org.sbml.jsbml.ext.fbc
public class FluxBound extends AbstractNamedSBase implements UniqueNamedSBase
Modifier and Type | Class and Description |
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static class |
FluxBound.Operation
Allowable operations for flux bounds.
|
Modifier and Type | Field and Description |
---|---|
private boolean |
isSetValue |
private FluxBound.Operation |
operation |
private java.lang.String |
reaction |
private static long |
serialVersionUID
Generated serial version identifier.
|
private java.lang.Double |
value |
ignoredExtensions, ignoredXMLElements
listOfListeners, parent, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS
Constructor and Description |
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FluxBound()
Creates an instance of FluxBound.
|
FluxBound(FluxBound fb) |
FluxBound(int level,
int version)
Creates a FluxBound instance with a level and version.
|
FluxBound(java.lang.String id)
Creates a FluxBound instance with an id.
|
FluxBound(java.lang.String id,
int level,
int version)
Creates a
FluxBound instance with an id, level, and version. |
FluxBound(java.lang.String id,
java.lang.String name,
int level,
int version)
Creates a FluxBound instance with an id, name, level, and version.
|
Modifier and Type | Method and Description |
---|---|
FluxBound |
clone()
Creates a deep copy of this object, i.e., a new
SBase with the same properties
like this one. |
FluxBound.Operation |
getOperation()
Returns the operation
|
java.lang.String |
getReaction()
Returns the reaction id
|
double |
getValue()
Returns the value
|
void |
initDefaults()
Initializes the default values using the namespace.
|
boolean |
isIdMandatory()
This method can be used to query if the identifier of this
NamedSBase is required to be defined (i.e., not null )
in the definition of SBML. |
boolean |
isSetOperation()
Returns whether operation is set
|
boolean |
isSetReaction()
Returns whether reaction is set
|
boolean |
isSetValue() |
boolean |
readAttribute(java.lang.String attributeName,
java.lang.String prefix,
java.lang.String value)
If the attribute is an id or name attribute, it will set the id or name
of this object with the value of the XML attribute ('value').
|
void |
setOperation(FluxBound.Operation operation) |
void |
setReaction(Reaction reaction) |
void |
setReaction(java.lang.String reaction)
Sets the the reaction id
|
void |
setValue(double value) |
boolean |
unsetOperation()
Unsets the variable operation
|
boolean |
unsetReaction()
Unsets the variable reaction
|
boolean |
unsetValue()
Unsets the variable value
|
java.util.Map<java.lang.String,java.lang.String> |
writeXMLAttributes() |
equals, getId, getName, hashCode, isSetId, isSetName, isValidId, setId, setName, toString, unsetId, unsetName
addCVTerm, addDeclaredNamespace, addExtension, appendNotes, appendNotes, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, getAllowsChildren, getAnnotation, getAnnotationString, getChildAt, getChildCount, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, setAnnotation, setHistory, setLevel, setMetaId, setNamespace, setNotes, setNotes, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregister, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, firePropertyChange, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet
finalize, getClass, notify, notifyAll, wait, wait, wait
getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName
addCVTerm, addDeclaredNamespace, addExtension, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, equals, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hashCode, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeTreeNodeChangeListener, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregister, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet
private static final long serialVersionUID
private boolean isSetValue
private FluxBound.Operation operation
private java.lang.String reaction
private java.lang.Double value
public FluxBound()
public FluxBound(FluxBound fb)
fb
- public FluxBound(int level, int version)
level
- version
- public FluxBound(java.lang.String id)
id
- public FluxBound(java.lang.String id, int level, int version)
FluxBound
instance with an id, level, and version.id
- level
- version
- public FluxBound(java.lang.String id, java.lang.String name, int level, int version)
id
- name
- level
- version
- public FluxBound clone()
SBase
SBase
with the same properties
like this one.clone
in interface SBase
clone
in class AbstractSBase
public FluxBound.Operation getOperation()
public java.lang.String getReaction()
public double getValue()
public void initDefaults()
public boolean isIdMandatory()
NamedSBase
NamedSBase
is required to be defined (i.e., not null
)
in the definition of SBML.isIdMandatory
in interface NamedSBase
true
if the identifier of this element must be set in
order to create a valid SBML representation. false
otherwise, i.e., if the identifier can be understood as an optional
attribute.public boolean isSetValue()
public boolean readAttribute(java.lang.String attributeName, java.lang.String prefix, java.lang.String value)
SBase
readAttribute
in interface SBase
readAttribute
in class AbstractNamedSBase
attributeName
- localName of the XML attributeprefix
- prefix of the XML attributevalue
- value of the XML attributetrue
if the attribute has been successfully read.public void setOperation(FluxBound.Operation operation)
operation
- the operation to setpublic void setReaction(Reaction reaction)
reaction
- public void setReaction(java.lang.String reaction)
reaction
- the reaction id to setpublic void setValue(double value)
value
- the value to setpublic java.util.Map<java.lang.String,java.lang.String> writeXMLAttributes()
writeXMLAttributes
in interface SBase
writeXMLAttributes
in class AbstractNamedSBase
Map
containing the XML attributes of this object.public boolean unsetValue()
true
, if value was set before,
otherwise false
public boolean isSetOperation()
public boolean unsetOperation()
true
, if operation was set before,
otherwise false
public boolean isSetReaction()
public boolean unsetReaction()
true
, if reaction was set before,
otherwise false