- r -

• RadialGradient() : RadialGradient
• RateRule() : RateRule
• Reaction() : Reaction
• ReactionGlyph() : ReactionGlyph
• read() : SBase
• readAttributes() : CompBase
• readInto() : XMLAttributes
• readSBML() : SBMLReader
• readSBMLFromFile() : SBMLReader
• readSBMLFromString() : SBMLReader
• readXMLNodeFromFile() : XMLNode
• Rectangle() : Rectangle
• reduceToBinary() : ASTNode
• refactor() : ASTNode
• refactorNumbers() : ASTNode
• ReferenceGlyph() : ReferenceGlyph
• RelAbsVector() : RelAbsVector
• relativeTo() : SBMLUri
• remove() : List , ListOf , ListOfAdjacentDomains , ListOfAnalyticVolumes , ListOfColorDefinitions , ListOfCompartmentGlyphs , ListOfCompartmentReferences , ListOfCompartments , ListOfCompartmentTypes , ListOfConstraints , ListOfCoordinateComponents , ListOfCSGNodes , ListOfCSGObjects , ListOfCurveElements , ListOfDeletions , ListOfDomains , ListOfDomainTypes , ListOfDrawables , ListOfEventAssignments , ListOfEvents , ListOfExternalModelDefinitions , ListOfFbcAssociations , ListOfFluxBounds , ListOfFluxObjectives , ListOfFunctionDefinitions , ListOfFunctionTerms , ListOfGeneAssociations , ListOfGeneProducts , ListOfGeometryDefinitions , ListOfGlobalRenderInformation , ListOfGlobalStyles , ListOfGradientDefinitions , ListOfGradientStops , ListOfGraphicalObjects , ListOfGroups , ListOfInitialAssignments , ListOfInputs , ListOfInSpeciesTypeBonds , ListOfInteriorPoints , ListOfKeyValuePairs , ListOfLayouts , ListOfLineEndings , ListOfLineSegments , ListOfLocalParameters , ListOfLocalRenderInformation , ListOfLocalStyles , ListOfMembers , ListOfModelDefinitions , ListOfMultiSpeciesTypes , ListOfObjectives , ListOfOrdinalMappings , ListOfOutputs , ListOfOutwardBindingSites , ListOfParameters , ListOfParametricObjects , ListOfPorts , ListOfPossibleSpeciesFeatureValues , ListOfQualitativeSpecies , ListOfReactionGlyphs , ListOfReactions , ListOfReferenceGlyphs , ListOfReplacedElements , ListOfRules , ListOfSampledFields , ListOfSampledVolumes , ListOfSpecies , ListOfSpeciesFeatures , ListOfSpeciesFeatureTypes , ListOfSpeciesFeatureValues , ListOfSpeciesGlyphs , ListOfSpeciesReferenceGlyphs , ListOfSpeciesReferences , ListOfSpeciesTypeComponentIndexes , ListOfSpeciesTypeComponentMapInProducts , ListOfSpeciesTypeInstances , ListOfSpeciesTypes , ListOfSubmodels , ListOfTextGlyphs , ListOfTransitions , ListOfUncertainties , ListOfUncertParameters , ListOfUnitDefinitions , ListOfUnits , ListOfUserDefinedConstraintComponents , ListOfUserDefinedConstraints , SBMLErrorLog , SubListOfSpeciesFeatures , XMLAttributes , XMLNamespaces
• removeAdditionalGraphicalObject() : Layout
• removeAdjacentDomains() : Geometry
• removeAll() : SBMLErrorLog
• removeAnalyticVolume() : AnalyticGeometry
• removeAssociation() : Association , FbcAnd , FbcOr
• removeAttr() : XMLToken
• removeCallback() : CallbackRegistry
• removeChild() : ASTNode , XMLNode
• removeChildren() : XMLNode
• removeColorDefinition() : RenderInformationBase
• removeCompartment() : Model
• removeCompartmentGlyph() : Layout
• removeCompartmentReference() : MultiCompartmentPlugin
• removeCompartmentType() : Model
• removeConstraint() : Model
• removeCoordinateComponent() : Geometry
• removeCSGNode() : CSGSetOperator
• removeCSGObject() : CSGeometry
• removeDash() : GraphicalPrimitive1D
• removeDeletion() : Submodel
• removeDomain() : Geometry
• removeDomainType() : Geometry
• removeElement() : Polygon , RenderCurve , RenderGroup
• removeEvent() : Model
• removeEventAssignment() : Event
• removeExternalModelDefinition() : CompSBMLDocumentPlugin
• removeFluxBound() : FbcModelPlugin
• removeFluxObjective() : Objective
• removeFromParentAndDelete() : Delay , KineticLaw , ListOf , Model , ModelDefinition , Priority , ReplacedBy , SBase , SBaseRef , StoichiometryMath , Trigger
• removeFromParentAndPorts() : CompBase
• removeFunctionDefinition() : Model
• removeFunctionTerm() : Transition
• removeGeneAssociation() : FbcModelPlugin
• removeGeneProduct() : FbcModelPlugin
• removeGeometryDefinition() : Geometry , MixedGeometry
• removeGlobalRenderInformation() : RenderListOfLayoutsPlugin
• removeGlobalStyle() : GlobalRenderInformation
• removeGradientDefinition() : RenderInformationBase
• removeGradientStop() : GradientBase
• removeGroup() : GroupsModelPlugin
• removeId() : LocalStyle
• removeInitialAssignment() : Model
• removeInput() : Transition
• removeInSpeciesTypeBond() : MultiSpeciesType
• removeInteriorPoint() : Domain
• removeKeyValuePair() : FbcSBasePlugin
• removeL2Namespaces() : LayoutExtension , RenderExtension , SBMLExtension , SBMLExtensionRegistry
• removeLayout() : LayoutModelPlugin
• removeLineEnding() : RenderInformationBase
• removeLocalParameter() : KineticLaw
• removeLocalRenderInformation() : RenderLayoutPlugin
• removeLocalStyle() : LocalRenderInformation
• removeMember() : Group
• removeModelDefinition() : CompSBMLDocumentPlugin
• removeModifier() : Reaction
• removeMultiSpeciesType() : MultiModelPlugin
• removeNamespace() : SBMLNamespaces , XMLToken
• removeNestedCVTerm() : CVTerm
• removeObjective() : FbcModelPlugin
• removeOption() : ConversionProperties
• removeOrdinalMapping() : MixedGeometry
• removeOutput() : Transition
• removeOutwardBindingSite() : MultiSpeciesPlugin
• removePackageNamespace() : SBMLNamespaces
• removeParameter() : KineticLaw , Model
• removeParametricObject() : ParametricGeometry
• removePort() : CompModelPlugin
• removePossibleSpeciesFeatureValue() : SpeciesFeatureType
• removeProduct() : Reaction
• removeQualitativeSpecies() : QualModelPlugin
• removeReactant() : Reaction
• removeReaction() : Model
• removeReactionGlyph() : Layout
• removeReferenceGlyph() : GeneralGlyph
• removeReplacedElement() : CompSBasePlugin
• removeResolver() : SBMLResolverRegistry
• removeResource() : CVTerm
• removeRole() : Style
• removeRule() : Model
• removeRuleByVariable() : Model
• removeSampledField() : Geometry
• removeSampledVolume() : SampledFieldGeometry
• removeScale() : Unit
• removeSpecies() : Model
• removeSpeciesFeature() : MultiSpeciesPlugin
• removeSpeciesFeatureType() : MultiSpeciesType
• removeSpeciesFeatureValue() : SpeciesFeature
• removeSpeciesGlyph() : Layout
• removeSpeciesReferenceGlyph() : Layout , ReactionGlyph
• removeSpeciesType() : Model
• removeSpeciesTypeComponentIndex() : MultiSpeciesType
• removeSpeciesTypeComponentMapInProduct() : MultiSpeciesReferencePlugin
• removeSpeciesTypeInstance() : MultiSpeciesType
• removeStyle() : GlobalRenderInformation , LocalRenderInformation
• removeSubGlyph() : GeneralGlyph
• removeSubListOfSpeciesFeatures() : ListOfSpeciesFeatures
• removeSubmodel() : CompModelPlugin
• removeTextGlyph() : Layout
• removeTopLevelAnnotationElement() : SBase
• removeTransition() : QualModelPlugin
• removeType() : Style
• removeUncertainty() : DistribSBasePlugin
• removeUncertParameter() : Uncertainty , UncertParameter
• removeUnit() : UnitDefinition
• removeUnitDefinition() : Model
• removeUserDefinedConstraint() : FbcModelPlugin
• removeUserDefinedConstraintComponent() : UserDefinedConstraint
• renameAllIDsAndPrepend() : CompModelPlugin
• renameMetaIdRefs() : GraphicalObject , Port , SBase , SBasePlugin
• renameSIdRefs() : AdjacentDomains , AdvectionCoefficient , AnalyticVolume , AssignmentRule , ASTNode , BoundaryCondition , Compartment , CompartmentGlyph , CompartmentMapping , CompartmentReference , Constraint , CoordinateComponent , CSGObject , CSGSetOperator , DefaultValues , Delay , DiffusionCoefficient , Domain , EventAssignment , FbcReactionPlugin , FluxBound , FluxObjective , FunctionTerm , GeneProduct , GeneProductRef , GeneralGlyph , InitialAssignment , Input , InSpeciesTypeBond , KineticLaw , ListOfObjectives , Member , Model , MultiASTPlugin , MultiSpeciesType , OrdinalMapping , Output , OutwardBindingSite , ParametricObject , Port , PossibleSpeciesFeatureValue , Priority , QualitativeSpecies , RateRule , Reaction , ReactionGlyph , ReferenceGlyph , RenderCurve , RenderGroup , RenderInformationBase , ReplacedElement , Replacing , Rule , SampledFieldGeometry , SampledVolume , SBase , SBasePlugin , SBaseRef , SimpleSpeciesReference , SpatialSymbolReference , Species , SpeciesFeature , SpeciesFeatureValue , SpeciesGlyph , SpeciesReferenceGlyph , SpeciesTypeComponentIndex , SpeciesTypeComponentMapInProduct , SpeciesTypeInstance , StoichiometryMath , Submodel , TextGlyph , Trigger , UncertParameter , UncertSpan , UserDefinedConstraint , UserDefinedConstraintComponent
• renameUnitSIdRefs() : ASTNode , Compartment , Constraint , Delay , EventAssignment , FunctionDefinition , InitialAssignment , KineticLaw , Model , Parameter , Port , Priority , Rule , SBase , SBasePlugin , Species , StoichiometryMath , Trigger , UncertParameter
• RenderCubicBezier() : RenderCubicBezier
• RenderCurve() : RenderCurve
• RenderExtension() : RenderExtension
• RenderGraphicalObjectPlugin() : RenderGraphicalObjectPlugin
• RenderGroup() : RenderGroup
• RenderInformationBase() : RenderInformationBase
• RenderLayoutConverter() : RenderLayoutConverter
• RenderLayoutPlugin() : RenderLayoutPlugin
• RenderListOfLayoutsPlugin() : RenderListOfLayoutsPlugin
• RenderPoint() : RenderPoint
• RenderSBMLDocumentPlugin() : RenderSBMLDocumentPlugin
• RenderValidator() : RenderValidator
• reorder() : UnitDefinition
• reorderArguments() : ASTNode
• replaceArgument() : ASTNode
• replaceArguments() : ASTNode
• replaceChild() : ASTNode
• ReplacedBy() : ReplacedBy
• ReplacedElement() : ReplacedElement
• replaceElement() : Submodel
• replaceReactions() : SBMLReactionConverter
• replaceTopLevelAnnotationElement() : SBase
• Replacing() : Replacing
• representsValidDate() : Date
• resetElementNamespace() : ListOfLayouts
• resolve() : SBMLFileResolver , SBMLResolver , SBMLResolverRegistry
• resolveUri() : SBMLFileResolver , SBMLResolver , SBMLResolverRegistry
• returnsBoolean() : ASTNode
• Rule() : Rule