org.sbml.jsbml.ext.layout
public class GeneralGlyph extends AbstractReferenceGlyph
Modifier and Type | Field and Description |
---|---|
private Curve |
curve |
private ListOf<ReferenceGlyph> |
listOfReferenceGlyphs |
private ListOf<GraphicalObject> |
listOfSubGlyphs |
private static long |
serialVersionUID
Generated serial version identifier.
|
ignoredExtensions, ignoredXMLElements
listOfListeners, parent, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS
Constructor and Description |
---|
GeneralGlyph() |
GeneralGlyph(GeneralGlyph generalGlyph) |
GeneralGlyph(int level,
int version) |
GeneralGlyph(java.lang.String id) |
GeneralGlyph(java.lang.String id,
int level,
int version) |
Modifier and Type | Method and Description |
---|---|
boolean |
addSpeciesReferenceGlyph(ReferenceGlyph glyph)
Appends the specified element to the end of the
listOfReferenceGlyphs . |
boolean |
addSubGlyph(GraphicalObject subGlyph)
Adds a new
GraphicalObject to the listOfSubGlyphs. |
GeneralGlyph |
clone()
Creates a deep copy of this object, i.e., a new
SBase with the same properties
like this one. |
CompartmentGlyph |
createCompartmentGlyph()
Creates a new
CompartmentGlyph element and adds it to the ListOfSubGlyphs list |
CompartmentGlyph |
createCompartmentGlyph(java.lang.String id)
Creates a new
CompartmentGlyph element and adds it to the ListOfSubGlyphs list |
GraphicalObject |
createGraphicalObject()
Creates a new
GraphicalObject element and adds it to the ListOfSubGlyphs list |
GraphicalObject |
createGraphicalObject(java.lang.String id)
Creates a new
GraphicalObject element and adds it to the ListOfSubGlyphs list |
ReactionGlyph |
createReactionGlyph()
Creates a new
ReactionGlyph element and adds it to the ListOfSubGlyphs list |
ReactionGlyph |
createReactionGlyph(java.lang.String id)
Creates a new
ReactionGlyph element and adds it to the ListOfSubGlyphs list |
ReferenceGlyph |
createReferenceGlyph(java.lang.String id)
Creates and adds a new
ReferenceGlyph |
SpeciesGlyph |
createSpeciesGlyph()
Creates a new
SpeciesGlyph element and adds it to the ListOfSubGlyphs list |
SpeciesGlyph |
createSpeciesGlyph(java.lang.String id)
Creates a new
SpeciesGlyph element and adds it to the ListOfSubGlyphs list |
SpeciesReferenceGlyph |
createSpeciesReferenceGlyph()
Creates a new
SpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs list |
SpeciesReferenceGlyph |
createSpeciesReferenceGlyph(java.lang.String id)
Creates a new
SpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs list |
ReferenceGlyph |
createSpeciesReferenceGlyph(java.lang.String id,
java.lang.String speciesGlyph)
Creates and adds a new
ReferenceGlyph |
TextGlyph |
createTextGlyph()
Creates a new
TextGlyph element and adds it to the ListOfSubGlyphs list |
TextGlyph |
createTextGlyph(java.lang.String id)
Creates a new
TextGlyph element and adds it to the ListOfSubGlyphs list |
boolean |
equals(java.lang.Object object)
|
javax.swing.tree.TreeNode |
getChildAt(int index) |
int |
getChildCount() |
Curve |
getCurve() |
ListOf<ReferenceGlyph> |
getListOfReferenceGlyphs()
If the
listOfReferenceGlyphs has not yet been initialized, this
will be done by this method. |
ListOf<GraphicalObject> |
getListOfSubGlyphs()
Returns the listOfSubGlyphs.
|
int |
hashCode() |
boolean |
isSetCurve() |
boolean |
isSetListOfReferenceGlyphs() |
boolean |
isSetListOfSubGlyphs()
Returns
true , if listOfSubGlyphs contains at least one element. |
boolean |
readAttribute(java.lang.String attributeName,
java.lang.String prefix,
java.lang.String value)
If the attribute is an id or name attribute, it will set the id or name
of this object with the value of the XML attribute ('value').
|
boolean |
removeSubGlyph(GraphicalObject subGlyph)
Removes an element from the listOfSubGlyphs.
|
void |
removeSubGlyph(int i)
Removes an element from the listOfSubGlyphs at the given index.
|
void |
setCurve(Curve curve) |
void |
setListOfSpeciesReferencesGlyph(ListOf<ReferenceGlyph> listOfReferenceGlyph) |
void |
setListOfSubGlyphs(ListOf<GraphicalObject> listOfSubGlyphs)
Sets the given
ListOf<GraphicalObject> . |
private void |
unsetListOfSpeciesReferencesGlyph() |
boolean |
unsetListOfSubGlyphs()
Returns
true , if listOfSubGlyphs contain at least one element,
otherwise false |
void |
unsetReaction() |
java.util.Map<java.lang.String,java.lang.String> |
writeXMLAttributes() |
getNamedSBaseInstance, getReference, getReferenceInstance, isSetReference, setNamedSBase, setReference, setReference, toString, unsetReference
createBoundingBox, createBoundingBox, createBoundingBox, createBoundingBox, getAllowsChildren, getBoundingBox, getMetaidRef, isIdMandatory, isSetBoundingBox, isSetMetaidRef, setBoundingBox, setMetaidRef, unsetBoundingBox, unsetMetaidRef
getId, getName, isSetId, isSetName, isValidId, setId, setName, unsetId, unsetName
addCVTerm, addDeclaredNamespace, addExtension, appendNotes, appendNotes, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, setAnnotation, setHistory, setLevel, setMetaId, setNamespace, setNotes, setNotes, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregister, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, firePropertyChange, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet
finalize, getClass, notify, notifyAll, wait, wait, wait
getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName
addCVTerm, addDeclaredNamespace, addExtension, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeTreeNodeChangeListener, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregister, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet
private static final long serialVersionUID
private Curve curve
private ListOf<ReferenceGlyph> listOfReferenceGlyphs
private ListOf<GraphicalObject> listOfSubGlyphs
public GeneralGlyph()
public GeneralGlyph(int level, int version)
level
- version
- public GeneralGlyph(GeneralGlyph generalGlyph)
generalGlyph
- public GeneralGlyph(java.lang.String id)
id
- public GeneralGlyph(java.lang.String id, int level, int version)
id
- level
- version
- public boolean isSetListOfSubGlyphs()
true
, if listOfSubGlyphs contains at least one element.true
, if listOfSubGlyphs contains at least one element,
otherwise false
public ListOf<GraphicalObject> getListOfSubGlyphs()
public void setListOfSubGlyphs(ListOf<GraphicalObject> listOfSubGlyphs)
ListOf<GraphicalObject>
. If listOfSubGlyphs
was defined before and contains some elements, they are all unset.listOfSubGlyphs
- public boolean unsetListOfSubGlyphs()
true
, if listOfSubGlyphs contain at least one element,
otherwise false
true
, if listOfSubGlyphs contain at least one element,
otherwise false
public boolean addSubGlyph(GraphicalObject subGlyph)
GraphicalObject
to the listOfSubGlyphs.
The listOfSubGlyphs is initialized if necessary.
subGlyph
- the element to add to the listtrue
(as specified by Collection.add
)public boolean removeSubGlyph(GraphicalObject subGlyph)
subGlyph
- the element to be removed from the listtrue
if the list contained the specified elementList#remove(Object)
public void removeSubGlyph(int i)
i
- the index where to remove the SubGlyph
java.lang.IndexOutOfBoundsException
- if the listOf is not set or
if the index is out of bound (index < 0 || index > list.size)public SpeciesReferenceGlyph createSpeciesReferenceGlyph()
SpeciesReferenceGlyph
element and adds it to the ListOfSubGlyphs listpublic SpeciesReferenceGlyph createSpeciesReferenceGlyph(java.lang.String id)
SpeciesReferenceGlyph
element and adds it to the ListOfSubGlyphs listSpeciesReferenceGlyph
elementpublic TextGlyph createTextGlyph()
TextGlyph
element and adds it to the ListOfSubGlyphs listpublic TextGlyph createTextGlyph(java.lang.String id)
TextGlyph
element and adds it to the ListOfSubGlyphs listTextGlyph
elementpublic SpeciesGlyph createSpeciesGlyph()
SpeciesGlyph
element and adds it to the ListOfSubGlyphs listpublic SpeciesGlyph createSpeciesGlyph(java.lang.String id)
SpeciesGlyph
element and adds it to the ListOfSubGlyphs listSpeciesGlyph
elementpublic CompartmentGlyph createCompartmentGlyph()
CompartmentGlyph
element and adds it to the ListOfSubGlyphs listpublic CompartmentGlyph createCompartmentGlyph(java.lang.String id)
CompartmentGlyph
element and adds it to the ListOfSubGlyphs listCompartmentGlyph
elementpublic ReactionGlyph createReactionGlyph()
ReactionGlyph
element and adds it to the ListOfSubGlyphs listpublic ReactionGlyph createReactionGlyph(java.lang.String id)
ReactionGlyph
element and adds it to the ListOfSubGlyphs listReactionGlyph
elementpublic GraphicalObject createGraphicalObject()
GraphicalObject
element and adds it to the ListOfSubGlyphs listpublic GraphicalObject createGraphicalObject(java.lang.String id)
GraphicalObject
element and adds it to the ListOfSubGlyphs listGraphicalObject
elementpublic boolean addSpeciesReferenceGlyph(ReferenceGlyph glyph)
listOfReferenceGlyphs
.glyph
- true
(as specified by Collection#add(E)
)java.lang.NullPointerException
- if the specified element is null and this list does not
permit null elementsjava.lang.IllegalArgumentException
- if some property of this element prevents it from being added
to this listpublic GeneralGlyph clone()
SBase
SBase
with the same properties
like this one.clone
in interface SBase
clone
in class AbstractReferenceGlyph
public ReferenceGlyph createReferenceGlyph(java.lang.String id)
ReferenceGlyph
id
- the identifier for the ReferenceGlyph
to be created.ReferenceGlyph
.public ReferenceGlyph createSpeciesReferenceGlyph(java.lang.String id, java.lang.String speciesGlyph)
ReferenceGlyph
id
- the identifier for the ReferenceGlyph
to be created.glyph
- corresponding GraphicalObject
ID.ReferenceGlyph
that points to the given glyph
.public boolean equals(java.lang.Object object)
SBase
true
if and only if the given SBase
has exactly the same
properties like this SBase
instance.equals
in interface SBase
equals
in class AbstractReferenceGlyph
true
if and only if the given Object
is an instance of
SBase
that has exactly the same properties like this
SBase instance.public javax.swing.tree.TreeNode getChildAt(int index)
getChildAt
in interface javax.swing.tree.TreeNode
getChildAt
in class GraphicalObject
public int getChildCount()
getChildCount
in interface javax.swing.tree.TreeNode
getChildCount
in class GraphicalObject
public Curve getCurve()
public ListOf<ReferenceGlyph> getListOfReferenceGlyphs()
listOfReferenceGlyphs
has not yet been initialized, this
will be done by this method.listOfReferenceGlyphs
public int hashCode()
hashCode
in interface SBase
hashCode
in class AbstractReferenceGlyph
Object.hashCode()
public boolean isSetCurve()
public boolean isSetListOfReferenceGlyphs()
public boolean readAttribute(java.lang.String attributeName, java.lang.String prefix, java.lang.String value)
SBase
readAttribute
in interface SBase
readAttribute
in class GraphicalObject
attributeName
- localName of the XML attributeprefix
- prefix of the XML attributevalue
- value of the XML attributetrue
if the attribute has been successfully read.public void setCurve(Curve curve)
curve
- public void setListOfSpeciesReferencesGlyph(ListOf<ReferenceGlyph> listOfReferenceGlyph)
listOfReferenceGlyph
- private void unsetListOfSpeciesReferencesGlyph()
public void unsetReaction()
public java.util.Map<java.lang.String,java.lang.String> writeXMLAttributes()
writeXMLAttributes
in interface SBase
writeXMLAttributes
in class GraphicalObject
Map
containing the XML attributes of this object.