Geometry Member List

This is the complete list of members for Geometry, including all inherited members.

addAdjacentDomains(const AdjacentDomains *ad)	Geometry
addCoordinateComponent(const CoordinateComponent *cc)	Geometry
addCVTerm(CVTerm *term, bool newBag=false)	SBase
addDomain(const Domain *d)	Geometry
addDomainType(const DomainType *dt)	Geometry
addGeometryDefinition(const GeometryDefinition *gd)	Geometry
addModifiedDate(Date *date)	SBase
addSampledField(const SampledField *sf)	Geometry
appendAnnotation(const XMLNode *annotation)	SBase	virtual
appendAnnotation(const std::string &annotation)	SBase	virtual
appendNotes(const XMLNode *notes)	SBase
appendNotes(const std::string &notes)	SBase
clone() const	Geometry	virtual
createAdjacentDomains()	Geometry
createAnalyticGeometry()	Geometry
createCoordinateComponent()	Geometry
createCSGeometry()	Geometry
createDomain()	Geometry
createDomainType()	Geometry
createMixedGeometry()	Geometry
createParametricGeometry()	Geometry
createSampledField()	Geometry
createSampledFieldGeometry()	Geometry
deleteDisabledPlugins(bool recursive=true)	SBase
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix)	SBase
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag)	SBase
Geometry(unsigned int level=SpatialExtension::getDefaultLevel(), unsigned int version=SpatialExtension::getDefaultVersion(), unsigned int pkgVersion=SpatialExtension::getDefaultPackageVersion())	Geometry
Geometry(SpatialPkgNamespaces *spatialns)	Geometry
Geometry(const Geometry &orig)	Geometry
getAdjacentDomains(unsigned int n)	Geometry
getAdjacentDomains(unsigned int n) const	Geometry
getAdjacentDomains(const std::string &sid)	Geometry
getAdjacentDomains(const std::string &sid) const	Geometry
getAdjacentDomainsByDomain1(const std::string &sid) const	Geometry
getAdjacentDomainsByDomain1(const std::string &sid)	Geometry
getAdjacentDomainsByDomain2(const std::string &sid) const	Geometry
getAdjacentDomainsByDomain2(const std::string &sid)	Geometry
getAllElements(ElementFilter *filter=NULL)	Geometry	virtual
getAllElementsFromPlugins(ElementFilter *filter=NULL)	SBase	virtual
getAncestorOfType(int type, const std::string &pkgName="core")	SBase
getAncestorOfType(int type, const std::string pkgName="core") const	SBase
getAnnotation()	SBase
getAnnotation() const	SBase
getAnnotationString()	SBase
getAnnotationString() const	SBase
getColumn() const	SBase
getCoordinateComponent(unsigned int n)	Geometry
getCoordinateComponent(unsigned int n) const	Geometry
getCoordinateComponent(const std::string &sid)	Geometry
getCoordinateComponent(const std::string &sid) const	Geometry
getCoordinateComponentByKind(CoordinateKind_t kind) const	Geometry
getCoordinateComponentByKind(CoordinateKind_t kind)	Geometry
getCoordinateSystem() const	Geometry
getCoordinateSystemAsString() const	Geometry
getCreatedDate() const	SBase
getCreatedDate()	SBase
getCVTerm(unsigned int n)	SBase
getCVTerms()	SBase
getCVTerms() const	SBase
getDisabledPlugin(unsigned int n)	SBase
getDisabledPlugin(unsigned int n) const	SBase
getDomain(unsigned int n)	Geometry
getDomain(unsigned int n) const	Geometry
getDomain(const std::string &sid)	Geometry
getDomain(const std::string &sid) const	Geometry
getDomainByDomainType(const std::string &sid) const	Geometry
getDomainByDomainType(const std::string &sid)	Geometry
getDomainType(unsigned int n)	Geometry
getDomainType(unsigned int n) const	Geometry
getDomainType(const std::string &sid)	Geometry
getDomainType(const std::string &sid) const	Geometry
getElementByMetaId(const std::string &metaid)	Geometry	virtual
SBase::getElementByMetaId(const std::string &metaid) const	SBase
getElementBySId(const std::string &id)	Geometry	virtual
SBase::getElementBySId(const std::string &id) const	SBase	virtual
getElementName() const	Geometry	virtual
getGeometryDefinition(unsigned int n)	Geometry
getGeometryDefinition(unsigned int n) const	Geometry
getGeometryDefinition(const std::string &sid)	Geometry
getGeometryDefinition(const std::string &sid) const	Geometry
getId() const	Geometry	virtual
getIdAttribute() const	SBase
getLevel() const	SBase
getLine() const	SBase
getListOfAdjacentDomains() const	Geometry
getListOfAdjacentDomains()	Geometry
getListOfCoordinateComponents() const	Geometry
getListOfCoordinateComponents()	Geometry
getListOfDomains() const	Geometry
getListOfDomains()	Geometry
getListOfDomainTypes() const	Geometry
getListOfDomainTypes()	Geometry
getListOfGeometryDefinitions() const	Geometry
getListOfGeometryDefinitions()	Geometry
getListOfSampledFields() const	Geometry
getListOfSampledFields()	Geometry
getMetaId() const	SBase
getMetaId()	SBase
getModel() const	SBase
getModelHistory() const	SBase
getModelHistory()	SBase
getModifiedDate(unsigned int n)	SBase
getName() const	SBase	virtual
getNamespaces() const	SBase	virtual
getNotes()	SBase
getNotes() const	SBase
getNotesString()	SBase
getNotesString() const	SBase
getNumAdjacentDomains() const	Geometry
getNumCoordinateComponents() const	Geometry
getNumCVTerms() const	SBase
getNumDisabledPlugins() const	SBase
getNumDomains() const	Geometry
getNumDomainTypes() const	Geometry
getNumGeometryDefinitions() const	Geometry
getNumModifiedDates()	SBase
getNumPlugins() const	SBase
getNumSampledFields() const	Geometry
getPackageCoreVersion() const	SBase
getPackageName() const	SBase
getPackageVersion() const	SBase
getParentSBMLObject()	SBase
getParentSBMLObject() const	SBase
getPlugin(const std::string &package)	SBase
getPlugin(const std::string &package) const	SBase
getPlugin(unsigned int n)	SBase
getPlugin(unsigned int n) const	SBase
getPrefix() const	SBase
getResourceBiologicalQualifier(std::string resource) const	SBase
getResourceModelQualifier(std::string resource) const	SBase
getSampledField(unsigned int n)	Geometry
getSampledField(unsigned int n) const	Geometry
getSampledField(const std::string &sid)	Geometry
getSampledField(const std::string &sid) const	Geometry
getSBMLDocument() const	SBase
getSBMLDocument()	SBase
getSBOTerm() const	SBase
getSBOTermAsURL() const	SBase
getSBOTermID() const	SBase
getTypeCode() const	Geometry	virtual
getURI() const	SBase
getUserData() const	SBase
getVersion() const	SBase
hasRequiredAttributes() const	Geometry	virtual
hasValidLevelVersionNamespaceCombination()	SBase
isPackageEnabled(const std::string &pkgName) const	SBase
isPackageURIEnabled(const std::string &pkgURI) const	SBase
isPkgEnabled(const std::string &pkgName) const	SBase
isPkgURIEnabled(const std::string &pkgURI) const	SBase
isSetAnnotation() const	SBase
isSetCoordinateSystem() const	Geometry
isSetCreatedDate() const	SBase
isSetId() const	Geometry	virtual
isSetIdAttribute() const	SBase
isSetMetaId() const	SBase
isSetModelHistory() const	SBase
isSetModifiedDate() const	SBase
isSetName() const	SBase	virtual
isSetNotes() const	SBase
isSetSBOTerm() const	SBase
isSetUserData() const	SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb)	SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const	SBase
matchesSBMLNamespaces(const SBase *sb)	SBase
matchesSBMLNamespaces(const SBase *sb) const	SBase
operator=(const Geometry &rhs)	Geometry
SBase::operator=(const SBase &rhs)	SBase
read(const XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED)	SBase
removeAdjacentDomains(unsigned int n)	Geometry
removeAdjacentDomains(const std::string &sid)	Geometry
removeCoordinateComponent(unsigned int n)	Geometry
removeCoordinateComponent(const std::string &sid)	Geometry
removeDomain(unsigned int n)	Geometry
removeDomain(const std::string &sid)	Geometry
removeDomainType(unsigned int n)	Geometry
removeDomainType(const std::string &sid)	Geometry
removeFromParentAndDelete()	SBase	virtual
removeGeometryDefinition(unsigned int n)	Geometry
removeGeometryDefinition(const std::string &sid)	Geometry
removeSampledField(unsigned int n)	Geometry
removeSampledField(const std::string &sid)	Geometry
removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true)	SBase
renameMetaIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
renameSIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
renameUnitSIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
replaceTopLevelAnnotationElement(const XMLNode *annotation)	SBase
replaceTopLevelAnnotationElement(const std::string &annotation)	SBase
setAnnotation(const XMLNode *annotation)	SBase	virtual
setAnnotation(const std::string &annotation)	SBase	virtual
setCoordinateSystem(const GeometryKind_t coordinateSystem)	Geometry
setCoordinateSystem(const std::string &coordinateSystem)	Geometry
setCreatedDate(Date *date)	SBase
setElementText(const std::string &text)	SBase	protectedvirtual
setId(const std::string &id)	Geometry	virtual
setIdAttribute(const std::string &sid)	SBase	virtual
setMetaId(const std::string &metaid)	SBase
setModelHistory(ModelHistory *history)	SBase
setName(const std::string &name)	SBase	virtual
setNamespaces(XMLNamespaces *xmlns)	SBase
setNotes(const XMLNode *notes)	SBase
setNotes(const std::string &notes, bool addXHTMLMarkup=false)	SBase
setSBOTerm(int value)	SBase	virtual
setSBOTerm(const std::string &sboid)	SBase	virtual
setUserData(void *userData)	SBase
toSBML()	SBase
toXMLNode()	SBase
unsetAnnotation()	SBase
unsetCoordinateSystem()	Geometry
unsetCreatedDate()	SBase
unsetCVTerms()	SBase
unsetId()	Geometry	virtual
unsetIdAttribute()	SBase
unsetMetaId()	SBase
unsetModelHistory()	SBase
unsetModifiedDates()	SBase
unsetName()	SBase	virtual
unsetNotes()	SBase
unsetSBOTerm()	SBase
unsetUserData()	SBase
~Geometry()	Geometry	virtual
~SBase()	SBase	virtual