addCVTerm(CVTerm *term, bool newBag=false) | SBase | |
appendAnnotation(const XMLNode *annotation) | SBase | virtual |
appendAnnotation(const std::string &annotation) | SBase | virtual |
appendNotes(const XMLNode *notes) | SBase | |
appendNotes(const std::string ¬es) | SBase | |
clone() const | Compartment | virtual |
Compartment(unsigned int level, unsigned int version) | Compartment | |
Compartment(SBMLNamespaces *sbmlns) | Compartment | |
Compartment(const Compartment &orig) | Compartment | |
deleteDisabledPlugins(bool recursive=true) | SBase | |
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix) | SBase | |
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag) | SBase | |
getAllElements(ElementFilter *filter=NULL) | SBase | virtual |
getAllElementsFromPlugins(ElementFilter *filter=NULL) | SBase | virtual |
getAncestorOfType(int type, const std::string &pkgName="core") | SBase | |
getAncestorOfType(int type, const std::string pkgName="core") const | SBase | |
getAnnotation() | SBase | |
getAnnotation() const | SBase | |
getAnnotationString() | SBase | |
getAnnotationString() const | SBase | |
getColumn() const | SBase | |
getCompartmentType() const | Compartment | |
getConstant() const | Compartment | |
getCVTerm(unsigned int n) | SBase | |
getCVTerms() | SBase | |
getCVTerms() const | SBase | |
getDerivedUnitDefinition() | Compartment | |
getDerivedUnitDefinition() const | Compartment | |
getDisabledPlugin(unsigned int n) | SBase | |
getDisabledPlugin(unsigned int n) const | SBase | |
getElementByMetaId(const std::string &metaid) | SBase | virtual |
getElementByMetaId(const std::string &metaid) const | SBase | |
getElementBySId(const std::string &id) | SBase | virtual |
getElementBySId(const std::string &id) const | SBase | |
getElementName() const | Compartment | virtual |
getId() const | Compartment | virtual |
getIdAttribute() const | SBase | |
getLevel() const | SBase | |
getLine() const | SBase | |
getMetaId() const | SBase | |
getMetaId() | SBase | |
getModel() const | SBase | |
getModelHistory() const | SBase | |
getModelHistory() | SBase | |
getName() const | Compartment | virtual |
getNamespaces() const | SBase | virtual |
getNotes() | SBase | |
getNotes() const | SBase | |
getNotesString() | SBase | |
getNotesString() const | SBase | |
getNumCVTerms() | SBase | |
getNumDisabledPlugins() const | SBase | |
getNumPlugins() const | SBase | |
getOutside() const | Compartment | |
getPackageCoreVersion() const | SBase | |
getPackageName() const | SBase | |
getPackageVersion() const | SBase | |
getParentSBMLObject() | SBase | |
getParentSBMLObject() const | SBase | |
getPlugin(const std::string &package) | SBase | |
getPlugin(const std::string &package) const | SBase | |
getPlugin(unsigned int n) | SBase | |
getPlugin(unsigned int n) const | SBase | |
getPrefix() const | SBase | |
getResourceBiologicalQualifier(std::string resource) | SBase | |
getResourceModelQualifier(std::string resource) | SBase | |
getSBMLDocument() const | SBase | |
getSBMLDocument() | SBase | |
getSBOTerm() const | SBase | |
getSBOTermAsURL() const | SBase | |
getSBOTermID() const | SBase | |
getSize() const | Compartment | |
getSpatialDimensions() const | Compartment | |
getSpatialDimensionsAsDouble() const | Compartment | |
getTypeCode() const | Compartment | virtual |
getUnits() const | Compartment | |
getURI() const | SBase | |
getUserData() const | SBase | |
getVersion() const | SBase | |
getVolume() const | Compartment | |
hasRequiredAttributes() const | Compartment | virtual |
hasValidLevelVersionNamespaceCombination() | SBase | |
initDefaults() | Compartment | |
isPackageEnabled(const std::string &pkgName) const | SBase | |
isPackageURIEnabled(const std::string &pkgURI) const | SBase | |
isPkgEnabled(const std::string &pkgName) const | SBase | |
isPkgURIEnabled(const std::string &pkgURI) const | SBase | |
isSetAnnotation() const | SBase | |
isSetCompartmentType() const | Compartment | |
isSetConstant() const | Compartment | |
isSetId() const | Compartment | virtual |
isSetIdAttribute() const | SBase | |
isSetMetaId() const | SBase | |
isSetModelHistory() | SBase | |
isSetName() const | Compartment | virtual |
isSetNotes() const | SBase | |
isSetOutside() const | Compartment | |
isSetSBOTerm() const | SBase | |
isSetSize() const | Compartment | |
isSetSpatialDimensions() const | Compartment | |
isSetUnits() const | Compartment | |
isSetUserData() const | SBase | |
isSetVolume() const | Compartment | |
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) | SBase | |
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const | SBase | |
matchesSBMLNamespaces(const SBase *sb) | SBase | |
matchesSBMLNamespaces(const SBase *sb) const | SBase | |
operator=(const Compartment &rhs) | Compartment | |
SBase::operator=(const SBase &rhs) | SBase | |
read(XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED) | SBase | |
removeFromParentAndDelete() | SBase | virtual |
removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true) | SBase | |
renameMetaIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
renameSIdRefs(const std::string &oldid, const std::string &newid) | Compartment | virtual |
renameUnitSIdRefs(const std::string &oldid, const std::string &newid) | Compartment | virtual |
replaceTopLevelAnnotationElement(const XMLNode *annotation) | SBase | |
replaceTopLevelAnnotationElement(const std::string &annotation) | SBase | |
setAnnotation(const XMLNode *annotation) | SBase | virtual |
setAnnotation(const std::string &annotation) | SBase | virtual |
setCompartmentType(const std::string &sid) | Compartment | |
setConstant(bool value) | Compartment | |
setElementText(const std::string &text) | SBase | protectedvirtual |
setId(const std::string &sid) | Compartment | virtual |
setIdAttribute(const std::string &sid) | SBase | virtual |
setMetaId(const std::string &metaid) | SBase | |
setModelHistory(ModelHistory *history) | SBase | |
setName(const std::string &name) | Compartment | virtual |
setNamespaces(XMLNamespaces *xmlns) | SBase | |
setNotes(const XMLNode *notes) | SBase | |
setNotes(const std::string ¬es, bool addXHTMLMarkup=false) | SBase | |
setOutside(const std::string &sid) | Compartment | |
setSBOTerm(int value) | SBase | virtual |
setSBOTerm(const std::string &sboid) | SBase | virtual |
setSize(double value) | Compartment | |
setSpatialDimensions(unsigned int value) | Compartment | |
setSpatialDimensions(double value) | Compartment | |
setUnits(const std::string &sid) | Compartment | |
setUserData(void *userData) | SBase | |
setVolume(double value) | Compartment | |
toSBML() | SBase | |
toXMLNode() | SBase | |
unsetAnnotation() | SBase | |
unsetCompartmentType() | Compartment | |
unsetConstant() | Compartment | |
unsetCVTerms() | SBase | |
unsetId() | SBase | virtual |
unsetIdAttribute() | SBase | |
unsetMetaId() | SBase | |
unsetModelHistory() | SBase | |
unsetName() | Compartment | virtual |
unsetNotes() | SBase | |
unsetOutside() | Compartment | |
unsetSBOTerm() | SBase | |
unsetSize() | Compartment | |
unsetSpatialDimensions() | Compartment | |
unsetUnits() | Compartment | |
unsetUserData() | SBase | |
unsetVolume() | Compartment | |
~Compartment() | Compartment | virtual |
~SBase() | SBase | virtual |