org.sbml.jsbml.math.compiler

Class MathMLXMLStreamCompiler

java.lang.Object

org.sbml.jsbml.math.compiler.MathMLXMLStreamCompiler

Direct Known Subclasses:

HTMLFormula

public class MathMLXMLStreamCompiler
extends java.lang.Object

Writes an ASTNode2 to mathML.

Since:

1.0

Version:

$Rev$

Author:

Nicolas Rodriguez, Victor Kofia

Field Summary

Fields

Modifier and Type	Field and Description
private FindUnitsCompiler	findUnitsCompiler
private java.lang.String	indent
private org.apache.log4j.Logger	logger
(package private) java.text.DecimalFormat	realFormat Formats the real number in a valid way for mathML.
private javax.xml.stream.XMLStreamWriter	writer

Constructor Summary

Constructors

Constructor and Description
MathMLXMLStreamCompiler(javax.xml.stream.XMLStreamWriter writer, java.lang.String indent) Create a new MathMLXMLStreamCompiler.

Method Summary

Modifier and Type	Method and Description
void	compile(ASTNode2 node) Compiles this ASTNode2 and produce an XMLStreamWriter representing this node in mathML.
private void	compileBvar(ASTQualifierNode bvar)
private void	compileCi(ASTCSymbolBaseNode ci)
private void	compileConstantElement(ASTNode2 astNode)
private void	compileCSymbol(ASTCSymbolNode csymbol)
private void	compileElement(ASTFunction astNode)
private void	compileElement(java.lang.String string, ASTFunction function)
private void	compileExponentiale(ASTConstantNumber astConstantNumber)
private void	compileFunctionElement(ASTFunction astNode)
private void	compileInteger(ASTCnIntegerNode integer)
private void	compileLambda(ASTLambdaFunctionNode lambda)
private void	compileLog(ASTLogarithmNode log)
private void	compileLogicalOperator(ASTLogicalOperatorNode operator)
private void	compileNegativeInfinity(ASTCnRealNode real)
private void	compileNotANumber(ASTCnRealNode astNode)
private void	compilePi(ASTConstantNumber astNode)
private void	compilePiecewise(ASTPiecewiseFunctionNode piecewise)
private void	compilePositiveInfinity(ASTCnRealNode astNode)
private void	compileRational(ASTCnRationalNode rational)
private void	compileReal_e(ASTCnExponentialNode exponential)
private void	compileReal(ASTCnRealNode real)
private void	compileRelationalOperator(ASTRelationalOperatorNode operator)
private void	compileRootElement(ASTRootNode root)
private void	compileUserFunction(ASTCiFunctionNode astNode)
private void	compileVector(ASTFunction astNode)
private void	function(java.lang.String functionName, ASTNode2... args)
private void	function(java.lang.String functionName, java.util.List<ASTNode2> args)
boolean	isSBMLNamespaceNeeded(ASTNode2 astNode)
static void	main(java.lang.String[] args)
static java.lang.String	toMathML(ASTNode2 astNode) Writes an ASTNode2 the mathML.
private void	writeEndElement()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

indent

private java.lang.String indent

writer

private final javax.xml.stream.XMLStreamWriter writer

logger

private final org.apache.log4j.Logger logger

findUnitsCompiler

private final FindUnitsCompiler findUnitsCompiler

realFormat

java.text.DecimalFormat realFormat

Formats the real number in a valid way for mathML. When java read 0.000166, it transforms it to 1.66E-4. This DecimalFormat will wrote the number as it was read.

Constructor Detail

MathMLXMLStreamCompiler

public MathMLXMLStreamCompiler(javax.xml.stream.XMLStreamWriter writer,
                               java.lang.String indent)

Create a new MathMLXMLStreamCompiler.

Parameters:

writer - the writer

indent - the starting indentation

Throws:

java.lang.IllegalArgumentException - if the writer is null

Method Detail

main

public static void main(java.lang.String[] args)

Parameters:

args -

toMathML

public static java.lang.String toMathML(ASTNode2 astNode)

Writes an ASTNode2 the mathML.

Parameters:

astNode - the ASTNode2 to serialize as mathML

Returns:

a String representing this ASTNode2 as mathML.

compile

public void compile(ASTNode2 node)

Compiles this ASTNode2 and produce an XMLStreamWriter representing this node in mathML.

Parameters:

node -

Throws:

SBMLException - if any problems occur while checking the ASTNode2 tree.

compileBvar

private void compileBvar(ASTQualifierNode bvar)

Parameters:

bvar -

compileCi

private void compileCi(ASTCSymbolBaseNode ci)

Parameters:

ci -

compileConstantElement

private void compileConstantElement(ASTNode2 astNode)

Parameters:

astNode -

compileCSymbol

private void compileCSymbol(ASTCSymbolNode csymbol)

Parameters:

csymbol -

compileElement

private void compileElement(ASTFunction astNode)

Parameters:

astNode -

compileElement

private void compileElement(java.lang.String string,
                            ASTFunction function)

Parameters:

string - element name

function - the node containing all the element information

compileExponentiale

private void compileExponentiale(ASTConstantNumber astConstantNumber)

Parameters:

astConstantNumber -

compileFunctionElement

private void compileFunctionElement(ASTFunction astNode)

Parameters:

astNode -

compileInteger

private void compileInteger(ASTCnIntegerNode integer)

Parameters:

integer -

compileLambda

private void compileLambda(ASTLambdaFunctionNode lambda)

Parameters:

lambda -

compileLog

private void compileLog(ASTLogarithmNode log)

Parameters:

log -

compileLogicalOperator

private void compileLogicalOperator(ASTLogicalOperatorNode operator)

Parameters:

operator -

compileNegativeInfinity

private void compileNegativeInfinity(ASTCnRealNode real)

Parameters:

real -

compileNotANumber

private void compileNotANumber(ASTCnRealNode astNode)

Parameters:

astNode -

compilePi

private void compilePi(ASTConstantNumber astNode)

Parameters:

astNode -

compilePiecewise

private void compilePiecewise(ASTPiecewiseFunctionNode piecewise)

Parameters:

piecewise -

compilePositiveInfinity

private void compilePositiveInfinity(ASTCnRealNode astNode)

Parameters:

astNode -

compileRational

private void compileRational(ASTCnRationalNode rational)

Parameters:

rational -

compileReal

private void compileReal(ASTCnRealNode real)

Parameters:

real -

compileReal_e

private void compileReal_e(ASTCnExponentialNode exponential)

Parameters:

exponential -

compileRelationalOperator

private void compileRelationalOperator(ASTRelationalOperatorNode operator)

Parameters:

operator -

compileRootElement

private void compileRootElement(ASTRootNode root)

Parameters:

root -

compileUserFunction

private void compileUserFunction(ASTCiFunctionNode astNode)

Parameters:

astNode -

compileVector

private void compileVector(ASTFunction astNode)

Parameters:

astNode -

function

private void function(java.lang.String functionName,
                      ASTNode2... args)

Parameters:

functionName -

args -

function

private void function(java.lang.String functionName,
                      java.util.List<ASTNode2> args)

Parameters:

functionName -

args -

isSBMLNamespaceNeeded

public boolean isSBMLNamespaceNeeded(ASTNode2 astNode)

Parameters:

astNode -

Returns:

writeEndElement

private void writeEndElement()