SBMLDocument Member List

This is the complete list of members for SBMLDocument, including all inherited members.

addCVTerm(CVTerm *term, bool newBag=false)	SBase
addModifiedDate(Date *date)	SBase
appendAnnotation(const XMLNode *annotation)	SBase	virtual
appendAnnotation(const std::string &annotation)	SBase	virtual
appendNotes(const XMLNode *notes)	SBase
appendNotes(const std::string &notes)	SBase
checkConsistency()	SBMLDocument
checkConsistencyWithStrictUnits()	SBMLDocument
checkConsistencyWithStrictUnits(XMLErrorSeverityOverride_t strictErrorOverride)	SBMLDocument
checkInternalConsistency()	SBMLDocument
checkL1Compatibility(bool inConversion=false)	SBMLDocument
checkL2v1Compatibility(bool inConversion=false)	SBMLDocument
checkL2v2Compatibility(bool inConversion=false)	SBMLDocument
checkL2v3Compatibility(bool inConversion=false)	SBMLDocument
checkL2v4Compatibility()	SBMLDocument
checkL2v5Compatibility()	SBMLDocument
checkL3v1Compatibility()	SBMLDocument
checkL3v2Compatibility()	SBMLDocument
clone() const	SBMLDocument	virtual
convert(const ConversionProperties &props)	SBMLDocument	virtual
createModel(const std::string sid="")	SBMLDocument
deleteDisabledPlugins(bool recursive=true)	SBase
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix)	SBase
enableDefaultNS(const std::string &package, bool flag)	SBMLDocument
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag)	SBase
expandFunctionDefinitions()	SBMLDocument
expandInitialAssignments()	SBMLDocument
getAllElements(ElementFilter *filter=NULL)	SBMLDocument	virtual
getAllElementsFromPlugins(ElementFilter *filter=NULL)	SBase	virtual
getAncestorOfType(int type, const std::string &pkgName="core")	SBase
getAncestorOfType(int type, const std::string pkgName="core") const	SBase
getAnnotation()	SBase
getAnnotation() const	SBase
getAnnotationString()	SBase
getAnnotationString() const	SBase
getColumn() const	SBase
getCreatedDate() const	SBase
getCreatedDate()	SBase
getCVTerm(unsigned int n)	SBase
getCVTerms()	SBase
getCVTerms() const	SBase
getDefaultLevel()	SBMLDocument	static
getDefaultVersion()	SBMLDocument	static
getDisabledPlugin(unsigned int n)	SBase
getDisabledPlugin(unsigned int n) const	SBase
getElementByMetaId(const std::string &metaid)	SBMLDocument	virtual
SBase::getElementByMetaId(const std::string &metaid) const	SBase
getElementBySId(const std::string &id)	SBMLDocument	virtual
SBase::getElementBySId(const std::string &id) const	SBase	virtual
getElementName() const	SBMLDocument	virtual
getError(unsigned int n) const	SBMLDocument
getErrorLog()	SBMLDocument
getErrorLog() const	SBMLDocument
getErrorWithSeverity(unsigned int n, unsigned int severity) const	SBMLDocument
getId() const	SBase	virtual
getIdAttribute() const	SBase
getLevel() const	SBase
getLine() const	SBase
getLocationURI() const	SBMLDocument
getLocationURI()	SBMLDocument
getMetaId() const	SBase
getMetaId()	SBase
getModel() const	SBMLDocument
getModel()	SBMLDocument
getModelHistory() const	SBase
getModelHistory()	SBase
getModifiedDate(unsigned int n)	SBase
getName() const	SBase	virtual
getNamespaces() const	SBMLDocument	virtual
getNotes()	SBase
getNotes() const	SBase
getNotesString()	SBase
getNotesString() const	SBase
getNumCVTerms() const	SBase
getNumDisabledPlugins() const	SBase
getNumErrors() const	SBMLDocument
getNumErrors(unsigned int severity) const	SBMLDocument
getNumModifiedDates()	SBase
getNumPlugins() const	SBase
getPackageCoreVersion() const	SBase
getPackageName() const	SBase
getPackageRequired(const std::string &package)	SBMLDocument
getPackageVersion() const	SBase
getParentSBMLObject()	SBase
getParentSBMLObject() const	SBase
getPkgRequired(const std::string &package)	SBMLDocument
getPlugin(const std::string &package)	SBase
getPlugin(const std::string &package) const	SBase
getPlugin(unsigned int n)	SBase
getPlugin(unsigned int n) const	SBase
getPrefix() const	SBase
getResourceBiologicalQualifier(std::string resource) const	SBase
getResourceModelQualifier(std::string resource) const	SBase
getSBMLDocument() const	SBase
getSBMLDocument()	SBase
getSBOTerm() const	SBase
getSBOTermAsURL() const	SBase
getSBOTermID() const	SBase
getTypeCode() const	SBMLDocument	virtual
getURI() const	SBase
getUserData() const	SBase
getVersion() const	SBase
hasValidLevelVersionNamespaceCombination()	SBase
isDisabledIgnoredPackage(const std::string &pkgURI) const	SBMLDocument
isEnabledDefaultNS(const std::string &package)	SBMLDocument
isIgnoredPackage(const std::string &pkgURI)	SBMLDocument
isIgnoredPkg(const std::string &pkgURI)	SBMLDocument
isPackageEnabled(const std::string &pkgName) const	SBase
isPackageURIEnabled(const std::string &pkgURI) const	SBase
isPkgEnabled(const std::string &pkgName) const	SBase
isPkgURIEnabled(const std::string &pkgURI) const	SBase
isSetAnnotation() const	SBase
isSetCreatedDate() const	SBase
isSetId() const	SBase	virtual
isSetIdAttribute() const	SBase
isSetMetaId() const	SBase
isSetModel() const	SBMLDocument
isSetModelHistory() const	SBase
isSetModifiedDate() const	SBase
isSetName() const	SBase	virtual
isSetNotes() const	SBase
isSetPackageRequired(const std::string &package)	SBMLDocument
isSetPkgRequired(const std::string &package)	SBMLDocument
isSetSBOTerm() const	SBase
isSetUserData() const	SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb)	SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const	SBase
matchesSBMLNamespaces(const SBase *sb)	SBase
matchesSBMLNamespaces(const SBase *sb) const	SBase
operator=(const SBMLDocument &rhs)	SBMLDocument
SBase::operator=(const SBase &rhs)	SBase
printErrors(std::ostream &stream=std::cerr) const	SBMLDocument
printErrors(std::ostream &stream, unsigned int severity) const	SBMLDocument
read(const XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED)	SBase
removeFromParentAndDelete()	SBase	virtual
removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true)	SBase
renameMetaIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
renameSIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
renameUnitSIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
replaceTopLevelAnnotationElement(const XMLNode *annotation)	SBase
replaceTopLevelAnnotationElement(const std::string &annotation)	SBase
SBMLDocument(unsigned int level=0, unsigned int version=0)	SBMLDocument
SBMLDocument(SBMLNamespaces *sbmlns)	SBMLDocument
SBMLDocument(const SBMLDocument &orig)	SBMLDocument
setAnnotation(const XMLNode *annotation)	SBase	virtual
setAnnotation(const std::string &annotation)	SBase	virtual
setConsistencyChecks(SBMLErrorCategory_t category, bool apply)	SBMLDocument
setConsistencyChecksForConversion(SBMLErrorCategory_t category, bool apply)	SBMLDocument
setCreatedDate(Date *date)	SBase
setElementText(const std::string &text)	SBase	protectedvirtual
setId(const std::string &sid)	SBase	virtual
setIdAttribute(const std::string &sid)	SBase	virtual
setLevelAndVersion(unsigned int level, unsigned int version, bool strict=true, bool ignorePackages=false)	SBMLDocument
setLocationURI(const std::string &uri)	SBMLDocument
setMetaId(const std::string &metaid)	SBase
setModel(const Model *m)	SBMLDocument
setModelHistory(ModelHistory *history)	SBase
setName(const std::string &name)	SBase	virtual
setNamespaces(XMLNamespaces *xmlns)	SBase
setNotes(const XMLNode *notes)	SBase
setNotes(const std::string &notes, bool addXHTMLMarkup=false)	SBase
setPackageRequired(const std::string &package, bool flag)	SBMLDocument
setPkgRequired(const std::string &package, bool flag)	SBMLDocument
setSBOTerm(int value)	SBase	virtual
setSBOTerm(const std::string &sboid)	SBase	virtual
setUserData(void *userData)	SBase
toSBML()	SBase
toXMLNode()	SBase
unsetAnnotation()	SBase
unsetCreatedDate()	SBase
unsetCVTerms()	SBase
unsetId()	SBase	virtual
unsetIdAttribute()	SBase
unsetMetaId()	SBase
unsetModelHistory()	SBase
unsetModifiedDates()	SBase
unsetName()	SBase	virtual
unsetNotes()	SBase
unsetSBOTerm()	SBase
unsetUserData()	SBase
validateSBML()	SBMLDocument
~SBase()	SBase	virtual
~SBMLDocument()	SBMLDocument	virtual