MathSBML

Model Builder: annotationToSymbolicSBML

annotationToSymbolicSBML[options] returns symbolic SBML for an annotation.

See also:

New in MathSBML version 2.3.0. Heirarchical annotations in version 2.3.29.

Option	Default	Description
namespace	value of most recent call to setAnnotationNamespace	Namespace (URL) to be used in annotation
package	value of most recent call to setAnnotationPackage	Name of package to use in annotation.
xml	(none)	contains symbolic SBML to be placed in the annotation. If not specified, all additional options will be treated as data for the symbolic SBML.

Example


Input:  setAnnotationNamespace["http://www.stuff"]
        setAnnotationPackage["bedrock"]
        annotationToSymbolicSBML[hello -> "goodbye", yes -> no]
Output: XMLElement[annotation,
                  {xmlns:bedrock->http://www.stuff},
                  {XMLElement[hello,{},{goodbye}],
                   XMLElement[yes,{},{no}]
                  }]

Annotations can also be added heirarchically, as in the following example.

Input:  setAnnotationNamespace["http://url"];
        setAnnotationPackage["helloWorld"];
        annotationToSymbolicSBML[
        foo -> {I -> {write->SBML,like -> {apples -> red, bananas -> yellow, cherries -> red}, 
                we -> {livein -> {submarine -> yellow, 
                                  house -> {size -> big, color -> red}}}}}];
Output: 
        XMLElement[
           annotation,
           {xmlns:helloWorld->http://url},
           {XMLElement[foo,{},{
              XMLElement[I, {write->SBML},{XMLElement[like,{apples->red,bananas->yellow,cherries->red},{}]}],
              XMLElement[we,{},{XMLElement[livein,
                                          {submarine->yellow},
                                          {XMLElement[house,{color->red,size->big},{}]}]}]}]}]

[7-23-04]