All Differences
Removals
Additions
Changes
Bold is New, strike is deleted


A  C E F G H I J K L M N O P R S T U V W X TOP
AbstractSBase
AbstractTreeNode
addAll
  type  (int, Collection<? extends T>) in org.sbml.jsbml.ListOf
  type  (Collection<? extends T>) in org.sbml.jsbml.ListOf
addCVTerm
addNamespace (String, String, String)
Annotation
  org.sbml.jsbml
  Annotation (String) constructor
  Annotation (String, List<CVTerm>) constructor
annotationNameSpaces
append (SBase)
appendNoRDFAnnotation (String)
appendNotes
  type  (String) in org.sbml.jsbml.AbstractSBase
  type  (String) in org.sbml.jsbml.SBase
ASTNode
ASTNodeCompiler

C  A E F G H I J K L M N O P R S T U V W X TOP
characters
clone ()
Compartment
Constraint
containsUndeclaredUnits
  type  () in org.sbml.jsbml.Compartment
  type  () in org.sbml.jsbml.Species
convertModel (T)
convertStringToXMLNode (String)
convertXMLNodeToString (XMLNode)
createModel ()
createSpeciesType
  type  () in org.sbml.jsbml.Model
  type  (String) in org.sbml.jsbml.Model
Creator
CVTerm
CVTerm.Qualifier

E  A C F G H I J K L M N O P R S T U V W X TOP
Event

F  A C E G H I J K L M N O P R S T U V W X TOP
filterList (Filter)
FindUnitsCompiler
firePropertyChange (String, Object, Object)
FormulaCompiler
FormulaParser
FormulaParserConstants
FunctionDefinition

G  A C E F H I J K L M N O P R S T U V W X TOP
getAnnotationBuilder ()
getAnnotationString
  type  () in org.sbml.jsbml.AbstractSBase
  type  () in org.sbml.jsbml.SBase
getAttributes ()
getChild (int)
getCompartmentType
  type  (int) in org.sbml.jsbml.Model
  type  (String) in org.sbml.jsbml.Model
getListOfSBMLElementsToWrite (Object)
getMessageString ()
getNonRDFannotation ()
getNotesString
  type  () in org.sbml.jsbml.AbstractSBase
  type  () in org.sbml.jsbml.SBase
getNumChildren
  type  () in org.sbml.jsbml.AbstractTreeNode
  type  () in org.sbml.jsbml.xml.XMLNode
getOriginalModel ()
getParent ()
getSBMLDocumentNamespaces ()
getSpatialSizeUnits ()
getSpatialSizeUnitsInstance ()
getSpeciesType
  type  (int) in org.sbml.jsbml.Model
  type  (String) in org.sbml.jsbml.Model
getTerm ()
getTriple ()
getUnits ()
getUnitsInstance ()
getUserObject (Object)
getWriteWarnings (T)

H  A C E F G I J K L M N O P R S T U V W X TOP
History
history

I  A C E F G H J K L M N O P R S T U V W X TOP
isSetSpatialSizeUnitsInstance ()
isSetTypeQualifier ()

J  A C E F G H I K L M N O P R S T U V W X TOP
JSBML

K  A C E F G H I J L M N O P R S T U V W X TOP
KineticLaw

L  A C E F G H I J K M N O P R S T U V W X TOP
LaTeXCompiler
ListOf
listOf
LocalParameter

M  A C E F G H I J K L N O P R S T U V W X TOP
MathMLCompiler
MathMLParser
MathMLStaxParser
Model

N  A C E F G H I J K L M O P R S T U V W X TOP
nonRDFAnnotation
org.sbml.jsbml
org.sbml.jsbml.text.parser
org.sbml.jsbml.util
org.sbml.jsbml.util.compilers
org.sbml.jsbml.util.filters
org.sbml.jsbml.xml
org.sbml.jsbml.xml.parsers
org.sbml.jsbml.xml.stax
org.sbml.jsbml.xml.xstream.converter

P  A C E F G H I J K L M N O R S T U V W X TOP
ParseException
parseSBMLShort (String)
processAttribute
  type  (String, String, String, String, String, boolean, Object) in org.sbml.jsbml.xml.parsers.MathMLParser
  type  (String, String, String, String, String, boolean, Object) in org.sbml.jsbml.xml.parsers.MathMLStaxParser
  type  (String, String, String, String, String, boolean, Object) in org.sbml.jsbml.xml.parsers.ReadingParser
  type  (String, String, String, String, String, boolean, Object) in org.sbml.jsbml.xml.parsers.SBMLCoreParser
processStartElement
  type  (String, String, String, boolean, boolean, Object) in org.sbml.jsbml.xml.parsers.MathMLParser
  type  (String, String, String, boolean, boolean, Object) in org.sbml.jsbml.xml.parsers.MathMLStaxParser
  type  (String, String, String, boolean, boolean, Object) in org.sbml.jsbml.xml.parsers.ReadingParser
  type  (String, String, String, boolean, boolean, Object) in org.sbml.jsbml.xml.parsers.SBMLCoreParser
PropertyUndefinedError

R  A C E F G H I J K L M N O P S T U V W X TOP
Reaction
ReadingParser
removeCompartmentType
  type  (int) in org.sbml.jsbml.Model
  type  (String) in org.sbml.jsbml.Model
removeSpeciesType
  type  (int) in org.sbml.jsbml.Model
  type  (String) in org.sbml.jsbml.Model

S  A C E F G H I J K L M N O P R T U V W X TOP
SBase
SBMLCoreParser
SBMLDocument
SBMLError
SBMLErrorLog
SBMLInputConverter
SBMLObjectForXML
SBMLOutputConverter
SBMLReader
SBMLWriter
SBO
SBO.Term
SBO.Triple
SBOFilter
set (int, SBase)
setFormula (String)
setId (String)
setMessage (String)
setNonRDFAnnotation (String)
setNotes
  type  (String) in org.sbml.jsbml.AbstractSBase
  type  (String) in org.sbml.jsbml.SBase
setParent (TreeNode)
setSpatialSizeUnits
  type  (String) in org.sbml.jsbml.Species
  type  (UnitDefinition) in org.sbml.jsbml.Species
setThisAsParentSBMLObject (SBase)
Species
SpeciesReference
StringTools

T  A C E F G H I J K L M N O P R S U V W X TOP
toString
  type  () in org.sbml.jsbml.SpeciesReference
  type  () in org.sbml.jsbml.xml.XMLNode
toXML (XMLNode)
toXMLString ()
TreeNodeChangeEvent
TreeNodeWithChangeSupport

U  A C E F G H I J K L M N O P R S T V W X TOP
Unit
UnitDefinition
UnitsCompiler
unregister
  type  (SBase) in org.sbml.jsbml.KineticLaw
  type  (SBase) in org.sbml.jsbml.Model

V  A C E F G H I J K L M N O P R S T U W X TOP
ValuePair

W  A C E F G H I J K L M N O P R S T U V X TOP
write
  type  (SBMLDocument, String) in org.sbml.jsbml.xml.stax.SBMLWriter
  type  (SBMLDocument, String, String, String) in org.sbml.jsbml.xml.stax.SBMLWriter
writeAnnotation (SBase)
writeSBML (SBMLDocument, String)
WritingParser

X  A C E F G H I J K L M N O P R S T U V W TOP
XMLAttributes
XMLNode
XMLNodeWriter
  org.sbml.jsbml.xml.parsers
  XMLNodeWriter (XMLStreamWriter, int, int, char) constructor
XMLToken
XMLTriple