This page lists published papers and chapters describing SBML, SBML packages, and core SBML-supporting software such as API libraries. Information about associated standards are not included here; please see the COMBINE website and FAIRsharing for information about related standards.
About SBML and SBML packages
The following papers and chapters describe SBML and SBML packages in general terms, and are useful for context and general perspectives about SBML, SBML development, and related COMBINE standards.
<annotation> elements, and for Level 3, it is expected to be turned into a full package, with the same constructs appearing at the top level instead of inside
About software infrastructure
This section is limited to papers authored by SBML Team members specifically about SBML infrastructure software. Many third-party groups have developed other SBML-compatible software, but these are outside of the scope of this list.
SBML specification documents
The SBML Specifications are documents that exist independently of journal publications. Prior to the year 2015, we had difficulty finding an outlet for publishing the specification documents; however, beginning in 2015, the Journal of Integrative Bioinformatics offered to publish annual special issues developed to specifications in the computational biology/bioinformatics area, and thus recent SBML specifications have been published as journal articles.