| addCVTerm(CVTerm *term, bool newBag=false) | SBase | |
| addModifiedDate(Date *date) | SBase | |
| addModifier(const ModifierSpeciesReference *msr) | Reaction | |
| addModifier(const Species *species, const std::string id="") | Reaction | |
| addProduct(const SpeciesReference *sr) | Reaction | |
| addProduct(const Species *species, double stoichiometry=1.0, const std::string id="", bool constant=true) | Reaction | |
| addReactant(const SpeciesReference *sr) | Reaction | |
| addReactant(const Species *species, double stoichiometry=1.0, const std::string id="", bool constant=true) | Reaction | |
| appendAnnotation(const XMLNode *annotation) | SBase | virtual |
| appendAnnotation(const std::string &annotation) | SBase | virtual |
| appendNotes(const XMLNode *notes) | SBase | |
| appendNotes(const std::string ¬es) | SBase | |
| clone() const | IntraSpeciesReaction | virtual |
| createKineticLaw() | Reaction | |
| createModifier() | Reaction | |
| createProduct() | Reaction | |
| createReactant() | Reaction | |
| deleteDisabledPlugins(bool recursive=true) | SBase | |
| disablePackage(const std::string &pkgURI, const std::string &pkgPrefix) | SBase | |
| enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag) | SBase | |
| getAllElements(ElementFilter *filter=NULL) | Reaction | virtual |
| getAllElementsFromPlugins(ElementFilter *filter=NULL) | SBase | virtual |
| getAncestorOfType(int type, const std::string &pkgName="core") | SBase | |
| getAncestorOfType(int type, const std::string pkgName="core") const | SBase | |
| getAnnotation() | SBase | |
| getAnnotation() const | SBase | |
| getAnnotationString() | SBase | |
| getAnnotationString() const | SBase | |
| getColumn() const | SBase | |
| getCompartment() const | Reaction | |
| getCreatedDate() const | SBase | |
| getCreatedDate() | SBase | |
| getCVTerm(unsigned int n) | SBase | |
| getCVTerms() | SBase | |
| getCVTerms() const | SBase | |
| getDisabledPlugin(unsigned int n) | SBase | |
| getDisabledPlugin(unsigned int n) const | SBase | |
| getElementByMetaId(const std::string &metaid) | Reaction | virtual |
| SBase::getElementByMetaId(const std::string &metaid) const | SBase | |
| getElementBySId(const std::string &id) | Reaction | virtual |
| SBase::getElementBySId(const std::string &id) const | SBase | virtual |
| getElementName() const | IntraSpeciesReaction | virtual |
| getFast() const | Reaction | |
| getId() const | Reaction | virtual |
| getIdAttribute() const | SBase | |
| getKineticLaw() const | Reaction | |
| getKineticLaw() | Reaction | |
| getLevel() const | SBase | |
| getLine() const | SBase | |
| getListOfModifiers() const | Reaction | |
| getListOfModifiers() | Reaction | |
| getListOfProducts() const | Reaction | |
| getListOfProducts() | Reaction | |
| getListOfReactants() const | Reaction | |
| getListOfReactants() | Reaction | |
| getMetaId() const | SBase | |
| getMetaId() | SBase | |
| getModel() const | SBase | |
| getModelHistory() const | SBase | |
| getModelHistory() | SBase | |
| getModifiedDate(unsigned int n) | SBase | |
| getModifier(unsigned int n) const | Reaction | |
| getModifier(unsigned int n) | Reaction | |
| getModifier(const std::string &species) const | Reaction | |
| getModifier(const std::string &species) | Reaction | |
| getName() const | Reaction | virtual |
| getNamespaces() const | SBase | virtual |
| getNotes() | SBase | |
| getNotes() const | SBase | |
| getNotesString() | SBase | |
| getNotesString() const | SBase | |
| getNumCVTerms() const | SBase | |
| getNumDisabledPlugins() const | SBase | |
| getNumModifiedDates() | SBase | |
| getNumModifiers() const | Reaction | |
| getNumPlugins() const | SBase | |
| getNumProducts() const | Reaction | |
| getNumReactants() const | Reaction | |
| getPackageCoreVersion() const | SBase | |
| getPackageName() const | SBase | |
| getPackageVersion() const | SBase | |
| getParentSBMLObject() | SBase | |
| getParentSBMLObject() const | SBase | |
| getPlugin(const std::string &package) | SBase | |
| getPlugin(const std::string &package) const | SBase | |
| getPlugin(unsigned int n) | SBase | |
| getPlugin(unsigned int n) const | SBase | |
| getPrefix() const | SBase | |
| getProduct(unsigned int n) const | Reaction | |
| getProduct(unsigned int n) | Reaction | |
| getProduct(const std::string &species) const | Reaction | |
| getProduct(const std::string &species) | Reaction | |
| getReactant(unsigned int n) const | Reaction | |
| getReactant(unsigned int n) | Reaction | |
| getReactant(const std::string &species) const | Reaction | |
| getReactant(const std::string &species) | Reaction | |
| getResourceBiologicalQualifier(std::string resource) const | SBase | |
| getResourceModelQualifier(std::string resource) const | SBase | |
| getReversible() const | Reaction | |
| getSBMLDocument() const | SBase | |
| getSBMLDocument() | SBase | |
| getSBOTerm() const | SBase | |
| getSBOTermAsURL() const | SBase | |
| getSBOTermID() const | SBase | |
| getTypeCode() const | IntraSpeciesReaction | virtual |
| getURI() const | SBase | |
| getUserData() const | SBase | |
| getVersion() const | SBase | |
| hasRequiredAttributes() const | IntraSpeciesReaction | virtual |
| hasValidLevelVersionNamespaceCombination() | SBase | |
| initDefaults() | Reaction | |
| IntraSpeciesReaction(unsigned int level=MultiExtension::getDefaultLevel(), unsigned int version=MultiExtension::getDefaultVersion(), unsigned int pkgVersion=MultiExtension::getDefaultPackageVersion()) | IntraSpeciesReaction | |
| IntraSpeciesReaction(MultiPkgNamespaces *multins) | IntraSpeciesReaction | |
| IntraSpeciesReaction(const IntraSpeciesReaction &orig) | IntraSpeciesReaction | |
| isPackageEnabled(const std::string &pkgName) const | SBase | |
| isPackageURIEnabled(const std::string &pkgURI) const | SBase | |
| isPkgEnabled(const std::string &pkgName) const | SBase | |
| isPkgURIEnabled(const std::string &pkgURI) const | SBase | |
| isSetAnnotation() const | SBase | |
| isSetCompartment() const | Reaction | |
| isSetCreatedDate() const | SBase | |
| isSetFast() const | Reaction | |
| isSetId() const | Reaction | virtual |
| isSetIdAttribute() const | SBase | |
| isSetKineticLaw() const | Reaction | |
| isSetMetaId() const | SBase | |
| isSetModelHistory() const | SBase | |
| isSetModifiedDate() const | SBase | |
| isSetName() const | Reaction | virtual |
| isSetNotes() const | SBase | |
| isSetReversible() const | Reaction | |
| isSetSBOTerm() const | SBase | |
| isSetUserData() const | SBase | |
| matchesRequiredSBMLNamespacesForAddition(const SBase *sb) | SBase | |
| matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const | SBase | |
| matchesSBMLNamespaces(const SBase *sb) | SBase | |
| matchesSBMLNamespaces(const SBase *sb) const | SBase | |
| operator=(const IntraSpeciesReaction &rhs) | IntraSpeciesReaction | |
| Reaction::operator=(const Reaction &rhs) | Reaction | |
| SBase::operator=(const SBase &rhs) | SBase | |
| Reaction(unsigned int level, unsigned int version) | Reaction | |
| Reaction(SBMLNamespaces *sbmlns) | Reaction | |
| Reaction(const Reaction &orig) | Reaction | |
| read(const XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED) | SBase | |
| removeFromParentAndDelete() | SBase | virtual |
| removeModifier(unsigned int n) | Reaction | |
| removeModifier(const std::string &species) | Reaction | |
| removeProduct(unsigned int n) | Reaction | |
| removeProduct(const std::string &species) | Reaction | |
| removeReactant(unsigned int n) | Reaction | |
| removeReactant(const std::string &species) | Reaction | |
| removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true) | SBase | |
| renameMetaIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
| renameSIdRefs(const std::string &oldid, const std::string &newid) | Reaction | virtual |
| renameUnitSIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
| replaceTopLevelAnnotationElement(const XMLNode *annotation) | SBase | |
| replaceTopLevelAnnotationElement(const std::string &annotation) | SBase | |
| setAnnotation(const XMLNode *annotation) | SBase | virtual |
| setAnnotation(const std::string &annotation) | SBase | virtual |
| setCompartment(const std::string &sid) | Reaction | |
| setCreatedDate(Date *date) | SBase | |
| setElementText(const std::string &text) | SBase | protectedvirtual |
| setFast(bool value) | Reaction | |
| setId(const std::string &sid) | Reaction | virtual |
| setIdAttribute(const std::string &sid) | SBase | virtual |
| setKineticLaw(const KineticLaw *kl) | Reaction | |
| setMetaId(const std::string &metaid) | SBase | |
| setModelHistory(ModelHistory *history) | SBase | |
| setName(const std::string &name) | Reaction | virtual |
| setNamespaces(XMLNamespaces *xmlns) | SBase | |
| setNotes(const XMLNode *notes) | SBase | |
| setNotes(const std::string ¬es, bool addXHTMLMarkup=false) | SBase | |
| setReversible(bool value) | Reaction | |
| setSBOTerm(int value) | SBase | virtual |
| setSBOTerm(const std::string &sboid) | SBase | virtual |
| setUserData(void *userData) | SBase | |
| toSBML() | SBase | |
| toXMLNode() | SBase | |
| unsetAnnotation() | SBase | |
| unsetCompartment() | Reaction | |
| unsetCreatedDate() | SBase | |
| unsetCVTerms() | SBase | |
| unsetFast() | Reaction | |
| unsetId() | SBase | virtual |
| unsetIdAttribute() | SBase | |
| unsetKineticLaw() | Reaction | |
| unsetMetaId() | SBase | |
| unsetModelHistory() | SBase | |
| unsetModifiedDates() | SBase | |
| unsetName() | Reaction | virtual |
| unsetNotes() | SBase | |
| unsetReversible() | Reaction | |
| unsetSBOTerm() | SBase | |
| unsetUserData() | SBase | |
| ~IntraSpeciesReaction() | IntraSpeciesReaction | virtual |
| ~Reaction() | Reaction | virtual |
| ~SBase() | SBase | virtual |