org.sbml.jsbml.validator.offline.constraints.helper

Class AssignmentCycleValidation

java.lang.Object

org.sbml.jsbml.validator.offline.constraints.helper.AssignmentCycleValidation

All Implemented Interfaces:

ValidationFunction<SBase>

public class AssignmentCycleValidation
extends java.lang.Object
implements ValidationFunction<SBase>

Since:

1.2

Author:

Roman

Field Summary

Fields

Modifier and Type	Field and Description
private static boolean	isDebugEnabled A static boolean to avoid many unnecessary calls to Category.isDebugEnabled().
private static org.apache.log4j.Logger	logger A Logger for this class.
private java.util.Queue<SBase>	toCheck
private java.util.Set<java.lang.String>	visited

Constructor Summary

Constructors

Constructor and Description
AssignmentCycleValidation()

Method Summary

Modifier and Type	Method and Description
boolean	check(ValidationContext ctx, SBase sb) Returns true if the constraint is valid and false if it's broken.
private void	checkChildren(Model m, ASTNode math)
private void	checkChildren(Model m, MathContainer r)
private void	checkChildren(Model m, Reaction r)
private void	checkChildren(Model m, SBase sb)
private java.lang.String	getRelatedId(SBase sb) Returns an id depending of the type of SBase given.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

visited

private java.util.Set<java.lang.String> visited

toCheck

private java.util.Queue<SBase> toCheck

logger

private static final transient org.apache.log4j.Logger logger

A Logger for this class.

isDebugEnabled

private static final transient boolean isDebugEnabled

A static boolean to avoid many unnecessary calls to Category.isDebugEnabled().

Constructor Detail

AssignmentCycleValidation

public AssignmentCycleValidation()

Method Detail

check

public boolean check(ValidationContext ctx,
                     SBase sb)

Description copied from interface: ValidationFunction

Returns true if the constraint is valid and false if it's broken.

Specified by:

check in interface ValidationFunction<SBase>

Returns:

false if the constraint is broken

getRelatedId

private java.lang.String getRelatedId(SBase sb)

Returns an id depending of the type of SBase given. If it is a Reaction, returns reaction.id, if it is an Assignment, returns assignment.variable (symbol or variable attribute), if it is a Species, returns species.compartment. For any other type of SBase, returns null.

Parameters:

sb - an SBase

Returns:

an id depending of the type of SBase given.

checkChildren

private void checkChildren(Model m,
                           SBase sb)

Parameters:

m -

sb -

checkChildren

private void checkChildren(Model m,
                           MathContainer r)

Parameters:

m -

r -

checkChildren

private void checkChildren(Model m,
                           Reaction r)

Parameters:

m -

r -

checkChildren

private void checkChildren(Model m,
                           ASTNode math)

Parameters:

m -

math -