| addCVTerm(CVTerm *term, bool newBag=false) | SBase | |
| appendAnnotation(const XMLNode *annotation) | SBase | virtual |
| appendAnnotation(const std::string &annotation) | SBase | virtual |
| appendNotes(const XMLNode *notes) | SBase | |
| appendNotes(const std::string ¬es) | SBase | |
| checkConsistency() | SBMLDocument | |
| checkConsistencyWithStrictUnits() | SBMLDocument | |
| checkInternalConsistency() | SBMLDocument | |
| checkL1Compatibility(bool inConversion=false) | SBMLDocument | |
| checkL2v1Compatibility(bool inConversion=false) | SBMLDocument | |
| checkL2v2Compatibility(bool inConversion=false) | SBMLDocument | |
| checkL2v3Compatibility(bool inConversion=false) | SBMLDocument | |
| checkL2v4Compatibility() | SBMLDocument | |
| checkL2v5Compatibility() | SBMLDocument | |
| checkL3v1Compatibility() | SBMLDocument | |
| checkL3v2Compatibility() | SBMLDocument | |
| clone() const | SBMLDocument | virtual |
| convert(const ConversionProperties &props) | SBMLDocument | virtual |
| createModel(const std::string sid="") | SBMLDocument | |
| deleteDisabledPlugins(bool recursive=true) | SBase | |
| disablePackage(const std::string &pkgURI, const std::string &pkgPrefix) | SBase | |
| enableDefaultNS(const std::string &package, bool flag) | SBMLDocument | |
| enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag) | SBase | |
| expandFunctionDefinitions() | SBMLDocument | |
| expandInitialAssignments() | SBMLDocument | |
| getAllElements(ElementFilter *filter=NULL) | SBMLDocument | virtual |
| getAllElementsFromPlugins(ElementFilter *filter=NULL) | SBase | virtual |
| getAncestorOfType(int type, const std::string &pkgName="core") | SBase | |
| getAncestorOfType(int type, const std::string pkgName="core") const | SBase | |
| getAnnotation() | SBase | |
| getAnnotation() const | SBase | |
| getAnnotationString() | SBase | |
| getAnnotationString() const | SBase | |
| getColumn() const | SBase | |
| getCVTerm(unsigned int n) | SBase | |
| getCVTerms() | SBase | |
| getCVTerms() const | SBase | |
| getDefaultLevel() | SBMLDocument | static |
| getDefaultVersion() | SBMLDocument | static |
| getDisabledPlugin(unsigned int n) | SBase | |
| getDisabledPlugin(unsigned int n) const | SBase | |
| getElementByMetaId(const std::string &metaid) | SBMLDocument | virtual |
| SBase::getElementByMetaId(const std::string &metaid) const | SBase | |
| getElementBySId(const std::string &id) | SBMLDocument | virtual |
| SBase::getElementBySId(const std::string &id) const | SBase | |
| getElementName() const | SBMLDocument | virtual |
| getError(unsigned int n) const | SBMLDocument | |
| getErrorLog() | SBMLDocument | |
| getErrorLog() const | SBMLDocument | |
| getErrorWithSeverity(unsigned int n, unsigned int severity) const | SBMLDocument | |
| getId() const | SBase | virtual |
| getIdAttribute() const | SBase | |
| getLevel() const | SBase | |
| getLine() const | SBase | |
| getLocationURI() const | SBMLDocument | |
| getLocationURI() | SBMLDocument | |
| getMetaId() const | SBase | |
| getMetaId() | SBase | |
| getModel() const | SBMLDocument | |
| getModel() | SBMLDocument | |
| getModelHistory() const | SBase | |
| getModelHistory() | SBase | |
| getName() const | SBase | virtual |
| getNamespaces() const | SBMLDocument | virtual |
| getNotes() | SBase | |
| getNotes() const | SBase | |
| getNotesString() | SBase | |
| getNotesString() const | SBase | |
| getNumCVTerms() | SBase | |
| getNumDisabledPlugins() const | SBase | |
| getNumErrors() const | SBMLDocument | |
| getNumErrors(unsigned int severity) const | SBMLDocument | |
| getNumPlugins() const | SBase | |
| getPackageCoreVersion() const | SBase | |
| getPackageName() const | SBase | |
| getPackageRequired(const std::string &package) | SBMLDocument | |
| getPackageVersion() const | SBase | |
| getParentSBMLObject() | SBase | |
| getParentSBMLObject() const | SBase | |
| getPkgRequired(const std::string &package) | SBMLDocument | |
| getPlugin(const std::string &package) | SBase | |
| getPlugin(const std::string &package) const | SBase | |
| getPlugin(unsigned int n) | SBase | |
| getPlugin(unsigned int n) const | SBase | |
| getPrefix() const | SBase | |
| getResourceBiologicalQualifier(std::string resource) | SBase | |
| getResourceModelQualifier(std::string resource) | SBase | |
| getSBMLDocument() const | SBase | |
| getSBMLDocument() | SBase | |
| getSBOTerm() const | SBase | |
| getSBOTermAsURL() const | SBase | |
| getSBOTermID() const | SBase | |
| getTypeCode() const | SBMLDocument | virtual |
| getURI() const | SBase | |
| getUserData() const | SBase | |
| getVersion() const | SBase | |
| hasValidLevelVersionNamespaceCombination() | SBase | |
| isDisabledIgnoredPackage(const std::string &pkgURI) | SBMLDocument | |
| isEnabledDefaultNS(const std::string &package) | SBMLDocument | |
| isIgnoredPackage(const std::string &pkgURI) | SBMLDocument | |
| isIgnoredPkg(const std::string &pkgURI) | SBMLDocument | |
| isPackageEnabled(const std::string &pkgName) const | SBase | |
| isPackageURIEnabled(const std::string &pkgURI) const | SBase | |
| isPkgEnabled(const std::string &pkgName) const | SBase | |
| isPkgURIEnabled(const std::string &pkgURI) const | SBase | |
| isSetAnnotation() const | SBase | |
| isSetId() const | SBase | virtual |
| isSetIdAttribute() const | SBase | |
| isSetMetaId() const | SBase | |
| isSetModel() const | SBMLDocument | |
| isSetModelHistory() | SBase | |
| isSetName() const | SBase | virtual |
| isSetNotes() const | SBase | |
| isSetPackageRequired(const std::string &package) | SBMLDocument | |
| isSetPkgRequired(const std::string &package) | SBMLDocument | |
| isSetSBOTerm() const | SBase | |
| isSetUserData() const | SBase | |
| matchesRequiredSBMLNamespacesForAddition(const SBase *sb) | SBase | |
| matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const | SBase | |
| matchesSBMLNamespaces(const SBase *sb) | SBase | |
| matchesSBMLNamespaces(const SBase *sb) const | SBase | |
| operator=(const SBMLDocument &rhs) | SBMLDocument | |
| SBase::operator=(const SBase &rhs) | SBase | |
| printErrors(std::ostream &stream=std::cerr) const | SBMLDocument | |
| printErrors(std::ostream &stream, unsigned int severity) const | SBMLDocument | |
| read(XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED) | SBase | |
| removeFromParentAndDelete() | SBase | virtual |
| removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true) | SBase | |
| renameMetaIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
| renameSIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
| renameUnitSIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
| replaceTopLevelAnnotationElement(const XMLNode *annotation) | SBase | |
| replaceTopLevelAnnotationElement(const std::string &annotation) | SBase | |
| SBMLDocument(unsigned int level=0, unsigned int version=0) | SBMLDocument | |
| SBMLDocument(SBMLNamespaces *sbmlns) | SBMLDocument | |
| SBMLDocument(const SBMLDocument &orig) | SBMLDocument | |
| setAnnotation(const XMLNode *annotation) | SBase | virtual |
| setAnnotation(const std::string &annotation) | SBase | virtual |
| setConsistencyChecks(SBMLErrorCategory_t category, bool apply) | SBMLDocument | |
| setConsistencyChecksForConversion(SBMLErrorCategory_t category, bool apply) | SBMLDocument | |
| setElementText(const std::string &text) | SBase | protectedvirtual |
| setId(const std::string &sid) | SBase | virtual |
| setIdAttribute(const std::string &sid) | SBase | virtual |
| setLevelAndVersion(unsigned int level, unsigned int version, bool strict=true, bool ignorePackages=false) | SBMLDocument | |
| setLocationURI(const std::string &uri) | SBMLDocument | |
| setMetaId(const std::string &metaid) | SBase | |
| setModel(const Model *m) | SBMLDocument | |
| setModelHistory(ModelHistory *history) | SBase | |
| setName(const std::string &name) | SBase | virtual |
| setNamespaces(XMLNamespaces *xmlns) | SBase | |
| setNotes(const XMLNode *notes) | SBase | |
| setNotes(const std::string ¬es, bool addXHTMLMarkup=false) | SBase | |
| setPackageRequired(const std::string &package, bool flag) | SBMLDocument | |
| setPkgRequired(const std::string &package, bool flag) | SBMLDocument | |
| setSBOTerm(int value) | SBase | virtual |
| setSBOTerm(const std::string &sboid) | SBase | virtual |
| setUserData(void *userData) | SBase | |
| toSBML() | SBase | |
| toXMLNode() | SBase | |
| unsetAnnotation() | SBase | |
| unsetCVTerms() | SBase | |
| unsetId() | SBase | virtual |
| unsetIdAttribute() | SBase | |
| unsetMetaId() | SBase | |
| unsetModelHistory() | SBase | |
| unsetName() | SBase | virtual |
| unsetNotes() | SBase | |
| unsetSBOTerm() | SBase | |
| unsetUserData() | SBase | |
| validateSBML() | SBMLDocument | |
| ~SBase() | SBase | virtual |
| ~SBMLDocument() | SBMLDocument | virtual |
