Package org.sbml.jsbml

Removed Classes
SBO.Term	This is a convenient wrapper class for the corresponding implementation of org.biojava.ontology.Term in BioJava as it provides specialized methods to obtain the information from the SBO OBO file directly and under the same name as the keys are given in that file.
SBO.Triple	This is a wrapper class for the corresponding BioJava class org.biojava.ontology.Triple, to allow for simplified access to the properties of a subject-predicate-object triple in this ontology.

 

Changed Classes and Interfaces
AbstractNamedSBase	The base class for each SBML element with an optional id and name.
AbstractSBase	The base class for each SBase component.
Model	JSBML implementation of SBML's Model construct.
SBMLDocument	Represents the 'sbml' root node of a SBML file.
SBMLWriter	Provides methods for writing SBML to files, text strings or streams.
SBO	Methods for interacting with Systems Biology Ontology (SBO) terms.
SBase	The interface to implement for each SBML element.
SpeciesReference	Represents the speciesReference XML element of a SBML file.