All Differences
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Additions
Changes
Bold is New, strike is deleted


A  B C E F G H I K L M N O P R S T U V X TOP
AbstractSBase
AbstractSBasePlugin
AbstractTreeNode
accept
  type  (SBase) in org.sbml.jsbml.KineticLaw
  type  (SBase) in org.sbml.jsbml.Model
addAllChangeListeners
  type  (Collection<TreeNodeChangeListener>, boolean) in org.sbml.jsbml.AbstractTreeNode
  type  (Collection<TreeNodeChangeListener>, boolean) in org.sbml.jsbml.util.TreeNodeWithChangeSupport
addCVTerm
addPlugin
  type  (String, SBasePlugin) in org.sbml.jsbml.AbstractSBase
  type  (String, SBasePlugin) in org.sbml.jsbml.SBase
Annotation
annotationNameSpaces
ASTNode
ASTNodeCompiler

B  A C E F G H I K L M N O P R S T U V X TOP
base
BASE_UNIT_SUFFIX

C  A B E F G H I K L M N O P R S T U V X TOP
checkBrackets (ASTNode)
checkDenominatorBrackets (ASTNode)
clone
  type  () in org.sbml.jsbml.util.ListOfWithName
  type  () in org.sbml.jsbml.util.ValuePair
Compartment
containsUndeclaredUnits
  type  () in org.sbml.jsbml.Compartment
  type  () in org.sbml.jsbml.Species
CVTerm

E  A B C F G H I K L M N O P R S T U V X TOP
equals (Object)
Event

F  A B C E G H I K L M N O P R S T U V X TOP
filterCVTerms
  type  (Qualifier, boolean, String[]) in org.sbml.jsbml.AbstractSBase
  type  (Qualifier, boolean, String[]) in org.sbml.jsbml.SBase
filterResources
  type  (String) in org.sbml.jsbml.CVTerm
  type  (String[]) in org.sbml.jsbml.CVTerm
  type  (Pattern[]) in org.sbml.jsbml.CVTerm
FindUnitsCompiler
fireNodeAddedEvent ()
fireNodeRemovedEvent ()
firePropertyChange
  type  (String, Object, Object) in org.sbml.jsbml.AbstractSBase
  type  (String, Object, Object) in org.sbml.jsbml.ext.AbstractSBasePlugin
FormulaCompiler
FormulaCompilerLibSBML
FormulaParser
FormulaParserConstants
FormulaParserLL3
FormulaParserLL3Constants
formulaToString (ASTNode, FormulaCompiler)

G  A B C E F H I K L M N O P R S T U V X TOP
getActivator ()
getChild (int)
getChildElement (String, String)
getChildElements (String, String)
getEventAssignment (String)
getExtensionCount
  type  () in org.sbml.jsbml.AbstractSBase
  type  () in org.sbml.jsbml.SBase
getIdManager (SBase)
getNumChildren ()
getProcess ()
getReadingParsers ()
getSideProduct ()
getSideSubstrate ()
getTerm ()
getTriple ()
getUnits ()
getUnitsInstance ()
getWritingParsers ()

H  A B C E F G I K L M N O P R S T U V X TOP
hashCode ()
history

I  A B C E F G H K L M N O P R S T U V X TOP
IdManager
IFormulaParser
initDefaults (int, int, boolean)
isAssociation (int)
isDissociation (int)
isPackageEnabledOrDisabled (String)
isProcess (int)
isVector ()

K  A B C E F G H I L M N O P R S T U V X TOP
KineticLaw

L  A B C E F G H I K M N O P R S T U V X TOP
lambdaBody (List<ASTNode>)
LaTeXCompiler
LEFT_BRACES
 in  org.sbml.jsbml.text.parser.FormulaParserConstants
 in  org.sbml.jsbml.text.parser.FormulaParserLL3Constants
LEFT_BRACKET
 in  org.sbml.jsbml.text.parser.FormulaParserConstants
 in  org.sbml.jsbml.text.parser.FormulaParserLL3Constants
ListOfWithName
  org.sbml.jsbml.util
  ListOfWithName (ListOfWithName<T>) constructor
  ListOfWithName (ListOfWithName<SBase>) constructor
LocalParameter
logicalOperation (String, List<ASTNode>)

M  A B C E F G H I K L N O P R S T U V X TOP
main (String[])
MathMLCompiler
metaIds ()
Model
ModelBuilder

N  A B C E F G H I K L M O P R S T U V X TOP
nonRDFAnnotation
numBvars
numPiece

O  A B C E F G H I K L M N P R S T U V X TOP
of (Comparable<? super L>, Comparable<? super V>)
org.sbml.jsbml
org.sbml.jsbml.ext
org.sbml.jsbml.math
org.sbml.jsbml.math.compiler
org.sbml.jsbml.text.parser
org.sbml.jsbml.util
org.sbml.jsbml.util.compilers
org.sbml.jsbml.xml
org.sbml.jsbml.xml.parsers

P  A B C E F G H I K L M N O R S T U V X TOP
Pair
parse ()
ParseException
  org.sbml.jsbml.text.parser
  ParseException (Throwable) constructor
parseFormula (String, IFormulaParser)
ParserManager
PROPERTY_UNDEFINED_EXCEPTION_MSG
PROPERTY_UNDEFINED_EXCEPTION_MSG_SBASE
PROPERTY_UNDEFINED_EXCEPTION_MSG_TREE_NODE
PropertyUndefinedError
  org.sbml.jsbml
  PropertyUndefinedError (String, TreeNode) constructor

R  A B C E F G H I K L M N O P S T U V X TOP
readingParsers
register
  type  (SBase) in org.sbml.jsbml.KineticLaw
  type  (SBase) in org.sbml.jsbml.Model
relation (ASTNode, String, ASTNode)
removeAllTreeNodeChangeListeners
  type  (boolean) in org.sbml.jsbml.AbstractTreeNode
  type  (boolean) in org.sbml.jsbml.util.TreeNodeWithChangeSupport
removeCVTerm
  type  (CVTerm) in org.sbml.jsbml.AbstractSBase
  type  (int) in org.sbml.jsbml.AbstractSBase
  type  (CVTerm) in org.sbml.jsbml.Annotation
  type  (int) in org.sbml.jsbml.Annotation
  type  (CVTerm) in org.sbml.jsbml.SBase
  type  (int) in org.sbml.jsbml.SBase
 in  org.sbml.jsbml.util.TreeNodeChangeEvent
removeEventAssignment (EventAssignment)
removeFromParent
  type  () in org.sbml.jsbml.CVTerm
  type  () in org.sbml.jsbml.ext.AbstractSBasePlugin
removeResource (int)
RIGHT_BRACES
 in  org.sbml.jsbml.text.parser.FormulaParserConstants
 in  org.sbml.jsbml.text.parser.FormulaParserLL3Constants
RIGHT_BRACKET
 in  org.sbml.jsbml.text.parser.FormulaParserConstants
 in  org.sbml.jsbml.text.parser.FormulaParserLL3Constants

S  A B C E F G H I K L M N O P R T U V X TOP
SBase
SBMLDocument
SBO
SBO.Term
SBO.Triple
selector (Object[])
setAreaUnits (Kind)
setCaseSensitive (boolean)
setExtendedSBase (SBase)
setExtentUnits (Kind)
setId (String)
setLengthUnits (Kind)
setParent (TreeNode)
setSubstanceUnits (Kind)
setTimeUnits (Kind)
setVolumeUnits (Kind)
SLPITTER
Species
SpeciesReference
SPLITTER
stringToType

T  A B C E F G H I K L M N O P R S U V X TOP
toFormula (FormulaCompiler)
toString
  type  () in org.sbml.jsbml.SpeciesReference
  type  () in org.sbml.jsbml.util.ValuePair
TreeNodeChangeEvent
TreeNodeWithChangeSupport

U  A B C E F G H I K L M N O P R S T V X TOP
Unit
UnitDefinition
UnitsCompiler
unregister
  type  (SBase) in org.sbml.jsbml.AbstractSBase
  type  (SBase) in org.sbml.jsbml.KineticLaw
  type  (SBase) in org.sbml.jsbml.Model
  type  (SBase) in org.sbml.jsbml.SBase
unregisterChild
  type  (SBase) in org.sbml.jsbml.AbstractSBase
  type  (SBase) in org.sbml.jsbml.SBase
userObject

V  A B C E F G H I K L M N O P R S T U X TOP
ValuePair
valuePairOf (Comparable<? super L>, Comparable<? super V>)
vector
  type  (List<ASTNode>) in org.sbml.jsbml.util.compilers.ASTNodeCompiler
  type  (List<ASTNode>) in org.sbml.jsbml.util.compilers.FindUnitsCompiler
  type  (Object[]) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type  (List<ASTNode>) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type  (List<ASTNode>) in org.sbml.jsbml.util.compilers.LaTeXCompiler
  type  (List<ASTNode>) in org.sbml.jsbml.util.compilers.MathMLCompiler
  type  (List<ASTNode>) in org.sbml.jsbml.util.compilers.UnitsCompiler

X  A B C E F G H I K L M N O P R S T U V TOP
XMLNode