translateMath.cpp

Translates infix formulas into MathML and vice-versa.

/**
 * @file    translateMath.cpp
 * @brief   Translates infix formulas into MathML and vice-versa
 * @author  Sarah Keating
 * @author  Ben Bornstein
 *
 * <!--------------------------------------------------------------------------
 * This sample program is distributed under a different license than the rest
 * of libSBML.  This program uses the open-source MIT license, as follows:
 *
 * Copyright (c) 2013-2018 by the California Institute of Technology
 * (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
 * and the University of Heidelberg (Germany), with support from the National
 * Institutes of Health (USA) under grant R01GM070923.  All rights reserved.
 *
 * Permission is hereby granted, free of charge, to any person obtaining a
 * copy of this software and associated documentation files (the "Software"),
 * to deal in the Software without restriction, including without limitation
 * the rights to use, copy, modify, merge, publish, distribute, sublicense,
 * and/or sell copies of the Software, and to permit persons to whom the
 * Software is furnished to do so, subject to the following conditions:
 *
 * The above copyright notice and this permission notice shall be included in
 * all copies or substantial portions of the Software.
 *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
 * THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
 * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
 * DEALINGS IN THE SOFTWARE.
 *
 * Neither the name of the California Institute of Technology (Caltech), nor
 * of the European Bioinformatics Institute (EMBL-EBI), nor of the University
 * of Heidelberg, nor the names of any contributors, may be used to endorse
 * or promote products derived from this software without specific prior
 * written permission.
 * ------------------------------------------------------------------------ -->
 */
 
 
#include <iostream>
 
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
 
#include <sbml/SBMLTypes.h>
 
 
#define BUFFER_SIZE 1024
 
 
using namespace std;
LIBSBML_CPP_NAMESPACE_USE
 
char *translateInfix  (const char *formula);
char *translateMathML (const char *xml);
 
 
int
main (int argc, char* argv[])
{
  char            line[BUFFER_SIZE];
  char*           trimmed;
  char*           result;
  char*           str;
  size_t          len;
  StringBuffer_t* sb = StringBuffer_create(1024);
 
 
  cout << endl 
       << "This program translates infix formulas into MathML and" << endl
       << "vice-versa.  Enter or return on an empty line triggers" << endl
       << "translation. Ctrl-C quits" << endl
       << endl;
 
  do
  {
    cout << "Enter infix formula or MathML expression (Ctrl-C to quit):"
         << endl << endl;
    cout << "> " ;
 
    cin.getline(line, BUFFER_SIZE, '\n');
 
    while (line != 0)
    {
      trimmed = util_trim(line);
      len     = strlen(trimmed);
 
      if (len > 0)
      {
        StringBuffer_append    (sb, trimmed);
        StringBuffer_appendChar(sb, '\n');
      }
      else
      {
        str    = StringBuffer_getBuffer(sb);
        result = (str[0] == '<') ? translateMathML(str) : translateInfix(str);
        if (result==NULL) {
          cout << "Unable to parse string." << endl;
        }
        else {
          cout << "Result:" << endl << endl << result << endl << endl << endl;
        }
        StringBuffer_reset(sb);
        break;
      }
 
      cin.getline(line, BUFFER_SIZE, '\n');
    }
  } while (line != 0);
 
  StringBuffer_free(sb);
  return 0;
}
 
 
/**
 * Translates the given infix formula into MathML.
 *
 * @return the MathML as a string.  The caller owns the memory and is
 * responsible for freeing it.
 */
char *
translateInfix (const char* formula)
{
  char*    result;
  ASTNode* math = SBML_parseFormula(formula);
 
  result = writeMathMLToString(math);
  ASTNode_free(math);
 
  return result;
}
 
 
/**
 * Translates the given MathML into an infix formula.  The MathML must
 * contain no leading whitespace, but an XML header is optional.
 *
 * @return the infix formula as a string.  The caller owns the memory and
 * is responsible for freeing it.
 */
char *
translateMathML (const char* xml)
{
  char*           result;
  ASTNode_t*      math;
 
  math   = readMathMLFromString(xml);
  result = SBML_formulaToString(math);
 
  ASTNode_free(math);
  return result;
}