org.sbml.jsbml.util.compilers

Class MathMLXMLStreamCompiler

java.lang.Object

org.sbml.jsbml.util.compilers.MathMLXMLStreamCompiler

public class MathMLXMLStreamCompiler
extends java.lang.Object

Writes an ASTNode the mathML.

Since:

0.8

Version:

$Rev$

Author:

Nicolas Rodriguez

Field Summary

Fields

Modifier and Type	Field and Description
private FindUnitsCompiler	findUnitsCompiler
private java.lang.String	indent
private static org.apache.log4j.Logger	logger A Logger for this class.
(package private) java.text.DecimalFormat	realFormat Formats the real number in a valid way for mathML.
private javax.xml.stream.XMLStreamWriter	writer

Constructor Summary

Constructors

Constructor and Description
MathMLXMLStreamCompiler()
MathMLXMLStreamCompiler(java.lang.String indent)
MathMLXMLStreamCompiler(javax.xml.stream.XMLStreamWriter writer, java.lang.String indent) Create a new MathMLXMLStreamCompiler.

Method Summary

Modifier and Type	Method and Description
void	compile(ASTNode astNode) Compiles this ASTNode and produce an XMLStreamWriter representing this node in mathML.
private void	compileBvar(ASTNode arg)
private void	compileCi(ASTNode astNode)
private void	compileConstantElement(ASTNode astNode)
private void	compileCSymbol(ASTNode astNode)
private void	compileElement(ASTNode astNode)
private void	compileElement(java.lang.String string, ASTNode astNode)
private void	compileExponentiale(ASTNode astNode)
private void	compileFunctionElement(ASTNode astNode)
private void	compileInteger(ASTNode astNode)
private void	compileLambda(ASTNode astNode)
private void	compileLog(ASTNode astNode)
private void	compileLogicalOperator(ASTNode astNode)
private void	compileNegativeInfinity(ASTNode astNode)
private void	compileNotANumber(ASTNode astNode)
private void	compilePi(ASTNode astNode)
private void	compilePiecewise(ASTNode astNode)
private void	compilePositiveInfinity(ASTNode astNode)
private void	compileRational(ASTNode astNode)
private void	compileReal_e(ASTNode astNode)
private void	compileReal(ASTNode astNode)
private void	compileRelationalOperator(ASTNode astNode)
private void	compileRootElement(ASTNode astNode)
void	compileSemanticAnnotations(ASTNode node)
private void	compileUserFunction(ASTNode astNode)
private void	compileVector(ASTNode astNode)
private void	function(java.lang.String functionName, ASTNode... args)
private void	function(java.lang.String functionName, java.util.List<ASTNode> args)
boolean	isSBMLNamespaceNeeded(ASTNode astNode)
static void	main(java.lang.String[] args)
static java.lang.String	toMathML(ASTNode astNode) Writes an ASTNode the mathML.
private void	writeEndElement()
private void	writePlugins(ASTNode astNode) Writes the attributes of the ASTNodePlugins present on the ASTNode.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

indent

private java.lang.String indent

writer

private final javax.xml.stream.XMLStreamWriter writer

logger

private static final transient org.apache.log4j.Logger logger

A Logger for this class.

findUnitsCompiler

private final FindUnitsCompiler findUnitsCompiler

realFormat

java.text.DecimalFormat realFormat

Formats the real number in a valid way for mathML. When java read 0.000166, it transforms it to 1.66E-4. This DecimalFormat will wrote the number as it was read.

Constructor Detail

MathMLXMLStreamCompiler

public MathMLXMLStreamCompiler(javax.xml.stream.XMLStreamWriter writer,
                               java.lang.String indent)

Create a new MathMLXMLStreamCompiler.

Parameters:

writer - the writer

indent - the starting indentation

Throws:

java.lang.IllegalArgumentException - if the writer is null

MathMLXMLStreamCompiler

public MathMLXMLStreamCompiler(java.lang.String indent)
                        throws javax.xml.stream.XMLStreamException

Parameters:

indent -

Throws:

javax.xml.stream.XMLStreamException

MathMLXMLStreamCompiler

public MathMLXMLStreamCompiler()
                        throws javax.xml.stream.XMLStreamException

Throws:

javax.xml.stream.XMLStreamException

Method Detail

toMathML

public static java.lang.String toMathML(ASTNode astNode)

Writes an ASTNode the mathML.

Parameters:

astNode - the ASTNode to serialize as mathML

Returns:

a String representing this ASTNode as mathML.

isSBMLNamespaceNeeded

public boolean isSBMLNamespaceNeeded(ASTNode astNode)

Parameters:

astNode -

Returns:

compile

public void compile(ASTNode astNode)

Compiles this ASTNode and produce an XMLStreamWriter representing this node in mathML.

Parameters:

astNode -

Throws:

SBMLException - if any problems occur while checking the ASTNode tree.

compileNegativeInfinity

private void compileNegativeInfinity(ASTNode astNode)

Parameters:

astNode -

compilePositiveInfinity

private void compilePositiveInfinity(ASTNode astNode)

Parameters:

astNode -

compileNotANumber

private void compileNotANumber(ASTNode astNode)

Parameters:

astNode -

compilePi

private void compilePi(ASTNode astNode)

Parameters:

astNode -

compileExponentiale

private void compileExponentiale(ASTNode astNode)

Parameters:

astNode -

compileCSymbol

private void compileCSymbol(ASTNode astNode)

Parameters:

astNode -

compileInteger

private void compileInteger(ASTNode astNode)

Parameters:

astNode -

compileReal

private void compileReal(ASTNode astNode)

Parameters:

astNode -

compileReal_e

private void compileReal_e(ASTNode astNode)

Parameters:

astNode -

compileRational

private void compileRational(ASTNode astNode)

Parameters:

astNode -

compileCi

private void compileCi(ASTNode astNode)

Parameters:

astNode -

writePlugins

private void writePlugins(ASTNode astNode)

Writes the attributes of the ASTNodePlugins present on the ASTNode.

Parameters:

astNode -

compileElement

private void compileElement(ASTNode astNode)

Parameters:

astNode -

compileFunctionElement

private void compileFunctionElement(ASTNode astNode)

Parameters:

astNode -

compileRootElement

private void compileRootElement(ASTNode astNode)

Parameters:

astNode -

compileLambda

private void compileLambda(ASTNode astNode)

Parameters:

astNode -

compileBvar

private void compileBvar(ASTNode arg)

Parameters:

arg -

compilePiecewise

private void compilePiecewise(ASTNode astNode)

Parameters:

astNode -

compileLog

private void compileLog(ASTNode astNode)

Parameters:

astNode -

compileConstantElement

private void compileConstantElement(ASTNode astNode)

Parameters:

astNode -

compileElement

private void compileElement(java.lang.String string,
                            ASTNode astNode)

Parameters:

string - element name

astNode - the node containing all the element information

compileRelationalOperator

private void compileRelationalOperator(ASTNode astNode)

Parameters:

astNode -

compileLogicalOperator

private void compileLogicalOperator(ASTNode astNode)

Parameters:

astNode -

compileVector

private void compileVector(ASTNode astNode)

Parameters:

astNode -

function

private void function(java.lang.String functionName,
                      java.util.List<ASTNode> args)

Parameters:

functionName -

args -

function

private void function(java.lang.String functionName,
                      ASTNode... args)

Parameters:

functionName -

args -

compileUserFunction

private void compileUserFunction(ASTNode astNode)

Parameters:

astNode -

writeEndElement

private void writeEndElement()

compileSemanticAnnotations

public void compileSemanticAnnotations(ASTNode node)

Parameters:

node -

main

public static void main(java.lang.String[] args)

Parameters:

args -