org.sbml.jsbml.ext.layout
public class GraphicalObject extends AbstractNamedSBase implements UniqueNamedSBase
Modifier and Type | Field and Description |
---|---|
private BoundingBox |
boundingBox |
private static org.apache.log4j.Logger |
logger
A
Logger for this class. |
private java.lang.String |
metaidRef |
private static long |
serialVersionUID
Generated serial version identifier.
|
ignoredExtensions, ignoredXMLElements
listOfListeners, parent, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS
Constructor and Description |
---|
GraphicalObject() |
GraphicalObject(GraphicalObject graphicalObject) |
GraphicalObject(int level,
int version) |
GraphicalObject(java.lang.String id) |
GraphicalObject(java.lang.String id,
int level,
int version) |
Modifier and Type | Method and Description |
---|---|
GraphicalObject |
clone()
Creates a deep copy of this object, i.e., a new
SBase with the same properties
like this one. |
BoundingBox |
createBoundingBox()
Creates and sets a
BoundingBox for this object. |
BoundingBox |
createBoundingBox(Dimensions dimensions) |
BoundingBox |
createBoundingBox(double width,
double height,
double depth)
Creates and sets a
BoundingBox for this object, with the
given parameters for Dimensions . |
BoundingBox |
createBoundingBox(double width,
double height,
double depth,
double x,
double y,
double z)
|
boolean |
equals(java.lang.Object object)
|
boolean |
getAllowsChildren() |
BoundingBox |
getBoundingBox() |
javax.swing.tree.TreeNode |
getChildAt(int index) |
int |
getChildCount() |
java.lang.String |
getMetaidRef()
Returns the value of metaidRef
|
int |
hashCode() |
boolean |
isIdMandatory()
This method can be used to query if the identifier of this
NamedSBase is required to be defined (i.e., not null )
in the definition of SBML. |
boolean |
isSetBoundingBox() |
boolean |
isSetMetaidRef()
Returns whether metaidRef is set
|
boolean |
readAttribute(java.lang.String attributeName,
java.lang.String prefix,
java.lang.String value)
If the attribute is an id or name attribute, it will set the id or name
of this object with the value of the XML attribute ('value').
|
void |
setBoundingBox(BoundingBox boundingBox) |
void |
setMetaidRef(java.lang.String metaidRef)
Sets the value of metaidRef
|
void |
unsetBoundingBox() |
boolean |
unsetMetaidRef()
Unsets the variable metaidRef
|
java.util.Map<java.lang.String,java.lang.String> |
writeXMLAttributes() |
getId, getName, isSetId, isSetName, isValidId, setId, setName, toString, unsetId, unsetName
addCVTerm, addDeclaredNamespace, addExtension, appendNotes, appendNotes, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, setAnnotation, setHistory, setLevel, setMetaId, setNamespace, setNotes, setNotes, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregister, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, firePropertyChange, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet
finalize, getClass, notify, notifyAll, wait, wait, wait
getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName
addCVTerm, addDeclaredNamespace, addExtension, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeTreeNodeChangeListener, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregister, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet
private static final long serialVersionUID
private static final org.apache.log4j.Logger logger
Logger
for this class.private BoundingBox boundingBox
private java.lang.String metaidRef
public GraphicalObject()
public GraphicalObject(GraphicalObject graphicalObject)
graphicalObject
- public GraphicalObject(int level, int version)
level
- version
- public GraphicalObject(java.lang.String id)
id
- public GraphicalObject(java.lang.String id, int level, int version)
id
- level
- version
- public GraphicalObject clone()
SBase
SBase
with the same properties
like this one.clone
in interface SBase
clone
in class AbstractSBase
public BoundingBox createBoundingBox()
BoundingBox
for this object.BoundingBox
.public BoundingBox createBoundingBox(Dimensions dimensions)
dimensions
- public BoundingBox createBoundingBox(double width, double height, double depth)
BoundingBox
for this object, with the
given parameters for Dimensions
.width
- height
- depth
- BoundingBox
.public BoundingBox createBoundingBox(double width, double height, double depth, double x, double y, double z)
width
- height
- depth
- x
- y
- z
- BoundingBox
.public boolean equals(java.lang.Object object)
SBase
true
if and only if the given SBase
has exactly the same
properties like this SBase
instance.equals
in interface SBase
equals
in class AbstractNamedSBase
true
if and only if the given Object
is an instance of
SBase
that has exactly the same properties like this
SBase instance.public boolean getAllowsChildren()
getAllowsChildren
in interface javax.swing.tree.TreeNode
getAllowsChildren
in class AbstractSBase
public BoundingBox getBoundingBox()
public javax.swing.tree.TreeNode getChildAt(int index)
getChildAt
in interface javax.swing.tree.TreeNode
getChildAt
in class AbstractSBase
public int getChildCount()
getChildCount
in interface javax.swing.tree.TreeNode
getChildCount
in class AbstractSBase
public int hashCode()
hashCode
in interface SBase
hashCode
in class AbstractNamedSBase
Object.hashCode()
public boolean isIdMandatory()
NamedSBase
NamedSBase
is required to be defined (i.e., not null
)
in the definition of SBML.isIdMandatory
in interface NamedSBase
true
if the identifier of this element must be set in
order to create a valid SBML representation. false
otherwise, i.e., if the identifier can be understood as an optional
attribute.public boolean isSetBoundingBox()
public void setBoundingBox(BoundingBox boundingBox)
boundingBox
- public void unsetBoundingBox()
public java.util.Map<java.lang.String,java.lang.String> writeXMLAttributes()
writeXMLAttributes
in interface SBase
writeXMLAttributes
in class AbstractNamedSBase
Map
containing the XML attributes of this object.public java.lang.String getMetaidRef()
public boolean isSetMetaidRef()
public void setMetaidRef(java.lang.String metaidRef)
public boolean unsetMetaidRef()
true
, if metaidRef was set before,
otherwise false
public boolean readAttribute(java.lang.String attributeName, java.lang.String prefix, java.lang.String value)
SBase
readAttribute
in interface SBase
readAttribute
in class AbstractNamedSBase
attributeName
- localName of the XML attributeprefix
- prefix of the XML attributevalue
- value of the XML attributetrue
if the attribute has been successfully read.