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Class org.sbml.jsbml.AbstractSBase

Removed Methods
void addNamespace(String) Adds an additional namespace to the set of namespaces of this SBase if the given namespace is not yet present within this SortedSet.
SortedSet<String> getNamespaces()  
boolean removeNamespace(String) @param namespace
void unregister(SBase)  
 

Added Methods
void addExtension(String, SBasePlugin)  
void addPlugin(String, SBasePlugin)  
History createHistory() Creates a new History and associates it with the annotation of this element.
SBasePlugin createPlugin(String)  
void disablePackage(String) Disables the given SBML Level 3 package on this SBMLDocument.
void enablePackage(String) Enables the given SBML Level 3 package on this SBMLDocument.
void enablePackage(String, boolean) Enables or disables the given SBML Level 3 package on this SBMLDocument.
List<String> filterCVTerms(Qualifier, boolean, String[])  
List<String> filterCVTerms(Qualifier, String, boolean)  
int getCVTermCount()  
SBasePlugin getExtension(String)  
int getExtensionCount()  
(Map<String, SBasePlugin>getExtensionPackages()  
IdManager getIdManager(SBase) Returns an IdManager that can register the given SBase.
String getNamespace()  
int getNumPlugins()  
SBasePlugin getPlugin(String)  
boolean isExtendedByOtherPackages()  
boolean isPackageEnabled(String)  
boolean isPackageURIEnabled(String)  
boolean isPkgEnabled(String)  
boolean isPkgURIEnabled(String)  
boolean isSetPlugin(String)  
boolean isValidMetaId(String) Checks if the given identifier candidate satisfies the requirements for a valid meta identifier (see SBML L2V4 p.
boolean removeCVTerm(CVTerm) Removes the given CVTerm.
CVTerm removeCVTerm(int) Removes the CVTerm at the given index.
void setNamespace(String) Sets the XML namespace to which this SBase belong.
void unregisterChild(SBase)  
void unsetExtension(String)  
void unsetNamespace() Unsets the namespace that is associated to this SBase.
void unsetPlugin(String)  
 

Changed Methods
void firePropertyChange(String, Object, Object) Method was inherited from AbstractTreeNode, but is now defined locally.  
String getAnnotationString() Change in exceptions thrown from no exceptions to javax.xml.stream.XMLStreamException.
Returns the Annotation of this SBML object as a String.
String getNotesString() Change in exceptions thrown from no exceptions to javax.xml.stream.XMLStreamException.
 
void appendNotes(String) Change in exceptions thrown from no exceptions to javax.xml.stream.XMLStreamException.
 
void setNotes(String) Change in exceptions thrown from no exceptions to javax.xml.stream.XMLStreamException.
 
 

Added Fields
(SortedMap<String, XMLNode>ignoredExtensions Map containing the ignored package objects.
XMLNode ignoredXMLElements Contains the unknown XML attributes or elements.