATLAB $ $
SimBiology MATLAB $ $
Simpathica Octave F F
SimPheny* $ $
Simulate3D SBW, .NET F F
SimWiz F F
SloppyCell Python F F
SmartCell F $
Snoopy F F
SPDBS F F
SRS $
StochKit C++ F $
StochSim F F
STOCKS F F
SurreyFBA F F
Sycamore F F
SynBioSS F F
TERANODE Suite $ $
Tide Python F F
TinkerCell C, C++, Python F F
Trelis F F
UTKornTools BSP F F
VANTED F F
Vcell F F
WebCell F F
WinSCAMP F F
xCellerator MMA F F
Xholon F F
XPPAUT F F
This matrix was generated on 2011-05-05 (total number of tools: 219)

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This page was last modified 22:56, 5 May 2011.



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