libSBML C++ API  5.18.0
addLayout.cpp

Simple example of using the SBML graphical layout specification, in both Level 2 and Level 3.

/**
* @file addLayout.cpp
* @brief This example adds a layout to the loaded model.
* @author Sarah Keating
*
* <!--------------------------------------------------------------------------
* This sample program is distributed under a different license than the rest
* of libSBML. This program uses the open-source MIT license, as follows:
*
* Copyright (c) 2013-2018 by the California Institute of Technology
* (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
* and the University of Heidelberg (Germany), with support from the National
* Institutes of Health (USA) under grant R01GM070923. All rights reserved.
*
* Permission is hereby granted, free of charge, to any person obtaining a
* copy of this software and associated documentation files (the "Software"),
* to deal in the Software without restriction, including without limitation
* the rights to use, copy, modify, merge, publish, distribute, sublicense,
* and/or sell copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
* THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
* DEALINGS IN THE SOFTWARE.
*
* Neither the name of the California Institute of Technology (Caltech), nor
* of the European Bioinformatics Institute (EMBL-EBI), nor of the University
* of Heidelberg, nor the names of any contributors, may be used to endorse
* or promote products derived from this software without specific prior
* written permission.
* ------------------------------------------------------------------------ -->
*/
#include <iostream>
#include <string>
#include "sbml/SBMLTypes.h"
#if (!defined LIBSBML_HAS_PACKAGE_LAYOUT)
#error "This example requires libSBML to be built with the layout extension."
#endif
using namespace std;
int main(int argc, char** argv){
if (argc != 2)
{
cout << endl << "Usage: addLayout input-filename"
<< endl << endl;
return 2;
}
SBMLDocument *d = readSBML(argv[1]);
if ( d->getNumErrors() > 0)
{
}
else
{
// enable the layout package
// note layout in L2 uses a different namespace than L3
if (d->getLevel() == 2)
{
}
else if (d->getLevel() == 3)
{
}
// get the model plugin
Model * model = d->getModel();
= static_cast<LayoutModelPlugin*>(model->getPlugin("layout"));
// create the Layout
LayoutPkgNamespaces layoutns(d->getLevel(), d->getVersion());
Layout* layout = mplugin->createLayout();
layout->setId("Layout_1");
Dimensions dim(&layoutns, 400.0, 220.0);
layout->setDimensions(&dim);
// write out the model
writeSBML(d, "added-layout.xml");
}
}