Submodel Member List

This is the complete list of members for Submodel, including all inherited members.

addCVTerm(CVTerm *term, bool newBag=false)	SBase
addDeletion(const Deletion *deletion)	Submodel
addModifiedDate(Date *date)	SBase
appendAnnotation(const XMLNode *annotation)	SBase	virtual
appendAnnotation(const std::string &annotation)	SBase	virtual
appendNotes(const XMLNode *notes)	SBase
appendNotes(const std::string &notes)	SBase
clearInstantiation()	Submodel	virtual
clone() const	Submodel	virtual
CompBase(unsigned int level=CompExtension::getDefaultLevel(), unsigned int version=CompExtension::getDefaultVersion(), unsigned int pkgVersion=CompExtension::getDefaultPackageVersion())	CompBase
CompBase(CompPkgNamespaces *compns)	CompBase
CompBase(const CompBase &source)	CompBase
convertCSymbols(ASTNode *&math, const ASTNode *tcfdiv, const ASTNode *tcftimes)	Submodel	privatevirtual
convertTimeAndExtent()	Submodel	virtual
convertTimeAndExtentWith(const ASTNode *time, const ASTNode *xcf, const ASTNode *klmod)	Submodel	privatevirtual
createDeletion()	Submodel
createNewConversionFactor(std::string &cf, const ASTNode *newcf, std::string oldcf, Model *model)	Submodel	privatevirtual
deleteDisabledPlugins(bool recursive=true)	SBase
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix)	SBase
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag)	SBase
getAllElements(ElementFilter *filter=NULL)	Submodel	virtual
getAllElementsFromPlugins(ElementFilter *filter=NULL)	SBase	virtual
getAllInstantiatedElements()	Submodel	virtual
getAncestorOfType(int type, const std::string &pkgName="core")	SBase
getAncestorOfType(int type, const std::string pkgName="core") const	SBase
getAnnotation()	SBase
getAnnotation() const	SBase
getAnnotationString()	SBase
getAnnotationString() const	SBase
getColumn() const	SBase
getCreatedDate() const	SBase
getCreatedDate()	SBase
getCVTerm(unsigned int n)	SBase
getCVTerms()	SBase
getCVTerms() const	SBase
getDeletion(unsigned int n)	Submodel
getDeletion(unsigned int n) const	Submodel
getDeletion(const std::string &id)	Submodel
getDeletion(const std::string &id) const	Submodel
getDisabledPlugin(unsigned int n)	SBase
getDisabledPlugin(unsigned int n) const	SBase
getElementByMetaId(const std::string &metaid)	Submodel	virtual
CompBase::getElementByMetaId(const std::string &metaid) const	SBase
getElementBySId(const std::string &id)	Submodel	virtual
CompBase::getElementBySId(const std::string &id) const	SBase	virtual
getElementName() const	Submodel	virtual
getExtentConversionFactor() const	Submodel	virtual
getId() const	Submodel	virtual
getIdAttribute() const	SBase
getInstantiation()	Submodel	virtual
getInstantiation() const	Submodel	virtual
getLevel() const	SBase
getLine() const	SBase
getListOfDeletions() const	Submodel
getListOfDeletions()	Submodel
getMetaId() const	SBase
getMetaId()	SBase
getModel() const	SBase
getModelHistory() const	SBase
getModelHistory()	SBase
getModelRef() const	Submodel	virtual
getModifiedDate(unsigned int n)	SBase
getName() const	Submodel	virtual
getNamespaces() const	SBase	virtual
getNotes()	SBase
getNotes() const	SBase
getNotesString()	SBase
getNotesString() const	SBase
getNumCVTerms() const	SBase
getNumDeletions() const	Submodel
getNumDisabledPlugins() const	SBase
getNumModifiedDates()	SBase
getNumPlugins() const	SBase
getPackageCoreVersion() const	SBase
getPackageName() const	CompBase
getPackageURI() const	CompBase
getPackageVersion() const	CompBase
getParentModel(SBase *child)	CompBase	static
getParentSBMLObject()	SBase
getParentSBMLObject() const	SBase
getPlugin(const std::string &package)	SBase
getPlugin(const std::string &package) const	SBase
getPlugin(unsigned int n)	SBase
getPlugin(unsigned int n) const	SBase
getPrefix() const	SBase
getResourceBiologicalQualifier(std::string resource) const	SBase
getResourceModelQualifier(std::string resource) const	SBase
getSBMLDocument() const	SBase
getSBMLDocument()	SBase
getSBOTerm() const	SBase
getSBOTermAsURL() const	SBase
getSBOTermID() const	SBase
getSubstanceConversionFactor() const	Submodel	virtual
getTimeConversionFactor() const	Submodel	virtual
getTypeCode() const	Submodel	virtual
getURI() const	SBase
getUserData() const	SBase
getVersion() const	SBase
hasRequiredAttributes() const	Submodel	virtual
hasValidLevelVersionNamespaceCombination()	CompBase	protected
instantiate()	Submodel	virtual
isPackageEnabled(const std::string &pkgName) const	SBase
isPackageURIEnabled(const std::string &pkgURI) const	SBase
isPkgEnabled(const std::string &pkgName) const	SBase
isPkgURIEnabled(const std::string &pkgURI) const	SBase
isSetAnnotation() const	SBase
isSetCreatedDate() const	SBase
isSetExtentConversionFactor() const	Submodel	virtual
isSetId() const	Submodel	virtual
isSetIdAttribute() const	SBase
isSetMetaId() const	SBase
isSetModelHistory() const	SBase
isSetModelRef() const	Submodel	virtual
isSetModifiedDate() const	SBase
isSetName() const	Submodel	virtual
isSetNotes() const	SBase
isSetSBOTerm() const	SBase
isSetSubstanceConversionFactor() const	Submodel	virtual
isSetTimeConversionFactor() const	Submodel	virtual
isSetUserData() const	SBase
logEmptyString(const std::string &attribute, const std::string &element)	CompBase	protectedvirtual
logInvalidId(const std::string &attribute, const std::string &wrongattribute, const std::string object="")	CompBase	protectedvirtual
logMissingAttribute(const std::string &attribute, const std::string &element)	CompBase	protectedvirtual
logUnknownAttribute(const std::string &attribute, const std::string &element)	CompBase	protectedvirtual
logUnknownElement(const std::string &element)	CompBase	protectedvirtual
matchesRequiredSBMLNamespacesForAddition(const SBase *sb)	SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const	SBase
matchesSBMLNamespaces(const SBase *sb)	SBase
matchesSBMLNamespaces(const SBase *sb) const	SBase
operator=(const Submodel &source)	Submodel
CompBase::operator=(const CompBase &source)	CompBase
SBase::operator=(const SBase &rhs)	SBase
performDeletions()	Submodel	virtual
read(const XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED)	SBase
readAttributes(const XMLAttributes &attributes, const ExpectedAttributes &expectedAttributes, bool hasCompIdName, bool idRequired, CompSBMLErrorCode_t errcode)	CompBase	protectedvirtual
removeDeletion(unsigned int index)	Submodel
removeDeletion(const std::string &sid)	Submodel
removeFromParentAndDelete()	SBase	virtual
removeFromParentAndPorts(SBase *todelete, std::set< SBase * > *removed)	CompBase	protectedstatic
removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true)	SBase
renameMetaIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
renameSIdRefs(const std::string &oldid, const std::string &newid)	Submodel	virtual
renameUnitSIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
replaceElement(SBase *toReplace, SBase *replacement)	Submodel	virtual
replaceTopLevelAnnotationElement(const XMLNode *annotation)	SBase
replaceTopLevelAnnotationElement(const std::string &annotation)	SBase
setAnnotation(const XMLNode *annotation)	SBase	virtual
setAnnotation(const std::string &annotation)	SBase	virtual
setCreatedDate(Date *date)	SBase
setElementText(const std::string &text)	SBase	protectedvirtual
setExtentConversionFactor(const std::string &id)	Submodel	virtual
setId(const std::string &sid)	Submodel	virtual
setIdAttribute(const std::string &sid)	SBase	virtual
setMetaId(const std::string &metaid)	SBase
setModelHistory(ModelHistory *history)	SBase
setModelRef(const std::string &modelRef)	Submodel	virtual
setName(const std::string &name)	Submodel	virtual
setNamespaces(XMLNamespaces *xmlns)	SBase
setNotes(const XMLNode *notes)	SBase
setNotes(const std::string &notes, bool addXHTMLMarkup=false)	SBase
setSBOTerm(int value)	SBase	virtual
setSBOTerm(const std::string &sboid)	SBase	virtual
setSubstanceConversionFactor(const std::string &id)	Submodel	virtual
setTimeConversionFactor(const std::string &id)	Submodel	virtual
setUserData(void *userData)	SBase
Submodel(unsigned int level=CompExtension::getDefaultLevel(), unsigned int version=CompExtension::getDefaultVersion(), unsigned int pkgVersion=CompExtension::getDefaultPackageVersion())	Submodel
Submodel(CompPkgNamespaces *compns)	Submodel
Submodel(const Submodel &source)	Submodel
toSBML()	SBase
toXMLNode()	SBase
unsetAnnotation()	SBase
unsetCreatedDate()	SBase
unsetCVTerms()	SBase
unsetExtentConversionFactor()	Submodel	virtual
unsetId()	Submodel	virtual
unsetIdAttribute()	SBase
unsetMetaId()	SBase
unsetModelHistory()	SBase
unsetModelRef()	Submodel	virtual
unsetModifiedDates()	SBase
unsetName()	Submodel	virtual
unsetNotes()	SBase
unsetSBOTerm()	SBase
unsetSubstanceConversionFactor()	Submodel	virtual
unsetTimeConversionFactor()	Submodel	virtual
unsetUserData()	SBase
writeAttributes(XMLOutputStream &stream) const	CompBase	protectedvirtual
~CompBase()	CompBase	virtual
~SBase()	SBase	virtual
~Submodel()	Submodel	virtual