Method Additions Index

Removals

Additions

Changes

Bold is New, ~~strike~~ is deleted

A C D E F G H I L M P Q R S T U TOP
add
  type (SBMLError) in org.sbml.jsbml.SBMLErrorLog
  type (Option) in org.sbml.jsbml.SBMLErrorLog
addExtension (String, ASTNodePlugin)
addPlugin (String, ASTNodePlugin)
addResource (int, String)
addSemanticsAnnotation (XMLNode)

C A D E F G H I L M P Q R S T U TOP
checkAttribute (String)
checkConsistencyOffline ()
compileSemanticAnnotations (ASTNode)
createInvalidUnit ()
createPlugin (String)
createPluginFor (ASTNode)

D A C E F G H I L M P Q R S T U TOP
disablePackage (String)

E A C D F G H I L M P Q R S T U TOP
enablePackage
  type (String) in org.sbml.jsbml.ASTNode
  type (String, boolean) in org.sbml.jsbml.ASTNode

F A C D E G H I L M P Q R S T U TOP
findUniqueSBase (String)

G A C D E F H I L M P Q R S T U TOP
getAllostericActivator ()
getAllostericInhibitor ()
getAssignmentRuleByVariable (String)
getBiochemicalReaction ()
getCompetitiveInhibitor ()
getComplexAssembly ()
getConversion ()
getDegradation ()
getDNA ()
getDNASegment ()
getElementByMetaId
  type (String) in org.sbml.jsbml.AbstractSBase
  type (String) in org.sbml.jsbml.SBase
getElementBySId
  type (String) in org.sbml.jsbml.AbstractSBase
  type (String) in org.sbml.jsbml.Model
  type (String) in org.sbml.jsbml.SBase
getEnthalpyChange ()
getEntropyChange ()
getEquilibriumConstant ()
getExtension (String)
getExtensionCount ()
getExtensionPackages ()
getGeneticInteraction ()
getGibbsFreeEnergyChange ()
getId
  type () in org.sbml.jsbml.AbstractSBase
  type () in org.sbml.jsbml.SBase
getInitialAssignmentById (String)
getInitialAssignmentBySymbol (String)
getIonicStrength ()
getIrreversibleInhibitor ()
getListOfSemanticsAnnotations ()
getModifierUnknownActivity ()
getMolecularInteraction ()
getName
  type () in org.sbml.jsbml.AbstractSBase
  type () in org.sbml.jsbml.SBase
getNonAllostericActivator ()
getNonCompetitiveInhibitor ()
getNumberOfNonEmptyChildElement (XMLNode)
getNumPlugins ()
getNumSemanticsAnnotations ()
getOtherListName ()
getpH ()
getPlugin (String)
getPMg ()
getPotentiator ()
getRateOf
  type (String) in org.sbml.jsbml.util.compilers.ASTNodeCompiler
  type (String) in org.sbml.jsbml.util.compilers.FindUnitsCompiler
  type (String) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type (String) in org.sbml.jsbml.util.compilers.LaTeXCompiler
  type (String) in org.sbml.jsbml.util.compilers.MathMLCompiler
  type (String) in org.sbml.jsbml.util.compilers.UnitsCompiler
getRateRuleByVariable (String)
getResource (int)
getRNASegment ()
getRuleById (String)
getRuleByVariable (String)
getSBaseById (String)
getSemanticsAnnotation (int)
getSmallMolecule ()
getTemplateReaction ()
getTemplateReactionRegulation ()
getThermodynamicTemperature ()
getTransportWithBiochemicalReaction ()
getUncompetitiveInhibitor ()
getUnitDefinitionById (String)
getUnknownQualifierName ()

H A C D E F G I L M P Q R S T U TOP
hasTerm
  type (int) in org.sbml.jsbml.SBO
  type (String) in org.sbml.jsbml.SBO

I A C D E F G H L M P Q R S T U TOP
implies
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.ASTNodeCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FindUnitsCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.LaTeXCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.MathMLCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.UnitsCompiler
initDefaults
  type (int, int, boolean) in org.sbml.jsbml.Compartment
  type (int, int, boolean) in org.sbml.jsbml.Parameter
  type (int, int, boolean) in org.sbml.jsbml.Reaction
  type (int, int, boolean) in org.sbml.jsbml.Species
  type (int, int, boolean) in org.sbml.jsbml.SpeciesReference
isExtendedByOtherPackages ()
isIdMandatory
  type () in org.sbml.jsbml.AbstractSBase
  type () in org.sbml.jsbml.SBase
isListOfCompartmentsEmpty ()
isListOfCompartmentTypesEmpty ()
isListOfConstraintsEmpty ()
isListOfEventAssignmentEmpty ()
isListOfEventsEmpty ()
isListOfFunctionDefinitionsEmpty ()
isListOfInitialAssignmentsEmpty ()
isListOfLocalParametersEmpty ()
isListOfModifiersEmpty ()
isListOfParametersEmpty ()
isListOfProductsEmpty ()
isListOfReactantsEmpty ()
isListOfReactionsEmpty ()
isListOfRulesEmpty ()
isListOfSpeciesEmpty ()
isListOfSpeciesTypesEmpty ()
isListOfUnitDefinitionEmpty ()
isListOfUnitsEmpty ()
isLiteral ()
isPackageEnabled (String)
isPackageURIEnabled (String)
isReadingInProgress ()
isSemantics ()
isSetId
  type () in org.sbml.jsbml.AbstractSBase
  type () in org.sbml.jsbml.SBase
isSetName
  type () in org.sbml.jsbml.AbstractSBase
  type () in org.sbml.jsbml.SBase
isSetPlugin (String)
isVariantOfDimensionless ()

L A C D E F G H I M P Q R S T U TOP
logicalOperationFunction (String, List<ASTNode>)

M A C D E F G H I L P Q R S T U TOP
max
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.ASTNodeCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FindUnitsCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.LaTeXCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.MathMLCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.UnitsCompiler
min
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.ASTNodeCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FindUnitsCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.LaTeXCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.MathMLCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.UnitsCompiler

P A C D E F G H I L M Q R S T U TOP
parseMathML (String)
printASTNode ()
printCreator ()
printCVTerm ()
printSpeciesReference
  type () in org.sbml.jsbml.SimpleSpeciesReference
  type () in org.sbml.jsbml.SpeciesReference
printUnit ()
processUnknownElement (String, String, String, Object)

Q A C D E F G H I L M P R S T U TOP
quotient
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.ASTNodeCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FindUnitsCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.LaTeXCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.MathMLCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.UnitsCompiler

R A C D E F G H I L M P Q S T U TOP
rem
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.ASTNodeCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FindUnitsCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.LaTeXCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.MathMLCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.UnitsCompiler
removeResourceURI (int)

S A C D E F G H I L M P Q R T U TOP
setId
  type (String) in org.sbml.jsbml.AbstractSBase
  type (String) in org.sbml.jsbml.SBase
setName
  type (String) in org.sbml.jsbml.AbstractSBase
  type (String) in org.sbml.jsbml.SBase
setOtherListName (String)
setUnknownQualifierName (String)
storeElementsOrder (String, Object)

T A C D E F G H I L M P Q R S U TOP
toFormula ()

U A C D E F G H I L M P Q R S T TOP
unsetExtension (String)
unsetId
  type () in org.sbml.jsbml.AbstractSBase
  type () in org.sbml.jsbml.SBase
unsetName
  type () in org.sbml.jsbml.AbstractSBase
  type () in org.sbml.jsbml.SBase
unsetPlugin (String)