readSBML.cpp

A simple command-line program that reads an SBML file and prints some statistics about it.

/**
 * @file    readSBML.cpp
 * @brief   Similar to validateSBML, but without the validation
 * @author  Sarah Keating
 * @author  Ben Bornstein
 *
 * <!--------------------------------------------------------------------------
 * This sample program is distributed under a different license than the rest
 * of libSBML.  This program uses the open-source MIT license, as follows:
 *
 * Copyright (c) 2013-2018 by the California Institute of Technology
 * (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
 * and the University of Heidelberg (Germany), with support from the National
 * Institutes of Health (USA) under grant R01GM070923.  All rights reserved.
 *
 * Permission is hereby granted, free of charge, to any person obtaining a
 * copy of this software and associated documentation files (the "Software"),
 * to deal in the Software without restriction, including without limitation
 * the rights to use, copy, modify, merge, publish, distribute, sublicense,
 * and/or sell copies of the Software, and to permit persons to whom the
 * Software is furnished to do so, subject to the following conditions:
 *
 * The above copyright notice and this permission notice shall be included in
 * all copies or substantial portions of the Software.
 *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
 * THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
 * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
 * DEALINGS IN THE SOFTWARE.
 *
 * Neither the name of the California Institute of Technology (Caltech), nor
 * of the European Bioinformatics Institute (EMBL-EBI), nor of the University
 * of Heidelberg, nor the names of any contributors, may be used to endorse
 * or promote products derived from this software without specific prior
 * written permission.
 * ------------------------------------------------------------------------ -->
 */
 
 
#include <iostream>
 
#include <sbml/SBMLTypes.h>
#include <sbml/common/extern.h>
#include "util.h"
 
 
using namespace std;
LIBSBML_CPP_NAMESPACE_USE
 
BEGIN_C_DECLS
 
int
main (int argc, char* argv[])
{
  if (argc != 2)
  {
    cout << endl << "Usage: readSBML filename" << endl << endl;
    return 1;
  }
 
  const char* filename   = argv[1];
  SBMLDocument* document;
  SBMLReader reader;
#ifdef __BORLANDC__
  unsigned long start, stop;
#else
  unsigned long long start, stop;
#endif
 
  start    = getCurrentMillis();
  document = reader.readSBML(filename);
  stop     = getCurrentMillis();
 
  unsigned int errors = document->getNumErrors();
 
  cout << endl;
  cout << "            filename: " << filename              << endl;
  cout << "           file size: " << getFileSize(filename) << endl;
  cout << "      read time (ms): " << stop - start          << endl;
  cout << " validation error(s): " << errors << endl;
  cout << endl;
 
  document->printErrors(cerr);
 
  delete document;
  return errors;
}
 
END_C_DECLS