org.sbml.jsbml.util.compilers

Class FormulaCompilerNoPiecewise

java.lang.Object

org.sbml.jsbml.util.StringTools

org.sbml.jsbml.util.compilers.FormulaCompiler

org.sbml.jsbml.util.compilers.FormulaCompilerNoPiecewise

All Implemented Interfaces:

ASTNodeCompiler

public class FormulaCompilerNoPiecewise
extends FormulaCompiler

Produces an infix formula like FormulaCompiler but removes all the piecewise functions. They are replaced by an id that is unique if you are using the same FormulaCompilerNoPiecewise instance. The content of the piecewise function is put in a Map and is transformed to use if/then/else. This class is used for example to create an SBML2XPP converter where (in XPP) the piecewise operator is not supported.

Since:

0.8

Version:

$Rev$

Author:

Nicolas Rodriguez

Field Summary

Fields

Modifier and Type	Field and Description
private java.lang.String	andReplacement
private java.lang.String	orReplacement
private java.util.Map<java.lang.String,java.lang.String>	piecewiseMap

Fields inherited from class org.sbml.jsbml.util.compilers.FormulaCompiler

EXPONENTIALE, FORMULA_ARGUMENT_SEPARATOR, INVERSE_TRIGONOMETRIC_PREFIX

Fields inherited from class org.sbml.jsbml.util.StringTools

DECIMAL_FORMAT, REAL_FORMAT, SCIENTIFIC_FORMAT, underscore

Constructor Summary

Constructors

Constructor and Description
FormulaCompilerNoPiecewise()

Method Summary

Modifier and Type	Method and Description
java.lang.String	getAndReplacement() Gets the String that will be used to replace ' and ' (the mathML <and> element) in the boolean expressions.
java.lang.String	getOrReplacement() Gets the String that will be used to replace ' or ' (the mathML <or> element) in the boolean expressions.
java.util.Map<java.lang.String,java.lang.String>	getPiecewiseMap() Gets a Map of the piecewise expressions that have been transformed.
ASTNodeValue	piecewise(java.util.List<ASTNode> nodes)
void	setAndReplacement(java.lang.String andReplacement) Sets the String that will be used to replace ' and ' (the mathML <and> element) in the boolean expressions.
void	setOrReplacement(java.lang.String orReplacement) Sets the String that will be used to replace ' or ' (the mathML <or> element) in the boolean expressions.

Methods inherited from class org.sbml.jsbml.util.compilers.FormulaCompiler

abs, and, arccos, arccosh, arccot, arccoth, arccsc, arccsch, arcsec, arcsech, arcsin, arcsinh, arctan, arctanh, brackets, ceiling, checkBrackets, checkDenominatorBrackets, checkRelationalArgumentBrackets, compile, compile, compile, compile, compile, compile, cos, cosh, cot, coth, csc, csch, delay, diff, eq, exp, factorial, floor, frac, frac, frac, function, function, function, geq, getConstantAvogadro, getConstantE, getConstantFalse, getConstantPi, getConstantTrue, getNegativeInfinity, getPositiveInfinity, getRateOf, getSpecies, getStoichiometry, gt, implies, lambda, lambdaBody, leq, ln, log, log, logicalOperation, logicalOperationFunction, lt, max, min, minus, neq, not, or, plus, pow, pow, quotient, relation, rem, root, root, root, sec, sech, selector, selector, sin, sinh, sqrt, sqrt, sum, symbolTime, tan, tanh, times, times, uMinus, unknownValue, vector, vector, xor

Methods inherited from class org.sbml.jsbml.util.StringTools

append, append, concat, concatStringBuilder, encodeForHTML, fill, fill, firstLetterLowerCase, firstLetterUpperCase, getWordForNumber, leadingZeros, newLine, parseSBMLBoolean, parseSBMLDouble, parseSBMLInt, parseSBMLShort, toHTML, toHTML, toString, toString, toXMLAnnotationString, toXMLMessageString, toXMLNotesString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

piecewiseMap

private java.util.Map<java.lang.String,java.lang.String> piecewiseMap

andReplacement

private java.lang.String andReplacement

orReplacement

private java.lang.String orReplacement

Constructor Detail

FormulaCompilerNoPiecewise

public FormulaCompilerNoPiecewise()

Method Detail

piecewise

public ASTNodeValue piecewise(java.util.List<ASTNode> nodes)
                       throws SBMLException

Specified by:

piecewise in interface ASTNodeCompiler

Overrides:

piecewise in class FormulaCompiler

Returns:

Throws:

SBMLException

getPiecewiseMap

public java.util.Map<java.lang.String,java.lang.String> getPiecewiseMap()

Gets a Map of the piecewise expressions that have been transformed.

Returns:

a Map of the piecewise expressions that have been transformed.

getAndReplacement

public java.lang.String getAndReplacement()

Gets the String that will be used to replace ' and ' (the mathML <and> element) in the boolean expressions.

Returns:

the String that will be used to replace ' and ' (the mathML <and> element) in the boolean expressions.

setAndReplacement

public void setAndReplacement(java.lang.String andReplacement)

Sets the String that will be used to replace ' and ' (the mathML <and> element) in the boolean expressions. The default value used is ' & '. If null is given, no replacement will be performed.

Parameters:

andReplacement -

getOrReplacement

public java.lang.String getOrReplacement()

Gets the String that will be used to replace ' or ' (the mathML <or> element) in the boolean expressions.

Returns:

the String that will be used to replace ' or ' (the mathML <or> element) in the boolean expressions.

setOrReplacement

public void setOrReplacement(java.lang.String orReplacement)

Sets the String that will be used to replace ' or ' (the mathML <or> element) in the boolean expressions. The default value is ' | '. If null is given, no replacement will be performed.

Parameters:

orReplacement -