addCVTerm(CVTerm *term, bool newBag=false) | SBase | |
appendAnnotation(const XMLNode *annotation) | SBase | virtual |
appendAnnotation(const std::string &annotation) | SBase | virtual |
appendNotes(const XMLNode *notes) | SBase | |
appendNotes(const std::string ¬es) | SBase | |
basePoint1_X() const | RenderCubicBezier | |
basePoint1_X() | RenderCubicBezier | |
basePoint1_Y() const | RenderCubicBezier | |
basePoint1_Y() | RenderCubicBezier | |
basePoint1_Z() const | RenderCubicBezier | |
basePoint1_Z() | RenderCubicBezier | |
basePoint2_X() const | RenderCubicBezier | |
basePoint2_X() | RenderCubicBezier | |
basePoint2_Y() const | RenderCubicBezier | |
basePoint2_Y() | RenderCubicBezier | |
basePoint2_Z() const | RenderCubicBezier | |
basePoint2_Z() | RenderCubicBezier | |
clone() const | RenderCubicBezier | virtual |
deleteDisabledPlugins(bool recursive=true) | SBase | |
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix) | SBase | |
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag) | SBase | |
getAllElements(ElementFilter *filter=NULL) | SBase | virtual |
getAllElementsFromPlugins(ElementFilter *filter=NULL) | SBase | virtual |
getAncestorOfType(int type, const std::string &pkgName="core") | SBase | |
getAncestorOfType(int type, const std::string pkgName="core") const | SBase | |
getAnnotation() | SBase | |
getAnnotation() const | SBase | |
getAnnotationString() | SBase | |
getAnnotationString() const | SBase | |
getBasePoint1_x() const | RenderCubicBezier | |
getBasePoint1_x() | RenderCubicBezier | |
getBasePoint1_y() const | RenderCubicBezier | |
getBasePoint1_y() | RenderCubicBezier | |
getBasePoint1_z() const | RenderCubicBezier | |
getBasePoint1_z() | RenderCubicBezier | |
getBasePoint2_x() const | RenderCubicBezier | |
getBasePoint2_x() | RenderCubicBezier | |
getBasePoint2_y() const | RenderCubicBezier | |
getBasePoint2_y() | RenderCubicBezier | |
getBasePoint2_z() const | RenderCubicBezier | |
getBasePoint2_z() | RenderCubicBezier | |
getColumn() const | SBase | |
getCVTerm(unsigned int n) | SBase | |
getCVTerms() | SBase | |
getCVTerms() const | SBase | |
getDisabledPlugin(unsigned int n) | SBase | |
getDisabledPlugin(unsigned int n) const | SBase | |
getElementByMetaId(const std::string &metaid) | SBase | virtual |
getElementByMetaId(const std::string &metaid) const | SBase | |
getElementBySId(const std::string &id) | SBase | virtual |
getElementBySId(const std::string &id) const | SBase | |
getElementName() const | RenderCubicBezier | virtual |
getId() const | SBase | virtual |
getIdAttribute() const | SBase | |
getLevel() const | SBase | |
getLine() const | SBase | |
getMetaId() const | SBase | |
getMetaId() | SBase | |
getModel() const | SBase | |
getModelHistory() const | SBase | |
getModelHistory() | SBase | |
getName() const | SBase | virtual |
getNamespaces() const | SBase | virtual |
getNotes() | SBase | |
getNotes() const | SBase | |
getNotesString() | SBase | |
getNotesString() const | SBase | |
getNumCVTerms() | SBase | |
getNumDisabledPlugins() const | SBase | |
getNumPlugins() const | SBase | |
getPackageCoreVersion() const | SBase | |
getPackageName() const | SBase | |
getPackageVersion() const | SBase | |
getParentSBMLObject() | SBase | |
getParentSBMLObject() const | SBase | |
getPlugin(const std::string &package) | SBase | |
getPlugin(const std::string &package) const | SBase | |
getPlugin(unsigned int n) | SBase | |
getPlugin(unsigned int n) const | SBase | |
getPrefix() const | SBase | |
getResourceBiologicalQualifier(std::string resource) | SBase | |
getResourceModelQualifier(std::string resource) | SBase | |
getSBMLDocument() const | SBase | |
getSBMLDocument() | SBase | |
getSBOTerm() const | SBase | |
getSBOTermAsURL() const | SBase | |
getSBOTermID() const | SBase | |
getTypeCode() const | RenderCubicBezier | virtual |
getURI() const | SBase | |
getUserData() const | SBase | |
getVersion() const | SBase | |
getX() const | RenderPoint | |
getX() | RenderPoint | |
getY() const | RenderPoint | |
getY() | RenderPoint | |
getZ() const | RenderPoint | |
getZ() | RenderPoint | |
hasRequiredAttributes() const | RenderCubicBezier | virtual |
hasValidLevelVersionNamespaceCombination() | SBase | |
initDefaults() | RenderPoint | |
isPackageEnabled(const std::string &pkgName) const | SBase | |
isPackageURIEnabled(const std::string &pkgURI) const | SBase | |
isPkgEnabled(const std::string &pkgName) const | SBase | |
isPkgURIEnabled(const std::string &pkgURI) const | SBase | |
isRenderCubicBezier() const | RenderPoint | virtual |
isRenderPoint() const | RenderPoint | virtual |
isSetAnnotation() const | SBase | |
isSetBasePoint1_x() const | RenderCubicBezier | |
isSetBasePoint1_y() const | RenderCubicBezier | |
isSetBasePoint1_z() const | RenderCubicBezier | |
isSetBasePoint2_x() const | RenderCubicBezier | |
isSetBasePoint2_y() const | RenderCubicBezier | |
isSetBasePoint2_z() const | RenderCubicBezier | |
isSetId() const | SBase | virtual |
isSetIdAttribute() const | SBase | |
isSetMetaId() const | SBase | |
isSetModelHistory() | SBase | |
isSetName() const | SBase | virtual |
isSetNotes() const | SBase | |
isSetSBOTerm() const | SBase | |
isSetUserData() const | SBase | |
isSetX() const | RenderPoint | |
isSetY() const | RenderPoint | |
isSetZ() const | RenderPoint | |
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) | SBase | |
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const | SBase | |
matchesSBMLNamespaces(const SBase *sb) | SBase | |
matchesSBMLNamespaces(const SBase *sb) const | SBase | |
operator=(const RenderCubicBezier &rhs) | RenderCubicBezier | |
RenderPoint::operator=(const RenderPoint &rhs) | RenderPoint | |
SBase::operator=(const SBase &rhs) | SBase | |
operator==(const RenderCubicBezier &left) const | RenderCubicBezier | |
RenderPoint::operator==(const RenderPoint &left) const | RenderPoint | |
read(XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED) | SBase | |
removeFromParentAndDelete() | SBase | virtual |
removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true) | SBase | |
renameMetaIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
renameSIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
renameUnitSIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
RenderCubicBezier(unsigned int level=RenderExtension::getDefaultLevel(), unsigned int version=RenderExtension::getDefaultVersion(), unsigned int pkgVersion=RenderExtension::getDefaultPackageVersion()) | RenderCubicBezier | |
RenderCubicBezier(RenderPkgNamespaces *renderns) | RenderCubicBezier | |
RenderCubicBezier(RenderPkgNamespaces *renderns, const RelAbsVector &bp1_x, const RelAbsVector &bp1_y, const RelAbsVector &bp1_z, const RelAbsVector &bp2_x, const RelAbsVector &bp2_y, const RelAbsVector &bp2_z, const RelAbsVector &end_x, const RelAbsVector &end_y, const RelAbsVector &end_z) | RenderCubicBezier | |
RenderCubicBezier(const XMLNode &node, unsigned int l2version=4) | RenderCubicBezier | |
RenderCubicBezier(const RenderCubicBezier &orig) | RenderCubicBezier | |
RenderPoint(unsigned int level=RenderExtension::getDefaultLevel(), unsigned int version=RenderExtension::getDefaultVersion(), unsigned int pkgVersion=RenderExtension::getDefaultPackageVersion()) | RenderPoint | |
RenderPoint(RenderPkgNamespaces *renderns) | RenderPoint | |
RenderPoint(RenderPkgNamespaces *renderns, const RelAbsVector &x, const RelAbsVector &y, const RelAbsVector &z=RelAbsVector(0.0, 0.0)) | RenderPoint | |
RenderPoint(const XMLNode &node, unsigned int l2version=4) | RenderPoint | |
RenderPoint(const RenderPoint &orig) | RenderPoint | |
replaceTopLevelAnnotationElement(const XMLNode *annotation) | SBase | |
replaceTopLevelAnnotationElement(const std::string &annotation) | SBase | |
setAnnotation(const XMLNode *annotation) | SBase | virtual |
setAnnotation(const std::string &annotation) | SBase | virtual |
setBasePoint1(const RelAbsVector &x, const RelAbsVector &y, const RelAbsVector &z=RelAbsVector(0.0, 0.0)) | RenderCubicBezier | |
setBasePoint1_x(const RelAbsVector &basePoint1_x) | RenderCubicBezier | |
setBasePoint1_X(const RelAbsVector &x) | RenderCubicBezier | |
setBasePoint1_Y(const RelAbsVector &y) | RenderCubicBezier | |
setBasePoint1_y(const RelAbsVector &basePoint1_y) | RenderCubicBezier | |
setBasePoint1_z(const RelAbsVector &basePoint1_z) | RenderCubicBezier | |
setBasePoint1_Z(const RelAbsVector &z) | RenderCubicBezier | |
setBasePoint2(const RelAbsVector &x, const RelAbsVector &y, const RelAbsVector &z=RelAbsVector(0.0, 0.0)) | RenderCubicBezier | |
setBasePoint2_x(const RelAbsVector &basePoint2_x) | RenderCubicBezier | |
setBasePoint2_X(const RelAbsVector &x) | RenderCubicBezier | |
setBasePoint2_y(const RelAbsVector &basePoint2_y) | RenderCubicBezier | |
setBasePoint2_Y(const RelAbsVector &y) | RenderCubicBezier | |
setBasePoint2_Z(const RelAbsVector &z) | RenderCubicBezier | |
setBasePoint2_z(const RelAbsVector &basePoint2_z) | RenderCubicBezier | |
setCoordinates(const RelAbsVector &x, const RelAbsVector &y, const RelAbsVector &z=RelAbsVector(0.0, 0.0)) | RenderPoint | |
setElementText(const std::string &text) | SBase | protectedvirtual |
setId(const std::string &sid) | SBase | virtual |
setIdAttribute(const std::string &sid) | SBase | virtual |
setMetaId(const std::string &metaid) | SBase | |
setModelHistory(ModelHistory *history) | SBase | |
setName(const std::string &name) | SBase | virtual |
setNamespaces(XMLNamespaces *xmlns) | SBase | |
setNotes(const XMLNode *notes) | SBase | |
setNotes(const std::string ¬es, bool addXHTMLMarkup=false) | SBase | |
setOffsets(const RelAbsVector &x, const RelAbsVector &y, const RelAbsVector &z=RelAbsVector(0.0, 0.0)) | RenderPoint | |
setSBOTerm(int value) | SBase | virtual |
setSBOTerm(const std::string &sboid) | SBase | virtual |
setUserData(void *userData) | SBase | |
setX(const RelAbsVector &x) | RenderPoint | |
setY(const RelAbsVector &y) | RenderPoint | |
setZ(const RelAbsVector &z) | RenderPoint | |
toSBML() | SBase | |
toXML(const std::string &name) const | RenderCubicBezier | virtual |
toXMLNode() | SBase | |
unsetAnnotation() | SBase | |
unsetBasePoint1_x() | RenderCubicBezier | |
unsetBasePoint1_y() | RenderCubicBezier | |
unsetBasePoint1_z() | RenderCubicBezier | |
unsetBasePoint2_x() | RenderCubicBezier | |
unsetBasePoint2_y() | RenderCubicBezier | |
unsetBasePoint2_z() | RenderCubicBezier | |
unsetCVTerms() | SBase | |
unsetId() | SBase | virtual |
unsetIdAttribute() | SBase | |
unsetMetaId() | SBase | |
unsetModelHistory() | SBase | |
unsetName() | SBase | virtual |
unsetNotes() | SBase | |
unsetSBOTerm() | SBase | |
unsetUserData() | SBase | |
unsetX() | RenderPoint | |
unsetY() | RenderPoint | |
unsetZ() | RenderPoint | |
writeXMLNS(XMLOutputStream &stream) const | RenderCubicBezier | protectedvirtual |
x() const | RenderPoint | |
x() | RenderPoint | |
y() const | RenderPoint | |
y() | RenderPoint | |
z() const | RenderPoint | |
z() | RenderPoint | |
~RenderCubicBezier() | RenderCubicBezier | virtual |
~RenderPoint() | RenderPoint | virtual |
~SBase() | SBase | virtual |