SBML.org — the global portal for all things SBML

2009 SBML Hackathon Wiki

(Test suite materials)
Current revision (17:22, 26 March 2009) (edit) (undo)
(Test suite materials)
 
Line 10: Line 10:
where the directories are as follows:
where the directories are as follows:
-
* <span style="background-color: #bbb"><em>results-directory</em></span> is the directory containing your simulation result files. It must be a flat directory containing files named <code>00001.csv</code>, <code>00002.csv</code>, etc.
+
* <span style="background-color: #bbb"><em>results-directory</em></span> is the directory containing your simulation result files. It must be a flat directory containing files named "<code>00001.csv</code>", "<code>00002.csv</code>", etc.
* <span style="background-color: #bbb"><em>cases-directory</em></span> is the path to <code>cases/semantic</code> directory that you downloaded from SF.net. (Note: you have to supply the path to the <code>/semantic</code> directory. So for example, if you unpack the cases zip file to <code>/tmp</code> on your system, the path would be <code>/tmp/cases/semantic</code>.)
* <span style="background-color: #bbb"><em>cases-directory</em></span> is the path to <code>cases/semantic</code> directory that you downloaded from SF.net. (Note: you have to supply the path to the <code>/semantic</code> directory. So for example, if you unpack the cases zip file to <code>/tmp</code> on your system, the path would be <code>/tmp/cases/semantic</code>.)

Current revision

Test suite materials

sourceforge.net/project/showfiles.php?group_id=71971&package_id=90209 this link] to the SF.net download page for the test cases. Get the latest version of the file named "sbml-test-cases-YYYY-MM-DD.zip".//sourceforge.net/project/showfiles.php?group_id=71971&package_id=90209 this link] to the SF.net download page for the test cases. Get the latest version of the file named "sbml-test-cases-YYYY-MM-DD.zip".

Use this link to get the jar file for a simple test runner written by Kimberley Begley. The usage is

java -jar cmd-line-runner.jar results-directory cases-directory where the directories are as follows:

  • results-directory is the directory containing your simulation result files. It must be a flat directory containing files named "00001.csv", "00002.csv", etc.
  • cases-directory is the path to cases/semantic directory that you downloaded from SF.net. (Note: you have to supply the path to the /semantic directory. So for example, if you unpack the cases zip file to /tmp on your system, the path would be /tmp/cases/semantic.)


Please use our issue tracking system for any questions or suggestions about this website.