libSBML C++ API  5.20.4
Species Member List

This is the complete list of members for Species, including all inherited members.

addCVTerm(CVTerm *term, bool newBag=false)SBase
addModifiedDate(Date *date)SBase
appendAnnotation(const XMLNode *annotation)SBasevirtual
appendAnnotation(const std::string &annotation)SBasevirtual
appendNotes(const XMLNode *notes)SBase
appendNotes(const std::string &notes)SBase
clone() constSpeciesvirtual
deleteDisabledPlugins(bool recursive=true)SBase
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix)SBase
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag)SBase
getAllElements(ElementFilter *filter=NULL)SBasevirtual
getAllElementsFromPlugins(ElementFilter *filter=NULL)SBasevirtual
getAncestorOfType(int type, const std::string &pkgName="core")SBase
getAncestorOfType(int type, const std::string pkgName="core") constSBase
getAnnotation()SBase
getAnnotation() constSBase
getAnnotationString()SBase
getAnnotationString() constSBase
getBoundaryCondition() constSpecies
getCharge() constSpecies
getColumn() constSBase
getCompartment() constSpecies
getConstant() constSpecies
getConversionFactor() constSpecies
getCreatedDate() constSBase
getCreatedDate()SBase
getCVTerm(unsigned int n)SBase
getCVTerms()SBase
getCVTerms() constSBase
getDerivedUnitDefinition()Species
getDerivedUnitDefinition() constSpecies
getDisabledPlugin(unsigned int n)SBase
getDisabledPlugin(unsigned int n) constSBase
getElementByMetaId(const std::string &metaid)SBasevirtual
getElementByMetaId(const std::string &metaid) constSBase
getElementBySId(const std::string &id)SBasevirtual
getElementBySId(const std::string &id) constSBasevirtual
getElementName() constSpeciesvirtual
getHasOnlySubstanceUnits() constSpecies
getId() constSpeciesvirtual
getIdAttribute() constSBase
getInitialAmount() constSpecies
getInitialConcentration() constSpecies
getLevel() constSBase
getLine() constSBase
getMetaId() constSBase
getMetaId()SBase
getModel() constSBase
getModelHistory() constSBase
getModelHistory()SBase
getModifiedDate(unsigned int n)SBase
getName() constSpeciesvirtual
getNamespaces() constSBasevirtual
getNotes()SBase
getNotes() constSBase
getNotesString()SBase
getNotesString() constSBase
getNumCVTerms() constSBase
getNumDisabledPlugins() constSBase
getNumModifiedDates()SBase
getNumPlugins() constSBase
getPackageCoreVersion() constSBase
getPackageName() constSBase
getPackageVersion() constSBase
getParentSBMLObject()SBase
getParentSBMLObject() constSBase
getPlugin(const std::string &package)SBase
getPlugin(const std::string &package) constSBase
getPlugin(unsigned int n)SBase
getPlugin(unsigned int n) constSBase
getPrefix() constSBase
getResourceBiologicalQualifier(std::string resource) constSBase
getResourceModelQualifier(std::string resource) constSBase
getSBMLDocument() constSBase
getSBMLDocument()SBase
getSBOTerm() constSBase
getSBOTermAsURL() constSBase
getSBOTermID() constSBase
getSpatialSizeUnits() constSpecies
getSpeciesType() constSpecies
getSubstanceUnits() constSpecies
getTypeCode() constSpeciesvirtual
getUnits() constSpecies
getURI() constSBase
getUserData() constSBase
getVersion() constSBase
hasRequiredAttributes() constSpeciesvirtual
hasValidLevelVersionNamespaceCombination()SBase
initDefaults()Species
isPackageEnabled(const std::string &pkgName) constSBase
isPackageURIEnabled(const std::string &pkgURI) constSBase
isPkgEnabled(const std::string &pkgName) constSBase
isPkgURIEnabled(const std::string &pkgURI) constSBase
isSetAnnotation() constSBase
isSetBoundaryCondition() constSpecies
isSetCharge() constSpecies
isSetCompartment() constSpecies
isSetConstant() constSpecies
isSetConversionFactor() constSpecies
isSetCreatedDate() constSBase
isSetHasOnlySubstanceUnits() constSpecies
isSetId() constSpeciesvirtual
isSetIdAttribute() constSBase
isSetInitialAmount() constSpecies
isSetInitialConcentration() constSpecies
isSetMetaId() constSBase
isSetModelHistory() constSBase
isSetModifiedDate() constSBase
isSetName() constSpeciesvirtual
isSetNotes() constSBase
isSetSBOTerm() constSBase
isSetSpatialSizeUnits() constSpecies
isSetSpeciesType() constSpecies
isSetSubstanceUnits() constSpecies
isSetUnits() constSpecies
isSetUserData() constSBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb)SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) constSBase
matchesSBMLNamespaces(const SBase *sb)SBase
matchesSBMLNamespaces(const SBase *sb) constSBase
operator=(const Species &rhs)Species
SBase::operator=(const SBase &rhs)SBase
read(const XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED)SBase
removeFromParentAndDelete()SBasevirtual
removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true)SBase
renameMetaIdRefs(const std::string &oldid, const std::string &newid)SBasevirtual
renameSIdRefs(const std::string &oldid, const std::string &newid)Speciesvirtual
renameUnitSIdRefs(const std::string &oldid, const std::string &newid)Speciesvirtual
replaceTopLevelAnnotationElement(const XMLNode *annotation)SBase
replaceTopLevelAnnotationElement(const std::string &annotation)SBase
setAnnotation(const XMLNode *annotation)SBasevirtual
setAnnotation(const std::string &annotation)SBasevirtual
setBoundaryCondition(bool value)Species
setCharge(int value)Species
setCompartment(const std::string &sid)Species
setConstant(bool value)Species
setConversionFactor(const std::string &sid)Species
setCreatedDate(Date *date)SBase
setElementText(const std::string &text)SBaseprotectedvirtual
setHasOnlySubstanceUnits(bool value)Species
setId(const std::string &sid)Speciesvirtual
setIdAttribute(const std::string &sid)SBasevirtual
setInitialAmount(double value)Species
setInitialConcentration(double value)Species
setMetaId(const std::string &metaid)SBase
setModelHistory(ModelHistory *history)SBase
setName(const std::string &name)Speciesvirtual
setNamespaces(XMLNamespaces *xmlns)SBase
setNotes(const XMLNode *notes)SBase
setNotes(const std::string &notes, bool addXHTMLMarkup=false)SBase
setSBOTerm(int value)SBasevirtual
setSBOTerm(const std::string &sboid)SBasevirtual
setSpatialSizeUnits(const std::string &sid)Species
setSpeciesType(const std::string &sid)Species
setSubstanceUnits(const std::string &sid)Species
setUnits(const std::string &sname)Species
setUserData(void *userData)SBase
Species(unsigned int level, unsigned int version)Species
Species(SBMLNamespaces *sbmlns)Species
Species(const Species &orig)Species
toSBML()SBase
toXMLNode()SBase
unsetAnnotation()SBase
unsetBoundaryCondition()Species
unsetCharge()Species
unsetCompartment()Species
unsetConstant()Species
unsetConversionFactor()Species
unsetCreatedDate()SBase
unsetCVTerms()SBase
unsetHasOnlySubstanceUnits()Species
unsetId()SBasevirtual
unsetIdAttribute()SBase
unsetInitialAmount()Species
unsetInitialConcentration()Species
unsetMetaId()SBase
unsetModelHistory()SBase
unsetModifiedDates()SBase
unsetName()Speciesvirtual
unsetNotes()SBase
unsetSBOTerm()SBase
unsetSpatialSizeUnits()Species
unsetSpeciesType()Species
unsetSubstanceUnits()Species
unsetUnits()Species
unsetUserData()SBase
~SBase()SBasevirtual
~Species()Speciesvirtual