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A  C E F G I L M N O P R S T U X TOP
AbstractSBase
AbstractSBasePlugin
  org.sbml.jsbml.ext
  AbstractSBasePlugin (AbstractSBasePlugin) constructor
  AbstractSBasePlugin (SBasePlugin) constructor
AbstractTreeNode
addNestedCVTerm (CVTerm)
Annotation
  org.sbml.jsbml
  Annotation (XMLNode) constructor
appendAnnotation
  type  (String) in org.sbml.jsbml.AbstractSBase
  type  (XMLNode) in org.sbml.jsbml.AbstractSBase
  type  (String) in org.sbml.jsbml.SBase
  type  (XMLNode) in org.sbml.jsbml.SBase
appendNonRDFAnnotation
  type  (String) in org.sbml.jsbml.Annotation
  type  (XMLNode) in org.sbml.jsbml.Annotation
appendNoRDFAnnotation (String)
Assignment
ASTNode
  org.sbml.jsbml
  ASTNode (ASTNode2) constructor
astNodeToTree (ASTNode, String, String)

C  A E F G I L M N O P R S T U X TOP
checkAndSetPackageNamespaceAndVersion
  type  (SBase) in org.sbml.jsbml.AbstractSBase
  type  (SBasePlugin, SBMLDocument) in org.sbml.jsbml.AbstractSBase
checkConsistency (String, Map<String, String>)
checkRelationalArgumentBrackets (ASTNode)
clone ()
CobraFormulaParser
CobraFormulaParserConstants
CobraFormulaParserTokenManager
CobraUtil
CompartmentalizedSBase
createNestedCVTerm ()
createStoichiometryMath (ASTNode)
createTrigger (ASTNode)
CVTerm
  org.sbml.jsbml
  CVTerm (XMLNode) constructor

E  A C F G I L M N O P R S T U X TOP
elementNamespace
Event
EXTENT

F  A C E G I L M N O P R S T U X TOP
FORMULA_ARGUMENT_SEPARATOR
FormulaCompiler
FormulaParserASTNode2
FormulaParserASTNode2Constants
FormulaParserASTNode2TokenManager
FormulaParserConstants
FormulaParserLL3ASTNode2
FormulaParserLL3ASTNode2Constants
FormulaParserLL3ASTNode2TokenManager
FunctionDefinition

G  A C E F I L M N O P R S T U X TOP
getDerivedUnits ()
getElementNamespace ()
getEnabledPackageNamespace (String)
getErrorsBySeverity (SEVERITY)
getIdOrName (NamedSBase)
getListOfNestedCVTerms ()
getNameOrId (NamedSBase)
getNestedCVTerm (int)
getNestedCVTermCount ()
getNumNestedCVTerms ()
getPackageName
  type  () in org.sbml.jsbml.AbstractSBase
  type  () in org.sbml.jsbml.SBase
getPackageVersion
  type  () in org.sbml.jsbml.AbstractSBase
  type  () in org.sbml.jsbml.SBase
getURI
  type  () in org.sbml.jsbml.AbstractSBase
  type  () in org.sbml.jsbml.SBase
getXMLNode ()

I  A C E F G L M N O P R S T U X TOP
ILLEGAL_CONSTANT_VARIABLE_MSG
ILLEGAL_VARIABLE_EXCEPTION_MSG
IMPLEMENTATION_ASTNODE2
IMPLEMENTATION_HISTORIC
IMPLEMENTATION_VERSION
INVALID_OPERATOR_MSG
isCompartmentMandatory
  type  () in org.sbml.jsbml.Reaction
  type  () in org.sbml.jsbml.Species
isSetListOfNestedCVTerms ()
isSetPackageVErsion
  type  () in org.sbml.jsbml.AbstractSBase
  type  () in org.sbml.jsbml.SBase
isSetPackageVersion
  type  () in org.sbml.jsbml.ext.AbstractSBasePlugin
  type  () in org.sbml.jsbml.ext.SBasePlugin
isValidChemicalFormula (String)

L  A C E F G I M N O P R S T U X TOP
LevelVersionError
  org.sbml.jsbml
  LevelVersionError (SBasePlugin, SBase) constructor
ListOf

M  A C E F G I L N O P R S T U X TOP
mathMLClass
MathMLXMLStreamCompiler
  org.sbml.jsbml.util.compilers
  MathMLXMLStreamCompiler (String) constructor
  MathMLXMLStreamCompiler () constructor
MODULO

N  A C E F G I L M O P R S T U X TOP
NO_SUCH_VARIABLE_EXCEPTION_MSG
number
org.sbml.jsbml
org.sbml.jsbml.ext
org.sbml.jsbml.math
org.sbml.jsbml.math.compiler
org.sbml.jsbml.math.parser
org.sbml.jsbml.text.parser
org.sbml.jsbml.util
org.sbml.jsbml.util.compilers
org.sbml.jsbml.validator
org.sbml.jsbml.xml
org.sbml.jsbml.xml.parsers

P  A C E F G I L M N O R S T U X TOP
PACKAGE_VERSION_MISMATCH_MSG
packageName
 in  org.sbml.jsbml.AbstractSBase
 in  org.sbml.jsbml.util.TreeNodeChangeEvent
PackageUtil
packageVersion
packageVersionMismatchMessage
  type  (SBase, SBase) in org.sbml.jsbml.LevelVersionError
  type  (SBasePlugin, SBase) in org.sbml.jsbml.LevelVersionError
piecewise (MathContainer, ASTNode[])

R  A C E F G I L M N O P S T U X TOP
Reaction
refId
removeNestedCVTerm
  type  (CVTerm) in org.sbml.jsbml.CVTerm
  type  (int) in org.sbml.jsbml.CVTerm
resourceBundle

S  A C E F G I L M N O P R T U X TOP
SBase
SBasePlugin
SBMLDocument
SBMLErrorLog
SBMLReader
SBMLtools
SBMLValidator
setAnnotation
  type  (String) in org.sbml.jsbml.AbstractSBase
  type  (XMLNode) in org.sbml.jsbml.AbstractSBase
  type  (String) in org.sbml.jsbml.SBase
  type  (XMLNode) in org.sbml.jsbml.SBase
setCompartment
  type  (String) in org.sbml.jsbml.Reaction
  type  (Compartment) in org.sbml.jsbml.Reaction
  type  (String) in org.sbml.jsbml.Species
  type  (Compartment) in org.sbml.jsbml.Species
setListOfNestedCVTerms (List<CVTerm>)
setMetaId
  type  (String) in org.sbml.jsbml.AbstractSBase
  type  (String) in org.sbml.jsbml.SBase
setNamespace (String)
setPackageName (String)
setPackageVersion
  type  (int) in org.sbml.jsbml.AbstractSBase
  type  (int) in org.sbml.jsbml.SBase
  type  (int) in org.sbml.jsbml.ext.AbstractSBasePlugin
  type  (int) in org.sbml.jsbml.ext.SBasePlugin
setParentSBMLObject (MathContainer)
setXMLNode (XMLNode)
SimpleTreeNodeChangeListener
size ()
Species
SpeciesReference
SyntaxChecker

T  A C E F G I L M N O P R S U X TOP
toASTNode2 ()
toSimpleString ()
toString (PropertyChangeEvent)
toXML ()
toXMLNode ()
TreeNodeChangeEvent

U  A C E F G I L M N O P R S T X TOP
UnitDefinition
UNKNOWN_XML_NODE
unsetCompartment
  type  () in org.sbml.jsbml.Reaction
  type  () in org.sbml.jsbml.Species
unsetListOfNestedCVTerms ()

X  A C E F G I L M N O P R S T U TOP
XMLAttributes