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A  C E F G I L M N O P R S T U TOP
AbstractSBasePlugin (SBasePlugin) constructor
addNestedCVTerm (CVTerm)
Annotation (XMLNode) constructor
appendAnnotation
  type  (String) in org.sbml.jsbml.AbstractSBase
  type  (XMLNode) in org.sbml.jsbml.AbstractSBase
  type  (String) in org.sbml.jsbml.SBase
  type  (XMLNode) in org.sbml.jsbml.SBase
appendNonRDFAnnotation
  type  (String) in org.sbml.jsbml.Annotation
  type  (XMLNode) in org.sbml.jsbml.Annotation
ASTNode (ASTNode2) constructor
astNodeToTree (ASTNode, String, String)

C  A E F G I L M N O P R S T U TOP
checkAndSetPackageNamespaceAndVersion
  type  (SBase) in org.sbml.jsbml.AbstractSBase
  type  (SBasePlugin, SBMLDocument) in org.sbml.jsbml.AbstractSBase
checkRelationalArgumentBrackets (ASTNode)
CobraFormulaParser
CobraFormulaParserConstants
CobraFormulaParserTokenManager
CobraUtil
CompartmentalizedSBase
createNestedCVTerm ()
createStoichiometryMath (ASTNode)
createTrigger (ASTNode)
CVTerm (XMLNode) constructor

E  A C F G I L M N O P R S T U TOP
elementNamespace
EXTENT

F  A C E G I L M N O P R S T U TOP
FORMULA_ARGUMENT_SEPARATOR
FormulaParserASTNode2
FormulaParserASTNode2Constants
FormulaParserASTNode2TokenManager
FormulaParserLL3ASTNode2
FormulaParserLL3ASTNode2Constants
FormulaParserLL3ASTNode2TokenManager

G  A C E F I L M N O P R S T U TOP
getElementNamespace ()
getEnabledPackageNamespace (String)
getErrorsBySeverity (SEVERITY)
getIdOrName (NamedSBase)
getListOfNestedCVTerms ()
getNameOrId (NamedSBase)
getNestedCVTerm (int)
getNestedCVTermCount ()
getNumNestedCVTerms ()
getPackageName
  type  () in org.sbml.jsbml.AbstractSBase
  type  () in org.sbml.jsbml.SBase
getPackageVersion
  type  () in org.sbml.jsbml.AbstractSBase
  type  () in org.sbml.jsbml.SBase
getURI
  type  () in org.sbml.jsbml.AbstractSBase
  type  () in org.sbml.jsbml.SBase
getXMLNode ()

I  A C E F G L M N O P R S T U TOP
IMPLEMENTATION_ASTNODE2
IMPLEMENTATION_HISTORIC
IMPLEMENTATION_VERSION
isCompartmentMandatory
  type  () in org.sbml.jsbml.Reaction
  type  () in org.sbml.jsbml.Species
isSetListOfNestedCVTerms ()
isSetPackageVErsion
  type  () in org.sbml.jsbml.AbstractSBase
  type  () in org.sbml.jsbml.SBase
isSetPackageVersion
  type  () in org.sbml.jsbml.ext.AbstractSBasePlugin
  type  () in org.sbml.jsbml.ext.SBasePlugin
isValidChemicalFormula (String)

L  A C E F G I M N O P R S T U TOP
LevelVersionError (SBasePlugin, SBase) constructor

M  A C E F G I L N O P R S T U TOP
mathMLClass
MathMLXMLStreamCompiler
  MathMLXMLStreamCompiler (String) constructor
  MathMLXMLStreamCompiler () constructor
MODULO

N  A C E F G I L M O P R S T U TOP
number
org.sbml.jsbml.math
org.sbml.jsbml.math.compiler
org.sbml.jsbml.math.parser

P  A C E F G I L M N O R S T U TOP
PACKAGE_VERSION_MISMATCH_MSG
packageName
 in  org.sbml.jsbml.AbstractSBase
 in  org.sbml.jsbml.util.TreeNodeChangeEvent
PackageUtil
packageVersion
packageVersionMismatchMessage
  type  (SBase, SBase) in org.sbml.jsbml.LevelVersionError
  type  (SBasePlugin, SBase) in org.sbml.jsbml.LevelVersionError
piecewise (MathContainer, ASTNode[])

R  A C E F G I L M N O P S T U TOP
refId
removeNestedCVTerm
  type  (CVTerm) in org.sbml.jsbml.CVTerm
  type  (int) in org.sbml.jsbml.CVTerm
resourceBundle

S  A C E F G I L M N O P R T U TOP
setAnnotation
  type  (String) in org.sbml.jsbml.AbstractSBase
  type  (XMLNode) in org.sbml.jsbml.AbstractSBase
  type  (String) in org.sbml.jsbml.SBase
  type  (XMLNode) in org.sbml.jsbml.SBase
setListOfNestedCVTerms (List<CVTerm>)
setNamespace (String)
setPackageName (String)
setPackageVersion
  type  (int) in org.sbml.jsbml.AbstractSBase
  type  (int) in org.sbml.jsbml.SBase
  type  (int) in org.sbml.jsbml.ext.AbstractSBasePlugin
  type  (int) in org.sbml.jsbml.ext.SBasePlugin
setParentSBMLObject (MathContainer)
setXMLNode (XMLNode)
size ()

T  A C E F G I L M N O P R S U TOP
toASTNode2 ()
toSimpleString ()
toString (PropertyChangeEvent)
toXML ()
toXMLNode ()

U  A C E F G I L M N O P R S T TOP
UNKNOWN_XML_NODE
unsetCompartment ()
unsetListOfNestedCVTerms ()