All Differences

Removals

Additions

Changes

Bold is New, strike is deleted

A  B C D E F G H I K L M N O P Q R S T U V W X TOP
AbstractRenderPlugin
AbstractSBase
AbstractSBasePlugin
AbstractTreeNode
addCVTerm
addQualitativeSpecies (QualitativeSpecies)
addSpecies (QualitativeSpecies)
addTransition (Transition)
AdvectionCoefficient
AnalyticGeometry
AnalyticVolume
Annotation
annotationNameSpaces
ASTNode
ASTNodeCompiler

B  A C D E F G H I K L M N O P Q R S T U V W X TOP
BoundaryCondition
BoundingBox

C  A B D E F G H I K L M N O P Q R S T U V W X TOP
clone
  type  () in org.sbml.jsbml.ext.comp.ModelDefinition
  type  () in org.sbml.jsbml.ext.qual.QualitativeModel
  type  () in org.sbml.jsbml.ext.render.AbstractRenderPlugin
  type  () in org.sbml.jsbml.util.ValuePair
ColorDefinition
Compartment
CompModelPlugin
CompSBasePlugin
CompSBMLDocumentPlugin
containsQualitativeSpecies (QualitativeSpecies)
containsUndeclaredUnits
  type  () in org.sbml.jsbml.Compartment
  type  () in org.sbml.jsbml.Species
CoordinateComponent
createPosition
  type  () in org.sbml.jsbml.ext.layout.BoundingBox
  type  (double, double, double) in org.sbml.jsbml.ext.layout.BoundingBox
CSGPrimitive
CSGSetOperator
CubicBezier
CurveSegment
CVTerm

D  A B C E F G H I K L M N O P Q R S T U V W X TOP
DiffusionCoefficient
DomainType

E  A B C D F G H I K L M N O P Q R S T U V W X TOP
Ellipse
equals
  type  (Object) in org.sbml.jsbml.ext.fbc.FluxBound
  type  (Object) in org.sbml.jsbml.ext.fbc.FluxObjective
  type  (Object) in org.sbml.jsbml.ext.fbc.Objective
  type  (Object) in org.sbml.jsbml.ext.groups.Group
  type  (Object) in org.sbml.jsbml.ext.groups.Member
  type  (Object) in org.sbml.jsbml.ext.groups.MemberConstraint
  type  (Object) in org.sbml.jsbml.ext.render.ColorDefinition
  type  (Object) in org.sbml.jsbml.ext.render.Ellipse
  type  (Object) in org.sbml.jsbml.ext.render.GlobalRenderInformation
  type  (Object) in org.sbml.jsbml.ext.render.GradientBase
  type  (Object) in org.sbml.jsbml.ext.render.GradientStop
  type  (Object) in org.sbml.jsbml.ext.render.GraphicalPrimitive1D
  type  (Object) in org.sbml.jsbml.ext.render.GraphicalPrimitive2D
  type  (Object) in org.sbml.jsbml.ext.render.Image
  type  (Object) in org.sbml.jsbml.ext.render.LinearGradient
  type  (Object) in org.sbml.jsbml.ext.render.LocalRenderInformation
  type  (Object) in org.sbml.jsbml.ext.render.LocalStyle
  type  (Object) in org.sbml.jsbml.ext.render.RenderInformationBase
  type  (Object) in org.sbml.jsbml.ext.render.Style
  type  (Object) in org.sbml.jsbml.ext.render.Transformation
  type  (Object) in org.sbml.jsbml.ext.spatial.AdvectionCoefficient
  type  (Object) in org.sbml.jsbml.ext.spatial.DiffusionCoefficient
Event

F  A B C D E G H I K L M N O P Q R S T U V W X TOP
FBCModelPlugin
FindUnitsCompiler
fireNodeAddedEvent ()
fireNodeRemovedEvent ()
firePropertyChange
  type  (String, Object, Object) in org.sbml.jsbml.AbstractSBase
  type  (String, Object, Object) in org.sbml.jsbml.ext.AbstractSBasePlugin
FluxBound
FluxObjective
FormulaCompiler
FormulaParser
FormulaParserConstants
FormulaParserLL3
FormulaParserLL3Constants

G  A B C D E F H I K L M N O P Q R S T U V W X TOP
GeneralGlyph
Geometry
GeometryDefinition
getAllowsChildren
  type  () in org.sbml.jsbml.ext.qual.QualitativeModel
  type  () in org.sbml.jsbml.ext.render.ColorDefinition
  type  () in org.sbml.jsbml.ext.render.GraphicalPrimitive1D
  type  () in org.sbml.jsbml.ext.render.Transformation
getChildAt
  type  (int) in org.sbml.jsbml.ext.qual.QualitativeModel
  type  (int) in org.sbml.jsbml.ext.render.ColorDefinition
  type  (int) in org.sbml.jsbml.ext.render.GraphicalPrimitive1D
  type  (int) in org.sbml.jsbml.ext.render.Style
  type  (int) in org.sbml.jsbml.ext.render.Transformation
getChildCount
  type  () in org.sbml.jsbml.ext.qual.QualitativeModel
  type  () in org.sbml.jsbml.ext.render.ColorDefinition
  type  () in org.sbml.jsbml.ext.render.GraphicalPrimitive1D
  type  () in org.sbml.jsbml.ext.render.Transformation
getCoordinateSystem ()
getDataType ()
getElementName ()
getElementNamespace ()
getFunctionType ()
getGroup
  type  () in org.sbml.jsbml.ext.render.LineEnding
  type  () in org.sbml.jsbml.ext.render.Style
getListOfQualitativeSpecies ()
getListOfTransitions ()
getModel ()
getNumChildren ()
getOperationType ()
getPackageName ()
getParent ()
getParentSBMLObject ()
getPolygonType ()
getPrefix ()
getPrimitiveType ()
getReadingParsers ()
getSampledField ()
getStrokeWidth ()
getTerm ()
getTriple ()
getType ()
getUnits ()
getUnitsInstance ()
getURI ()
getWritingParsers ()
GlobalRenderInformation
GradientBase
GradientStop
GraphicalPrimitive1D
GraphicalPrimitive2D
GraphicalPrimitive2D.FillRule
Group
group
GroupsModelPlugin

H  A B C D E F G I K L M N O P Q R S T U V W X TOP
hashCode
  type  () in org.sbml.jsbml.ext.fbc.FluxBound
  type  () in org.sbml.jsbml.ext.fbc.FluxObjective
  type  () in org.sbml.jsbml.ext.fbc.Objective
  type  () in org.sbml.jsbml.ext.groups.Group
  type  () in org.sbml.jsbml.ext.groups.Member
  type  () in org.sbml.jsbml.ext.groups.MemberConstraint
  type  () in org.sbml.jsbml.ext.layout.LayoutModelPlugin
  type  () in org.sbml.jsbml.ext.render.ColorDefinition
  type  () in org.sbml.jsbml.ext.render.Ellipse
  type  () in org.sbml.jsbml.ext.render.GlobalRenderInformation
  type  () in org.sbml.jsbml.ext.render.GradientBase
  type  () in org.sbml.jsbml.ext.render.GradientStop
  type  () in org.sbml.jsbml.ext.render.GraphicalPrimitive1D
  type  () in org.sbml.jsbml.ext.render.GraphicalPrimitive2D
  type  () in org.sbml.jsbml.ext.render.Image
  type  () in org.sbml.jsbml.ext.render.LinearGradient
  type  () in org.sbml.jsbml.ext.render.LocalRenderInformation
  type  () in org.sbml.jsbml.ext.render.LocalStyle
  type  () in org.sbml.jsbml.ext.render.RenderInformationBase
  type  () in org.sbml.jsbml.ext.render.Style
  type  () in org.sbml.jsbml.ext.render.Transformation
  type  () in org.sbml.jsbml.ext.spatial.AdvectionCoefficient
  type  () in org.sbml.jsbml.ext.spatial.DiffusionCoefficient
  type  () in org.sbml.jsbml.ext.spatial.GeometryDefinition
  type  () in org.sbml.jsbml.ext.spatial.SampledFieldGeometry
history

I  A B C D E F G H K L M N O P Q R S T U V W X TOP
IFormulaParser
Image
isSetListOfQualitativeSpecies ()
isSetListOfTransitions ()

K  A B C D E F G H I L M N O P Q R S T U V W X TOP
KineticLaw

L  A B C D E F G H I K M N O P Q R S T U V W X TOP
LaTeXCompiler
Layout
LayoutConstants
LayoutModelPlugin
LinearGradient
LineEnding
LineSegment
ListOfMemberConstraint
ListOfObjectives
ListOfWithName
LocalParameter
LocalRenderInformation
LocalStyle

M  A B C D E F G H I K L N O P Q R S T U V W X TOP
MathMLCompiler
Member
MemberConstraint
Model
ModelDefinition

N  A B C D E F G H I K L M O P Q R S T U V W X TOP
nonRDFAnnotation

O  A B C D E F G H I K L M N P Q R S T U V W X TOP
Objective
org.sbml.jsbml
org.sbml.jsbml.ext
org.sbml.jsbml.ext.comp
org.sbml.jsbml.ext.fbc
org.sbml.jsbml.ext.groups
org.sbml.jsbml.ext.layout
org.sbml.jsbml.ext.qual
org.sbml.jsbml.ext.render
org.sbml.jsbml.ext.spatial
org.sbml.jsbml.test.sbml
org.sbml.jsbml.text.parser
org.sbml.jsbml.util
org.sbml.jsbml.util.compilers
org.sbml.jsbml.xml
org.sbml.jsbml.xml.parsers
org.sbml.jsbml.xml.test

P  A B C D E F G H I K L M N O Q R S T U V W X TOP
ParameterType
ParametricObject
parse ()
ParseException
parseFormula (String, IFormulaParser)
ParserManager
Point
Port
PropertyUndefinedError

Q  A B C D E F G H I K L M N O P R S T U V W X TOP
QualitativeModel
  org.sbml.jsbml.ext.qual
  QualitativeModel (Model) constructor

R  A B C D E F G H I K L M N O P Q S T U V W X TOP
ReactionGlyph
readAttribute
  type  (String, String, String) in org.sbml.jsbml.ext.qual.QualitativeModel
  type  (String, String, String) in org.sbml.jsbml.ext.spatial.AdvectionCoefficient
  type  (String, String, String) in org.sbml.jsbml.ext.spatial.DiffusionCoefficient
  type  (String, String, String) in org.sbml.jsbml.ext.spatial.GeometryDefinition
  type  (String, String, String) in org.sbml.jsbml.ext.spatial.SampledFieldGeometry
readingParsers
removeFromParent
  type  () in org.sbml.jsbml.CVTerm
  type  () in org.sbml.jsbml.ext.AbstractSBasePlugin
  type  () in org.sbml.jsbml.ext.comp.ReplacedBy
removeQualitativeSpecies (QualitativeSpecies)
removeResource (int)
removeTransition (Transition)
RenderInformationBase
RenderParser
ReplacedBy

S  A B C D E F G H I K L M N O P Q R T U V W X TOP
SampledField
SampledFieldGeometry
SBase
SBMLDocument
SBO
SBO.Term
SBO.Triple
setCoordinateSystem (GeometryKind)
setDataType (DataKind)
setFunctionType (FunctionKind)
setGroup
  type  (RenderGroup) in org.sbml.jsbml.ext.render.LineEnding
  type  (RenderGroup) in org.sbml.jsbml.ext.render.Style
setId (String)
setListOfQualitativeSpecies (ListOf<QualitativeSpecies>)
setListOfTransitions (ListOf<Transition>)
setOperationType (SetOperation)
setParent (TreeNode)
setSampledField (String)
setStrokeWidth (Double)
setType (BoundaryKind)
SpatialConstants
SpatialModelPlugin
SpatialSpeciesPlugin
Species
SpeciesReference
strokeWidth
Style

T  A B C D E F G H I K L M N O P Q R S U V W X TOP
TestCVTerms
TextGlyph
toString
  type  () in org.sbml.jsbml.SpeciesReference
  type  () in org.sbml.jsbml.ext.layout.LineSegment
  type  () in org.sbml.jsbml.ext.render.LocalStyle
Transformation
Transformation2D
TreeNodeChangeEvent
TreeNodeWithChangeSupport

U  A B C D E F G H I K L M N O P Q R S T V W X TOP
Unit
UnitDefinition
UnitsCompiler
unregister
  type  (SBase) in org.sbml.jsbml.KineticLaw
  type  (SBase) in org.sbml.jsbml.Model
unsetListOfQualitativeSpecies ()
unsetListOfTransitions ()
userObject

V  A B C D E F G H I K L M N O P Q R S T U W X TOP
ValuePair

W  A B C D E F G H I K L M N O P Q R S T U V X TOP
writeXMLAttributes
  type  () in org.sbml.jsbml.ext.qual.QualitativeModel
  type  () in org.sbml.jsbml.ext.spatial.AdvectionCoefficient
  type  () in org.sbml.jsbml.ext.spatial.DiffusionCoefficient
  type  () in org.sbml.jsbml.ext.spatial.GeometryDefinition
  type  () in org.sbml.jsbml.ext.spatial.SampledFieldGeometry

X  A B C D E F G H I K L M N O P Q R S T U V W TOP
XMLNode