org.sbml.jsbml.ext.layout
public class ReactionGlyph extends AbstractReferenceGlyph
Modifier and Type | Field and Description |
---|---|
private Curve |
curve |
private ListOf<SpeciesReferenceGlyph> |
listOfSpeciesReferencesGlyph |
private static long |
serialVersionUID
Generated serial version identifier.
|
ignoredExtensions, ignoredXMLElements
listOfListeners, parent, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS
Constructor and Description |
---|
ReactionGlyph() |
ReactionGlyph(int level,
int version) |
ReactionGlyph(ReactionGlyph reactionGlyph) |
ReactionGlyph(java.lang.String id) |
ReactionGlyph(java.lang.String id,
int level,
int version) |
Modifier and Type | Method and Description |
---|---|
boolean |
addSpeciesReferenceGlyph(SpeciesReferenceGlyph glyph)
Appends the specified element to the end of the
listOfSpeciesReferencesGlyph . |
ReactionGlyph |
clone()
Creates a deep copy of this object, i.e., a new
SBase with the same properties
like this one. |
SpeciesReferenceGlyph |
createSpeciesReferenceGlyph(java.lang.String id)
Creates and adds a new
SpeciesReferenceGlyph |
SpeciesReferenceGlyph |
createSpeciesReferenceGlyph(java.lang.String id,
java.lang.String speciesGlyph)
Creates and adds a new
SpeciesReferenceGlyph |
boolean |
equals(java.lang.Object object)
|
javax.swing.tree.TreeNode |
getChildAt(int index) |
int |
getChildCount() |
Curve |
getCurve() |
ListOf<SpeciesReferenceGlyph> |
getListOfSpeciesReferenceGlyphs()
If the
listOfSpeciesReferencesGlyph has not yet been initialized, this
will be done by this method. |
java.lang.String |
getReaction() |
NamedSBase |
getReactionInstance()
Note that the return type of this method is
NamedSBase because it
could be possible to link some element from other packages to this glyph. |
SpeciesReferenceGlyph |
getSpeciesReferenceGlyph(int i) |
int |
hashCode() |
boolean |
isSetCurve() |
boolean |
isSetListOfSpeciesReferencesGlyphs() |
boolean |
isSetReaction() |
boolean |
readAttribute(java.lang.String attributeName,
java.lang.String prefix,
java.lang.String value)
If the attribute is an id or name attribute, it will set the id or name
of this object with the value of the XML attribute ('value').
|
void |
setCurve(Curve curve) |
void |
setListOfSpeciesReferencesGlyph(ListOf<SpeciesReferenceGlyph> listOfSpeciesReferencesGlyph) |
void |
setReaction(Reaction reaction) |
void |
setReaction(java.lang.String reaction) |
private void |
unsetListOfSpeciesReferencesGlyph() |
void |
unsetReaction() |
java.util.Map<java.lang.String,java.lang.String> |
writeXMLAttributes() |
getNamedSBaseInstance, getReference, getReferenceInstance, isSetReference, setNamedSBase, setReference, setReference, toString, unsetReference
createBoundingBox, createBoundingBox, createBoundingBox, createBoundingBox, getAllowsChildren, getBoundingBox, getMetaidRef, isIdMandatory, isSetBoundingBox, isSetMetaidRef, setBoundingBox, setMetaidRef, unsetBoundingBox, unsetMetaidRef
getId, getName, isSetId, isSetName, isValidId, setId, setName, unsetId, unsetName
addCVTerm, addDeclaredNamespace, addExtension, appendNotes, appendNotes, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, setAnnotation, setHistory, setLevel, setMetaId, setNamespace, setNotes, setNotes, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregister, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, firePropertyChange, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet
finalize, getClass, notify, notifyAll, wait, wait, wait
getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName
addCVTerm, addDeclaredNamespace, addExtension, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeTreeNodeChangeListener, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregister, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet
private static final long serialVersionUID
private Curve curve
private ListOf<SpeciesReferenceGlyph> listOfSpeciesReferencesGlyph
public ReactionGlyph()
public ReactionGlyph(int level, int version)
level
- version
- public ReactionGlyph(ReactionGlyph reactionGlyph)
reactionGlyph
- public ReactionGlyph(java.lang.String id)
id
- public ReactionGlyph(java.lang.String id, int level, int version)
id
- level
- version
- public boolean addSpeciesReferenceGlyph(SpeciesReferenceGlyph glyph)
listOfSpeciesReferencesGlyph
.glyph
- true
(as specified by Collection#add(E)
)java.lang.NullPointerException
- if the specified element is null and this list does not
permit null elementsjava.lang.IllegalArgumentException
- if some property of this element prevents it from being added
to this listpublic ReactionGlyph clone()
SBase
SBase
with the same properties
like this one.clone
in interface SBase
clone
in class AbstractReferenceGlyph
public SpeciesReferenceGlyph createSpeciesReferenceGlyph(java.lang.String id)
SpeciesReferenceGlyph
id
- the identifier for the SpeciesReferenceGlyph
to be created.SpeciesReferenceGlyph
.public SpeciesReferenceGlyph createSpeciesReferenceGlyph(java.lang.String id, java.lang.String speciesGlyph)
SpeciesReferenceGlyph
id
- the identifier for the SpeciesReferenceGlyph
to be created.speciesGlyph
- corresponding SpeciesGlyph
ID.SpeciesReferenceGlyph
that points to the given
speciesGlyph
.public boolean equals(java.lang.Object object)
SBase
true
if and only if the given SBase
has exactly the same
properties like this SBase
instance.equals
in interface SBase
equals
in class AbstractReferenceGlyph
true
if and only if the given Object
is an instance of
SBase
that has exactly the same properties like this
SBase instance.public javax.swing.tree.TreeNode getChildAt(int index)
getChildAt
in interface javax.swing.tree.TreeNode
getChildAt
in class GraphicalObject
public int getChildCount()
getChildCount
in interface javax.swing.tree.TreeNode
getChildCount
in class GraphicalObject
public Curve getCurve()
public ListOf<SpeciesReferenceGlyph> getListOfSpeciesReferenceGlyphs()
listOfSpeciesReferencesGlyph
has not yet been initialized, this
will be done by this method.listOfSpeciesReferencesGlyph
public java.lang.String getReaction()
public NamedSBase getReactionInstance()
NamedSBase
because it
could be possible to link some element from other packages to this glyph.public SpeciesReferenceGlyph getSpeciesReferenceGlyph(int i)
i
- public int hashCode()
hashCode
in interface SBase
hashCode
in class AbstractReferenceGlyph
Object.hashCode()
public boolean isSetCurve()
public boolean isSetListOfSpeciesReferencesGlyphs()
public boolean isSetReaction()
public boolean readAttribute(java.lang.String attributeName, java.lang.String prefix, java.lang.String value)
SBase
readAttribute
in interface SBase
readAttribute
in class GraphicalObject
attributeName
- localName of the XML attributeprefix
- prefix of the XML attributevalue
- value of the XML attributetrue
if the attribute has been successfully read.public void setCurve(Curve curve)
curve
- public void setListOfSpeciesReferencesGlyph(ListOf<SpeciesReferenceGlyph> listOfSpeciesReferencesGlyph)
listOfSpeciesReferencesGlyph
- public void setReaction(Reaction reaction)
reaction
- public void setReaction(java.lang.String reaction)
reaction
- private void unsetListOfSpeciesReferencesGlyph()
public void unsetReaction()
public java.util.Map<java.lang.String,java.lang.String> writeXMLAttributes()
writeXMLAttributes
in interface SBase
writeXMLAttributes
in class GraphicalObject
Map
containing the XML attributes of this object.