org.sbml.jsbml.util.compilers

Class FormulaCompilerLibSBML

java.lang.Object

org.sbml.jsbml.util.StringTools

org.sbml.jsbml.util.compilers.FormulaCompiler

org.sbml.jsbml.util.compilers.FormulaCompilerLibSBML

All Implemented Interfaces:

ASTNodeCompiler

public class FormulaCompilerLibSBML
extends FormulaCompiler

This class creates C-like infix formula Strings that represent the content of ASTNodes and try to reproduce the output generated by the LibSBML L3 parser.

This class give an output that is closer to the output produced by the libSBML formulaToL3String method.

Since:

1.0

Version:

$Rev$

Author:

Nicolas Rodriguez

Field Summary

Fields inherited from class org.sbml.jsbml.util.compilers.FormulaCompiler

EXPONENTIALE, FORMULA_ARGUMENT_SEPARATOR, INVERSE_TRIGONOMETRIC_PREFIX

Fields inherited from class org.sbml.jsbml.util.StringTools

DECIMAL_FORMAT, REAL_FORMAT, SCIENTIFIC_FORMAT, underscore

Constructor Summary

Constructors

Constructor and Description
FormulaCompilerLibSBML()

Method Summary

Modifier and Type	Method and Description
ASTNodeValue	and(java.util.List<ASTNode> nodes)
ASTNodeValue	eq(ASTNode left, ASTNode right) Equal.
ASTNodeValue	factorial(ASTNode node)
ASTNodeValue	geq(ASTNode left, ASTNode right) Greater equal.
ASTNodeValue	gt(ASTNode left, ASTNode right) Greater than.
ASTNodeValue	leq(ASTNode left, ASTNode right) Less equal.
ASTNodeValue	lt(ASTNode left, ASTNode right) Less than.
ASTNodeValue	neq(ASTNode left, ASTNode right) Not equal.
ASTNodeValue	not(ASTNode node)
ASTNodeValue	or(java.util.List<ASTNode> nodes)
ASTNodeValue	xor(java.util.List<ASTNode> nodes) Exclusive or.

Methods inherited from class org.sbml.jsbml.util.compilers.FormulaCompiler

abs, arccos, arccosh, arccot, arccoth, arccsc, arccsch, arcsec, arcsech, arcsin, arcsinh, arctan, arctanh, brackets, ceiling, checkBrackets, checkDenominatorBrackets, checkRelationalArgumentBrackets, compile, compile, compile, compile, compile, compile, cos, cosh, cot, coth, csc, csch, delay, diff, exp, floor, frac, frac, frac, function, function, function, getConstantAvogadro, getConstantE, getConstantFalse, getConstantPi, getConstantTrue, getNegativeInfinity, getPositiveInfinity, getRateOf, getSpecies, getStoichiometry, implies, lambda, lambdaBody, ln, log, log, logicalOperation, logicalOperationFunction, max, min, minus, piecewise, plus, pow, pow, quotient, relation, rem, root, root, root, sec, sech, selector, selector, sin, sinh, sqrt, sqrt, sum, symbolTime, tan, tanh, times, times, uMinus, unknownValue, vector, vector

Methods inherited from class org.sbml.jsbml.util.StringTools

append, append, concat, concatStringBuilder, encodeForHTML, fill, fill, firstLetterLowerCase, firstLetterUpperCase, getWordForNumber, leadingZeros, newLine, parseSBMLBoolean, parseSBMLDouble, parseSBMLInt, parseSBMLShort, toHTML, toHTML, toString, toString, toXMLAnnotationString, toXMLMessageString, toXMLNotesString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FormulaCompilerLibSBML

public FormulaCompilerLibSBML()

Method Detail

and

public ASTNodeValue and(java.util.List<ASTNode> nodes)
                 throws SBMLException

Specified by:

and in interface ASTNodeCompiler

Overrides:

and in class FormulaCompiler

Returns:

Throws:

SBMLException

eq

public ASTNodeValue eq(ASTNode left,
                       ASTNode right)
                throws SBMLException

Description copied from interface: ASTNodeCompiler

Equal.

Specified by:

eq in interface ASTNodeCompiler

Overrides:

eq in class FormulaCompiler

Returns:

Throws:

SBMLException

factorial

public ASTNodeValue factorial(ASTNode node)

Specified by:

factorial in interface ASTNodeCompiler

Overrides:

factorial in class FormulaCompiler

Returns:

geq

public ASTNodeValue geq(ASTNode left,
                        ASTNode right)
                 throws SBMLException

Description copied from interface: ASTNodeCompiler

Greater equal.

Specified by:

geq in interface ASTNodeCompiler

Overrides:

geq in class FormulaCompiler

Returns:

Throws:

SBMLException

gt

public ASTNodeValue gt(ASTNode left,
                       ASTNode right)
                throws SBMLException

Description copied from interface: ASTNodeCompiler

Greater than.

Specified by:

gt in interface ASTNodeCompiler

Overrides:

gt in class FormulaCompiler

Returns:

Throws:

SBMLException

leq

public ASTNodeValue leq(ASTNode left,
                        ASTNode right)
                 throws SBMLException

Description copied from interface: ASTNodeCompiler

Less equal.

Specified by:

leq in interface ASTNodeCompiler

Overrides:

leq in class FormulaCompiler

Returns:

Throws:

SBMLException

lt

public ASTNodeValue lt(ASTNode left,
                       ASTNode right)
                throws SBMLException

Description copied from interface: ASTNodeCompiler

Less than.

Specified by:

lt in interface ASTNodeCompiler

Overrides:

lt in class FormulaCompiler

Returns:

Throws:

SBMLException

neq

public ASTNodeValue neq(ASTNode left,
                        ASTNode right)
                 throws SBMLException

Description copied from interface: ASTNodeCompiler

Not equal.

Specified by:

neq in interface ASTNodeCompiler

Overrides:

neq in class FormulaCompiler

Returns:

Throws:

SBMLException

not

public ASTNodeValue not(ASTNode node)
                 throws SBMLException

Specified by:

not in interface ASTNodeCompiler

Overrides:

not in class FormulaCompiler

Parameters:

node - This value must be interpretable as a Boolean.

Returns:

Throws:

SBMLException

or

public ASTNodeValue or(java.util.List<ASTNode> nodes)
                throws SBMLException

Specified by:

or in interface ASTNodeCompiler

Overrides:

or in class FormulaCompiler

Parameters:

nodes - These values must be interpretable as a Boolean.

Returns:

Throws:

SBMLException

xor

public ASTNodeValue xor(java.util.List<ASTNode> nodes)
                 throws SBMLException

Description copied from interface: ASTNodeCompiler

Exclusive or.

Specified by:

xor in interface ASTNodeCompiler

Overrides:

xor in class FormulaCompiler

Parameters:

nodes - It must be possible to evaluate the given values to Boolean.

Returns:

Throws:

SBMLException